pycom05g26400

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0008795
Physical Location & Seq
Forward (+)
27708176 .. 27712047
3872 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1047 bp
ATGGAAGGCGAAGAGGGGCCCACCGTCACCACCCCCGCCACCACCCCCGCCGACACCACCCCCACCGTCATCACATGCGGCACCGACGCCCCCCCACCGTCTCCCCCGCACGGTTCTGATATCTCACCCGTTGGATCTCCCGGTCGCGCCTCCTCTGAGATTCAACCACATCCGTCGGATGATGACCCTGATCAATCGTGTGGGACTGGCGGTCTCTCTGAGGATCTCAAACAGAAGATTATTAAGCAGGTGGAATATTATTTCAGCGATGAAAACTTGCCCGCTGACAAGTATATGTTGAGTATGATTAAAAAGAACAAAGAAGGTTATGTTCCAATTTCAGTTATTGCTTCTTTTAGAAAAATGAAAAAGCTCATCCAAAACAATTCGTCAATAGCGGCTGCATTGAGGGAGTCTTCCCTCCTTGTAATAATAAAAGATTTGTACATACTCGACCCACATGCAATAGAAGTGTCTACAAAAGGCGGCAAGGCTAAGAAGCTGATTAGTAATAAGTTGCATGCCCTTGTGAAGTATGATACTGTGGAGGCTGCTGACAAAGCTGTCACTACTTTAAATAATGAAGAGGATTGGAGAAATGGCATGCGGGTGAAGCGTCTAAAACGAGTGGGGAAGTATGGACAGAGAAAACAACCCTGGAGGGGTTTCGAATCTGAGAAGAGTAGCGGCAACAGAAGTAATGATCAAACAGGAGACAAGGAGAATCATACTGTAAGTGTGAAACATAATGATGCACGGACAACTGATGAAGGGGTAAGCGGTGGTTATGCTCATGAGCAATTGGTGTTATTTTTGTTGGAGTCGTTGATGGATCCAGTTCCATACAAGTGTTTCATTACACTCGACTGGTTTTTAAGTTTTGACCTCTTTGCTTCTGCCGTTCTAGGACGGAGAGCGAGTCATGGGACTACTTCGGCCAATCACGGCATTGAACCTTGGAAGCCACCACCCGGCCCAAGGATGCCTGACGGAACCAGGGGATTCACAATGGGGCGAGGGCGGACTCTGAGCACGGCCCAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La RRM_1

Protein Analysis

349

Amino Acids

38.05

Weight (kDa)

