Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010401

Physical Location & Seq

Genomic Coordinates Reverse (-)

29185050 .. 29189038

Gene Structure 3989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28480.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGGCGTCCATTCAATCTATCTTTCTCCACGCTCCTCTCTTTCCCCTGAGACCCCGCCACCTCTCCCTTATGACCCTCGAACCCCCTCGAAATGTCCATTTTACCCTTGCCCGCTCTTCCGATCGGAAAGCCGTCCCAGTCACAGAGCAGGAGGTCCTCCAAGCCGTGGCCGAGTCCGACGAGAAAGTCCTCCCCGGCGTGAGAACGTACGAGAACGACGCTGCTCGGTTCACTTTAGTCGGCGCTGTCGAATTCGAGCAGGCTCTGACGGCTGCTGCTGCCGACGGAGGACAAGCAGCCGACGAGCACATCAGCTCGGGGATGCCCGCTATGGTAGTGGAGACCTTATTCCCGGGTCATCCGGGCCCCCGCAGCACAGTTTCGACCCGACTGTTTCTGCCTGCTAGGAAAGTTAAAGAGAAAGCCGGCAAACTGAGAAGGTCCATCACCGATGATATGCTGTCAACCACTACGTCGAGAAACATTCTTTCGATGACATTTAGGCAAGTAGTGCTACACCTGCTGTGGAACTTTGAGCTGGTTGTCTTTAAATCGGGAACGGAAAGGGATATGGAGGATCTCGAGAACCCAAGAGAGCAGGTCCCTGCATCTTTCGCCCTTAGTTCATCGGATGAACGGATTATCTCTGTGCTTGCCGAAGTTGTGTGCAGCTCTGCTCTTGAAAGCACTGAAAAACAATTTCTTGAAGATTACGCAGGCAAAACTTCAAGTAATCTTCTCCGCTGGTTCCGAAAGCCTAAAAGGACTGTGTCAGAAGATTCCTCAGTTGTCATATACAAATTATTTGAAGATGAGATAATTGAAAATGCTAAGAGTTTGCTGGACCTTTTTAATTCAACAAAGGGAAGTTTTAAGCCCGTAAAAACAAAATCAAAGAACTATTGGTGGACACCAACTGCACTCTCTAAATTGGAAAAGATTGGTGGTCCTGAGTTTAGTTCGTGGACTAGCGAGTATGTTCCTGCTTATAGGCTAGAAATTGATGCTAATCAACATGAGAATGTGAAATTTGAAGGTTGGAGAAAATCTGCAGAGAATAAATGTGAAGTTCTCTTGACACACTCCCAAATGGTTGGATTGGCGGACCTAATAGATATGTATTACGAAGATCCTTACACAATGCCAGATAAACAGCTATCATGTGGTGTTGTTGCCAATTCTGCTAATTTTTCTAATAAAAAGACGGGTTCTTTCTTGTTAAGAATGCTACCTATCACCATTGCGAGTGGAATTTTTCTCATAACAATTAGTGCTCTTTGTCAACGTGGTTTTCCTTACCCAAATAAAGGTGGAAAGTACTCTAGAGAACACATTTCAATTCCATCATCTGAAGTTGGTAGTGCACTATACCAGTCGGTGGATGCTGTGAAGTTGGAAGCATTTTGCATATCAGTTGTCAGAAAGATAAAGGATGCCCTGGGTTGGCCGGGTGAGATCATGATGGAAACAGATGTGGGTGCTTGGACTGGTAAAGTACCAAATTATTTGAGGATGGTAGGTGATGATTGTTCCAACAACGAAGCAATGTCAACTATTTCTTCTTCTGAGAAAATTGATGAAGACTTGAAAGCATCAGCACAAGATATTGCAAGTTATCAGGTGGTTCTGTCAACTGATGGTGAGATAGTCGGGTTCCAACCTTTAAGCAGTGTGGCTGTTAACCATTGGGCTGCCAATCCCTTGGCAAAAGAGTTATACAGGGGGCGAAAGCTTTCACCTGGTTTAACTGAACCCGGTCTTAAGGTCCAGCGTCCGAACGAGGTCGCCCTCATAGAGTTGTTAATGTCAGTAAAACCAGATGGCTGCTTTGCTTTGGCCAGGCCAGTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

618

Amino Acids

68.37

Weight (kDa)

