pycom05g26090

ALA-interacting subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0005969
Physical Location & Seq
Reverse (-)
27341001 .. 27344728
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 987 bp
ATGGAAGTGGATGGAAGTGCCTCAACAGTTTCTAGGGGTGCTCAATCAATTCCACGGCAAACCAGGCGACAGAAAGCTTTTTATCAATTTCAACAGCAGAGTCTACCGGCTTGTAAACCCGTCCTCACACCAGCATGGGTGATTACCACATTTTTATTGATCGGGGCCATTTTCATACCCGCGGGGCTTATTACTCTTAACGTTGTGGAAATTGTGGACCAATATGATGCGGATTGTGTACCAGAGGCATTCAAGAGTAACAAGGTGGCATATATCAAAGATAACTTAATTCCTAAAAACTGTTCTCGGTACTTGAAGGTTTACAAGGACATGAAAGCTCCAATTTATATCTACTACCAGCTTGATAACTACTATCAAAACCACCGACGGTATGTCAAAAGTAGAAGTGATCAGCAGCTTTTACATGGATTGGGGCACAATGACACAAGCTCCTGTCAACCTGAGGAGTCCAACAAGGATCTTCCCATTGTTCCTTGTGGCTTGATAGCATGGAGTTTGTTTAATGATACATATACTTTTATTCGCGGAAGATCAGAATTAAAAGTCAACAGGAAAGACATAGCTTGGAAGAGCGACCGTGATCACAAATTTGGGAAGCATGTATATCCCTTTAATTTCCAGAACGGGACCTTGATTGGTGGTGCAAAGCTAGATCCAAAAATTCCTCTAAGCGATCAAGAAGACCTTATTGTATGGATGCGGACAGCTGCGCTTCCCAGTTTCCGGAAGCTGTATGGTAGAATTGAAGAGGATTTGGATGCAGATGATGTTCTAGTAGTGAATCTAACGAACAACTACAATACTTACAGTTTTGGTGGAAAAAAGAAGCTTATCCTTTCAACATCAAGTTGGTTAGGAGGAAAGAACGACTTCCTTGGACTTGCCTACACTTTTGTTGGTTCAACTTCCATCTTCATTTCTGTTGTCTTCTTGTTGCTGCATGTGAAATATCCAAGAACTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC50

Protein Analysis

329

Amino Acids

37.35

Weight (kDa)