7.72

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 80 - 138 5.2e-26 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
AasI GACNNNNNNGTC 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 476
AccII CGCG 1 cut(s) 147
AclWI GGATC 4 cut(s) 142, 231, 827, 840
AcoI YGGCCR 1 cut(s) 936
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 4 cut(s) 110, 662, 971, 978
AgsI TTSAA 2 cut(s) 164, 953
AhdI GACNNNNNGTC 1 cut(s) 210
AjnI CCWGG 2 cut(s) 656, 995
AluBI AGCT 3 cut(s) 373, 502, 563
AluI AGCT 3 cut(s) 373, 502, 563
Alw21I GWGCWC 1 cut(s) 1034
Alw26I GTCTC 3 cut(s) 105, 218, 708
AlwI GGATC 4 cut(s) 142, 231, 827, 840
AoxI GGCC 4 cut(s) 17, 936, 973, 1035
ApaI GGGCCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 401, 551
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 4 cut(s) 17, 18, 974, 1036
AsuC2I CCSGG 2 cut(s) 141, 972
AsuHPI GGTGA 3 cut(s) 19, 117, 622
AsuII TTCGAA 1 cut(s) 669
BaeGI GKGCMC 1 cut(s) 21
BamHI GGATCC 1 cut(s) 832
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 1034
BbvI GCAGC 2 cut(s) 388, 538
BccI CCATC 1 cut(s) 823
BceAI ACGGC 2 cut(s) 884, 961
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 2 cut(s) 658, 997
BclI TGATCA 2 cut(s) 190, 703
BcnI CCSGG 2 cut(s) 141, 972
BcoDI GTCTC 3 cut(s) 105, 218, 708
BfaI CTAG 1 cut(s) 905
BfuAI ACCTGC 1 cut(s) 238
BisI GCNGC 6 cut(s) 79, 399, 402, 487, 552, 688
BlsI GCNGC 6 cut(s) 80, 400, 403, 488, 553, 689
Bme1390I CCNGG 4 cut(s) 141, 658, 972, 997
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 4 cut(s) 17, 18, 974, 1036
BmiI GGNNCC 5 cut(s) 18, 19, 82, 834, 994
BmrFI CCNGG 4 cut(s) 141, 658, 972, 997
BmsI GCATC 2 cut(s) 742, 972
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 679
Bpu14I TTCGAA 1 cut(s) 669
BpuMI CCSGG 2 cut(s) 141, 972
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 4 cut(s) 656, 956, 977, 996
BsaXI ACNNNNNCTCC 2 cut(s) 904, 934
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 662, 971, 978
Bse1I ACTGG 3 cut(s) 211, 836, 872
BseBI CCWGG 2 cut(s) 658, 997
BseDI CCNNGG 4 cut(s) 656, 956, 977, 996
BseGI GGATG 4 cut(s) 169, 184, 375, 987
BseLI CCNNNNNNNGG 4 cut(s) 110, 662, 971, 978
BseMII CTCAG 4 cut(s) 147, 210, 666, 1019
BseNI ACTGG 3 cut(s) 211, 836, 872
BseRI GAGGAG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 2 cut(s) 388, 538
Bsh1236I CGCG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 4 cut(s) 19, 938, 975, 1037
BshNI GGYRCC 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 1034
BsiSI CCGG 2 cut(s) 141, 972
BslFI GGGAC 2 cut(s) 217, 940
BslI CCNNNNNNNGG 4 cut(s) 110, 662, 971, 978
BsmAI GTCTC 3 cut(s) 105, 218, 708
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 2 cut(s) 217, 940
BsnI GGCC 4 cut(s) 19, 938, 975, 1037
Bso31I GGTCTC 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 669
Bsp120I GGGCCC 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 21, 1034
Bsp1407I TGTACA 1 cut(s) 444
Bsp143I GATC 5 cut(s) 134, 190, 223, 703, 832
BspANI GGCC 4 cut(s) 19, 938, 975, 1037
BspCNI CTCAG 4 cut(s) 148, 211, 667, 1020
BspFNI CGCG 1 cut(s) 147
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 5 cut(s) 18, 19, 82, 834, 994
BspMI ACCTGC 1 cut(s) 238
BspPI GGATC 4 cut(s) 142, 231, 827, 840
BspT104I TTCGAA 1 cut(s) 669
BspT107I GGYRCC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 444
BsrI ACTGG 3 cut(s) 211, 836, 872
BssECI CCNNGG 4 cut(s) 656, 956, 977, 996
BssMI GATC 5 cut(s) 134, 190, 223, 703, 832
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 956, 977
Bst2UI CCWGG 2 cut(s) 658, 997
Bst4CI ACNGT 6 cut(s) 25, 67, 99, 113, 544, 733
Bst6I CTCTTC 3 cut(s) 6, 579, 674
BstACI GRCGYC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 444
BstBI TTCGAA 1 cut(s) 669
BstC8I GCNNGC 3 cut(s) 282, 522, 605
BstDEI CTNAG 5 cut(s) 156, 219, 495, 675, 1028
BstF5I GGATG 4 cut(s) 169, 184, 375, 987
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 5 cut(s) 137, 193, 226, 706, 835
BstMAI GTCTC 3 cut(s) 105, 218, 708
BstMBI GATC 5 cut(s) 134, 190, 223, 703, 832
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 560, 613
BstNI CCWGG 2 cut(s) 658, 997
BstNSI RCATGY 4 cut(s) 78, 464, 524, 607
BstSCI CCNGG 4 cut(s) 139, 656, 970, 995
BstSLI GKGCMC 1 cut(s) 21
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 388, 538
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 3 cut(s) 134, 223, 832
BstYI RGATCY 3 cut(s) 134, 223, 832
BsuRI GGCC 4 cut(s) 19, 938, 975, 1037
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 4 cut(s) 169, 184, 375, 987
BveI ACCTGC 1 cut(s) 238
Cac8I GCNNGC 3 cut(s) 282, 522, 605
CciI TCATGA 1 cut(s) 793
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 4 cut(s) 17, 18, 974, 1036
CseI GACGC 2 cut(s) 95, 605
Csp6I GTAC 1 cut(s) 445
CviAII CATG 6 cut(s) 75, 461, 521, 604, 794, 923
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 5 cut(s) 156, 219, 495, 675, 1028
DpnI GATC 5 cut(s) 136, 192, 225, 705, 834
DpnII GATC 5 cut(s) 134, 190, 223, 703, 832
DraI TTTAAA 1 cut(s) 576
DrdI GACNNNNNNGTC 1 cut(s) 563
DriI GACNNNNNGTC 1 cut(s) 210
DseDI GACNNNNNNGTC 1 cut(s) 563
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 3 cut(s) 6, 579, 674
Eam1105I GACNNNNNGTC 1 cut(s) 210
EarI CTCTTC 3 cut(s) 6, 579, 674
EciI GGCGGA 1 cut(s) 1036
Eco130I CCWWGG 2 cut(s) 956, 977
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 218
Eco32I GATATC 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 656, 995
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 956, 977
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 2 cut(s) 956, 977
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 6 cut(s) 78, 464, 524, 607, 797, 926
FaqI GGGAC 2 cut(s) 217, 940
FatI CATG 6 cut(s) 74, 460, 520, 603, 793, 922
FauI CCCGC 5 cut(s) 43, 55, 114, 289, 600
FbaI TGATCA 2 cut(s) 190, 703
FblI GTMKAC 1 cut(s) 476
Fnu4HI GCNGC 6 cut(s) 79, 399, 402, 487, 552, 688
FokI GGATG 4 cut(s) 156, 191, 362, 994
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 6 cut(s) 79, 399, 402, 487, 552, 688
FspBI CTAG 1 cut(s) 905
GlaI GCGC 1 cut(s) 148
GluI GCNGC 6 cut(s) 79, 399, 402, 487, 552, 688
GsuI CTGGAG 1 cut(s) 679
HaeIII GGCC 4 cut(s) 19, 938, 975, 1037
HapII CCGG 2 cut(s) 141, 972
HgaI GACGC 2 cut(s) 95, 605
HhaI GCGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 6 cut(s) 78, 464, 524, 607, 797, 926
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 8 cut(s) 160, 413, 671, 724, 821, 919, 1002, 1024
HpaII CCGG 2 cut(s) 141, 972
HphI GGTGA 3 cut(s) 19, 117, 622
Hpy166II GTNNAC 1 cut(s) 477
Hpy188I TCNGA 6 cut(s) 118, 157, 178, 220, 676, 1029