9.14

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 66 - 326 9.1e-84 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 103
AccII CGCG 2 cut(s) 182, 546
AccIII TCCGGA 1 cut(s) 744
AciI CCGC 5 cut(s) 180, 182, 230, 546, 721
AclI AACGTT 1 cut(s) 201
AclWI GGATC 2 cut(s) 486, 668
AcsI RAATTY 2 cut(s) 608, 681
AfaI GTAC 2 cut(s) 240, 311
AfiI CCNNNNNNNGG 1 cut(s) 744
AgsI TTSAA 6 cut(s) 92, 253, 316, 767, 861, 924
AhdI GACNNNNNGTC 1 cut(s) 392
AjnI CCWGG 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 43
AlwI GGATC 2 cut(s) 486, 668
Aor13HI TCCGGA 1 cut(s) 744
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 3 cut(s) 415, 728, 958
ApoI RAATTY 2 cut(s) 608, 681
Asp700I GAANNNNTTC 1 cut(s) 890
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 3 cut(s) 165, 217, 648
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 2 cut(s) 217, 648
AxyI CCTNAGG 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 438
BbsI GAAGAC 2 cut(s) 708, 940
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 3 cut(s) 427, 715, 945
BccI CCATC 2 cut(s) 5, 938
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 64
BclI TGATCA 2 cut(s) 409, 601
BfaI CTAG 3 cut(s) 33, 671, 794
BisI GCNGC 3 cut(s) 416, 729, 959
BlsI GCNGC 3 cut(s) 417, 730, 960
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 2 cut(s) 217, 648
BmeRI GACNNNNNGTC 1 cut(s) 392
BmgT120I GGNCC 3 cut(s) 165, 217, 648
BmiI GGNNCC 2 cut(s) 166, 649
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 3 cut(s) 217, 708, 769
BmuI ACTGGG 1 cut(s) 732
BpiI GAAGAC 2 cut(s) 708, 940
BsaJI CCNNGG 3 cut(s) 53, 180, 895
BsaWI WCCGGW 1 cut(s) 744
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 744
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 738
Bse21I CCTNAGG 1 cut(s) 462
BseAI TCCGGA 1 cut(s) 744
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 3 cut(s) 53, 180, 895
BseGI GGATG 3 cut(s) 16, 723, 784
BseLI CCNNNNNNNGG 1 cut(s) 744
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 738
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 3 cut(s) 427, 715, 945
Bsh1236I CGCG 2 cut(s) 182, 546
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 107, 745
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 1 cut(s) 744
BsmFI GGGAC 1 cut(s) 661
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 43, 438
Bsp13I TCCGGA 1 cut(s) 744
Bsp143I GATC 7 cut(s) 159, 409, 478, 551, 601, 673, 694
BspACI CCGC 5 cut(s) 180, 182, 230, 546, 721
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 454
BspEI TCCGGA 1 cut(s) 744
BspFNI CGCG 2 cut(s) 182, 546
BspLI GGNNCC 2 cut(s) 166, 649
BspPI GGATC 2 cut(s) 486, 668
BspQI GCTCTTC 1 cut(s) 584
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 738
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 53, 180, 895
BssMI GATC 7 cut(s) 159, 409, 478, 551, 601, 673, 694
BssT1I CCWWGG 1 cut(s) 895
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 5 cut(s) 28, 302, 390, 599, 830
Bst6I CTCTTC 2 cut(s) 584, 762
BstDEI CTNAG 2 cut(s) 462, 689
BstDSI CCRYGG 2 cut(s) 53, 180
BstF5I GGATG 3 cut(s) 16, 723, 784
BstFNI CGCG 2 cut(s) 182, 546
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 7 cut(s) 162, 412, 481, 554, 604, 676, 697
BstMBI GATC 7 cut(s) 159, 409, 478, 551, 601, 673, 694
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 2 cut(s) 623, 965
BstSCI CCNGG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 438
BstUI CGCG 2 cut(s) 182, 546
BstV1I GCAGC 3 cut(s) 427, 715, 945
BstV2I GAAGAC 2 cut(s) 708, 940
BstX2I RGATCY 2 cut(s) 478, 673
BstYI RGATCY 2 cut(s) 478, 673
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 1 cut(s) 167
BtgI CCRYGG 2 cut(s) 53, 180
BtsCI GGATG 3 cut(s) 16, 723, 784
CfoI GCGC 1 cut(s) 733
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 3 cut(s) 165, 217, 648
Cfr42I CCGCGG 1 cut(s) 183
Csp6I GTAC 2 cut(s) 239, 310
CviAII CATG 6 cut(s) 135, 331, 425, 510, 620, 962
CviQI GTAC 2 cut(s) 239, 310
DdeI CTNAG 2 cut(s) 462, 689
DpnI GATC 7 cut(s) 161, 411, 480, 553, 603, 675, 696
DpnII GATC 7 cut(s) 159, 409, 478, 551, 601, 673, 694
DriI GACNNNNNGTC 1 cut(s) 392
Eam1104I CTCTTC 2 cut(s) 584, 762
Eam1105I GACNNNNNGTC 1 cut(s) 392
EarI CTCTTC 2 cut(s) 584, 762
Eco130I CCWWGG 1 cut(s) 895
Eco47I GGWCC 2 cut(s) 217, 648
Eco81I CCTNAGG 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 648