Hpy188III TCNNGA 1 cut(s) 794
Hpy8I GTNNAC 1 cut(s) 477
Hpy99I CGWCG 2 cut(s) 89, 178
HpyAV CCTTC 2 cut(s) 317, 764
HpyCH4III ACNGT 6 cut(s) 25, 67, 99, 113, 544, 733
HpyCH4V TGCA 4 cut(s) 404, 464, 520, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 560, 613
HpyF3I CTNAG 5 cut(s) 156, 219, 495, 675, 1028
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 6 cut(s) 78, 464, 524, 607, 797, 926
HspAI GCGC 1 cut(s) 147
Ksp22I TGATCA 2 cut(s) 190, 703
Kzo9I GATC 5 cut(s) 134, 190, 223, 703, 832
Lsp1109I GCAGC 2 cut(s) 388, 538
LweI GCATC 2 cut(s) 742, 972
MaeI CTAG 1 cut(s) 905
MaeIII GTNAC 2 cut(s) 25, 565
MalI GATC 5 cut(s) 136, 192, 225, 705, 834
MboI GATC 5 cut(s) 134, 190, 223, 703, 832
MboII GAAGA 5 cut(s) 23, 247, 408, 596, 691
MfeI CAATTG 1 cut(s) 800
MflI RGATCY 3 cut(s) 134, 223, 832
MhlI GDGCHC 2 cut(s) 21, 1034
MluCI AATT 3 cut(s) 336, 385, 800
MlyI GAGTC 4 cut(s) 422, 830, 928, 1018
MmeI TCCRAC 3 cut(s) 112, 156, 798
MseI TTAA 4 cut(s) 243, 309, 575, 875
MslI CAYNNNNRTG 3 cut(s) 608, 750, 847
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 2 cut(s) 141, 972
MspR9I CCNGG 4 cut(s) 141, 658, 972, 997
MunI CAATTG 1 cut(s) 800
MvaI CCWGG 2 cut(s) 658, 997
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 560, 613
NciI CCSGG 2 cut(s) 141, 972
NdeII GATC 5 cut(s) 134, 190, 223, 703, 832
NlaIII CATG 6 cut(s) 78, 464, 524, 607, 797, 926
NlaIV GGNNCC 5 cut(s) 18, 19, 82, 834, 994
NmuCI GTSAC 2 cut(s) 25, 565
NspI RCATGY 4 cut(s) 78, 464, 524, 607
NspV TTCGAA 1 cut(s) 669
PaeI GCATGC 2 cut(s) 524, 607
PagI TCATGA 1 cut(s) 793
PaqCI CACCTGC 1 cut(s) 238
PfeI GAWTC 4 cut(s) 160, 671, 724, 1002
PkrI GCNGC 6 cut(s) 80, 400, 403, 488, 553, 689
PleI GAGTC 4 cut(s) 421, 829, 927, 1018
PpsI GAGTC 4 cut(s) 421, 829, 927, 1018
Psp6I CCWGG 2 cut(s) 656, 995
PspGI CCWGG 2 cut(s) 656, 995
PspN4I GGNNCC 5 cut(s) 18, 19, 82, 834, 994
PspOMI GGGCCC 1 cut(s) 17
PspPI GGNCC 4 cut(s) 17, 18, 974, 1036
PsuI RGATCY 3 cut(s) 134, 223, 832
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 3 cut(s) 608, 750, 847
SaqAI TTAA 4 cut(s) 243, 309, 575, 875
SatI GCNGC 6 cut(s) 79, 399, 402, 487, 552, 688
Sau3AI GATC 5 cut(s) 134, 190, 223, 703, 832
Sau96I GGNCC 4 cut(s) 17, 18, 974, 1036
SchI GAGTC 4 cut(s) 422, 830, 928, 1018
ScrFI CCNGG 4 cut(s) 141, 658, 972, 997
SduI GDGCHC 2 cut(s) 21, 1034
SetI ASST 7 cut(s) 252, 328, 375, 504, 565, 888, 958
SfaNI GCATC 2 cut(s) 742, 972
SfuI TTCGAA 1 cut(s) 669
SmiMI CAYNNNNRTG 3 cut(s) 608, 750, 847
SphI GCATGC 2 cut(s) 524, 607
Sse9I AATT 3 cut(s) 336, 385, 800
SspI AATATT 1 cut(s) 257
SspMI CTAG 1 cut(s) 905
StyD4I CCNGG 4 cut(s) 139, 656, 970, 995
StyI CCWWGG 2 cut(s) 956, 977
TaaI ACNGT 6 cut(s) 25, 67, 99, 113, 544, 733
TaqI TCGA 3 cut(s) 453, 669, 864
TasI AATT 3 cut(s) 336, 385, 800
TatI WGTACW 1 cut(s) 444
TauI GCSGC 4 cut(s) 81, 401, 489, 690
TfiI GAWTC 4 cut(s) 160, 671, 724, 1002
Tru1I TTAA 4 cut(s) 243, 309, 575, 875
Tru9I TTAA 4 cut(s) 243, 309, 575, 875
TseFI GTSAC 2 cut(s) 25, 565
TseI GCWGC 2 cut(s) 401, 551
Tsp45I GTSAC 2 cut(s) 25, 565
TspDTI ATGAA 5 cut(s) 285, 380, 597, 783, 844
TspGWI ACGGA 4 cut(s) 162, 772, 925, 1005
XceI RCATGY 4 cut(s) 78, 464, 524, 607
XmiI GTMKAC 1 cut(s) 476
XspI CTAG 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.