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 895
ErhI CCWWGG 1 cut(s) 895
FaeI CATG 6 cut(s) 138, 334, 428, 513, 623, 965
FalI AAGNNNNNCTT 4 cut(s) 690, 722, 875, 907
FaqI GGGAC 1 cut(s) 661
FatI CATG 6 cut(s) 134, 330, 424, 509, 619, 961
FauI CCCGC 2 cut(s) 175, 187
FbaI TGATCA 2 cut(s) 409, 601
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 416, 729, 959
FokI GGATG 3 cut(s) 23, 730, 791
Fsp4HI GCNGC 3 cut(s) 416, 729, 959
FspBI CTAG 3 cut(s) 33, 671, 794
GlaI GCGC 1 cut(s) 732
GluI GCNGC 3 cut(s) 416, 729, 959
HaeIII GGCC 1 cut(s) 167
HapII CCGG 2 cut(s) 107, 745
HhaI GCGC 1 cut(s) 733
Hin1II CATG 6 cut(s) 138, 334, 428, 513, 623, 965
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 2 cut(s) 458, 568
HindII GTYRAC 2 cut(s) 458, 568
HindIII AAGCTT 2 cut(s) 75, 848
HinfI GANTC 3 cut(s) 100, 467, 802
HpaII CCGG 2 cut(s) 107, 745
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 7 cut(s) 104, 116, 217, 239, 322, 458, 568
Hpy188I TCNGA 1 cut(s) 556
Hpy188III TCNNGA 4 cut(s) 253, 640, 698, 745
Hpy8I GTNNAC 7 cut(s) 104, 116, 217, 239, 322, 458, 568
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 5 cut(s) 28, 302, 390, 599, 830
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 665, 782, 961
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 462, 689
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 6 cut(s) 138, 334, 428, 513, 623, 965
HspAI GCGC 1 cut(s) 731
Kpn2I TCCGGA 1 cut(s) 744
Ksp22I TGATCA 2 cut(s) 409, 601
KspI CCGCGG 1 cut(s) 183
Kzo9I GATC 7 cut(s) 159, 409, 478, 551, 601, 673, 694
LguI GCTCTTC 1 cut(s) 584
LmnI GCTCC 2 cut(s) 343, 455
Lsp1109I GCAGC 3 cut(s) 427, 715, 945
LweI GCATC 3 cut(s) 217, 708, 769
MaeI CTAG 3 cut(s) 33, 671, 794
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 257
MalI GATC 7 cut(s) 161, 411, 480, 553, 603, 675, 696
MboI GATC 7 cut(s) 159, 409, 478, 551, 601, 673, 694
MboII GAAGA 7 cut(s) 473, 561, 601, 713, 779, 925, 940
MflI RGATCY 2 cut(s) 478, 673
MhlI GDGCHC 2 cut(s) 43, 438
MlyI GAGTC 2 cut(s) 109, 476
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 7 cut(s) 31, 134, 238, 457, 696, 763, 872
MroI TCCGGA 1 cut(s) 744
MroXI GAANNNNTTC 1 cut(s) 890
MseI TTAA 6 cut(s) 198, 287, 522, 560, 633, 985
MslI CAYNNNNRTG 1 cut(s) 133
MspA1I CMGCKG 2 cut(s) 182, 728
MspI CCGG 2 cut(s) 107, 745
MspR9I CCNGG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 2 cut(s) 182, 546
MwoI GCNNNNNNNGC 1 cut(s) 64
NdeII GATC 7 cut(s) 159, 409, 478, 551, 601, 673, 694
NlaIII CATG 6 cut(s) 138, 334, 428, 513, 623, 965
NlaIV GGNNCC 2 cut(s) 166, 649
NspI RCATGY 2 cut(s) 623, 965
PciSI GCTCTTC 1 cut(s) 584
PctI GAATGC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 890
PfeI GAWTC 1 cut(s) 802
PkrI GCNGC 3 cut(s) 417, 730, 960
PleI GAGTC 2 cut(s) 108, 475
PpsI GAGTC 2 cut(s) 108, 475
PpuMI RGGWCCY 1 cut(s) 648
Psp1406I AACGTT 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 648
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 166, 649
PspPI GGNCC 3 cut(s) 165, 217, 648
PspPPI RGGWCCY 1 cut(s) 648
PsuI RGATCY 2 cut(s) 478, 673
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 2 cut(s) 240, 311
RsaNI GTAC 2 cut(s) 239, 310
RseI CAYNNNNRTG 1 cut(s) 133
SacII CCGCGG 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 584
SaqAI TTAA 6 cut(s) 198, 287, 522, 560, 633, 985
SatI GCNGC 3 cut(s) 416, 729, 959
Sau3AI GATC 7 cut(s) 159, 409, 478, 551, 601, 673, 694
Sau96I GGNCC 3 cut(s) 165, 217, 648
SchI GAGTC 2 cut(s) 109, 476
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 43, 438
SfaNI GCATC 3 cut(s) 217, 708, 769
Sfr303I CCGCGG 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 183
SinI GGWCC 2 cut(s) 217, 648
SmiMI CAYNNNNRTG 1 cut(s) 133
SsiI CCGC 5 cut(s) 180, 182, 230, 546, 721
SspMI CTAG 3 cut(s) 33, 671, 794
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 895
TaaI ACNGT 5 cut(s) 28, 302, 390, 599, 830
TaiI ACGT 1 cut(s) 204
TfiI GAWTC 1 cut(s) 802
Tru1I TTAA 6 cut(s) 198, 287, 522, 560, 633, 985
Tru9I TTAA 6 cut(s) 198, 287, 522, 560, 633, 985
TseI GCWGC 3 cut(s) 415, 728, 958
TspDTI ATGAA 3 cut(s) 163, 347, 925
VpaK11BI GGWCC 2 cut(s) 217, 648
XapI RAATTY 2 cut(s) 608, 681
XceI RCATGY 2 cut(s) 623, 965
XmiI GTMKAC 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 890
XspI CTAG 3 cut(s) 33, 671, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.