6.04

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28530 AT1G28530
fragaria_vesca	FvH4_3g08370
malus_domestica	MD05G1308100.v1.1
prunus_persica	Prupe.4G054700_v2.0.a1 Prupe.4G054700_v2.0.a1 Prupe.4G054700_v2.0.a1 Prupe.4G054700_v2.0.a1
pyrus_communis	pycom05g28480
rosa_chinensis	RchiOBHm_Chr5g0009531
rosa_laevigata	RLG00000031669
rosa_multiflora	Rmu_sc0002711.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066600 Rroxscaffold_1G00067300
rosa_rugosa	Rorug04G0444100 Rorug04G0444200
rosa_samantha	Rh5AG075600 Rh5BG070800 Rh5CG083500 Rh5DG071200
rosa_wichuraiana	Rw5G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	528
AasI	GACNNNNNNGTC	1 cut(s)	185
Acc36I	ACCTGC	2 cut(s)	528, 589
AccB7I	CCANNNNNTGG	2 cut(s)	166, 1378
AccBSI	CCGCTC	1 cut(s)	114
AciI	CCGC	6 cut(s)	55, 112, 327, 370, 742, 1103
AclWI	GGATC	2 cut(s)	585, 1124
AcoI	YGGCCR	3 cut(s)	168, 1445, 1836
AcsI	RAATTY	3 cut(s)	251, 1028, 1251
AcuI	CTGAAG	1 cut(s)	1371
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	209, 1319, 1497
AfiI	CCNNNNNNNGG	4 cut(s)	166, 1307, 1378, 1443
AflII	CTTAAG	1 cut(s)	1760
AjnI	CCWGG	3 cut(s)	1437, 1738, 1838
AluBI	AGCT	5 cut(s)	315, 538, 672, 1156, 1732
AluI	AGCT	5 cut(s)	315, 538, 672, 1156, 1732
Alw21I	GWGCWC	3 cut(s)	309, 1276, 1366
Alw26I	GTCTC	2 cut(s)	43, 335
Alw44I	GTGCAC	1 cut(s)	1362
AlwI	GGATC	2 cut(s)	585, 1124
AlwNI	CAGNNNCTG	1 cut(s)	265
Ama87I	CYCGRG	3 cut(s)	316, 352, 581
AoxI	GGCC	5 cut(s)	168, 364, 1445, 1836, 1841
ApaI	GGGCCC	1 cut(s)	368
ApaLI	GTGCAC	1 cut(s)	1362
ApeKI	GCWGC	9 cut(s)	221, 272, 275, 278, 296, 372, 669, 1691, 1824
ApoI	RAATTY	3 cut(s)	251, 1028, 1251
Asp700I	GAANNNNTTC	1 cut(s)	1732
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	9 cut(s)	154, 364, 365, 441, 601, 844, 947, 1105, 1765
AsuC2I	CCSGG	6 cut(s)	195, 353, 354, 363, 1449, 1755
AsuHPI	GGTGA	6 cut(s)	439, 1228, 1463, 1532, 1652, 1728
AvaI	CYCGRG	3 cut(s)	316, 352, 581
AvaII	GGWCC	7 cut(s)	154, 441, 601, 844, 947, 1105, 1765
BaeGI	GKGCMC	2 cut(s)	368, 1366
BalI	TGGCCA	1 cut(s)	1838
BanII	GRGCYC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	1587
Bbv12I	GWGCWC	3 cut(s)	309, 1276, 1366
BbvI	GCAGC	9 cut(s)	208, 259, 262, 265, 308, 384, 681, 1678, 1811
BccI	CCATC	6 cut(s)	452, 1351, 1456, 1507, 1631, 1814
BceAI	ACGGC	3 cut(s)	116, 149, 285
BciT130I	CCWGG	3 cut(s)	1439, 1740, 1840
BcnI	CCSGG	6 cut(s)	195, 353, 354, 363, 1449, 1755
BcoDI	GTCTC	2 cut(s)	43, 335
BfaI	CTAG	4 cut(s)	405, 969, 995, 1323
BfmI	CTRYAG	1 cut(s)	1050
BfoI	RGCGCY	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	1760
BfuAI	ACCTGC	2 cut(s)	528, 589
BisI	GCNGC	9 cut(s)	222, 273, 276, 279, 297, 373, 670, 1692, 1825
BlsI	GCNGC	9 cut(s)	223, 274, 277, 280, 298, 374, 671, 1693, 1826
BmcAI	AGTACT	1 cut(s)	1319
Bme1390I	CCNGG	9 cut(s)	195, 353, 354, 363, 1439, 1449, 1740, 1755, 1840
Bme18I	GGWCC	7 cut(s)	154, 441, 601, 844, 947, 1105, 1765
BmeT110I	CYCGRG	3 cut(s)	316, 352, 581
BmgT120I	GGNCC	9 cut(s)	154, 364, 365, 441, 601, 844, 947, 1105, 1765
BmiI	GGNNCC	5 cut(s)	366, 367, 603, 749, 1655
BmrFI	CCNGG	9 cut(s)	195, 353, 354, 363, 1439, 1449, 1740, 1755, 1840
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	6 cut(s)	312, 617, 994, 1372, 1423, 1601
BmuI	ACTGGG	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	1587
BpuMI	CCSGG	6 cut(s)	195, 353, 354, 363, 1449, 1755
BsaBI	GATNNNNATC	1 cut(s)	1008
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	43, 335
BsaJI	CCNNGG	6 cut(s)	165, 193, 352, 1437, 1438, 1701
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 1307, 1378, 1443
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	4 cut(s)	137, 1372, 1492, 1844
Bse3DI	GCAATG	2 cut(s)	1239, 1551
Bse8I	GATNNNNATC	1 cut(s)	1008
BseBI	CCWGG	3 cut(s)	1439, 1740, 1840
BseDI	CCNNGG	6 cut(s)	165, 193, 352, 1437, 1438, 1701
BseGI	GGATG	6 cut(s)	327, 358, 637, 1387, 1438, 1518
BseJI	GATNNNNATC	1 cut(s)	1008
BseLI	CCNNNNNNNGG	4 cut(s)	166, 1307, 1378, 1443
BseMI	GCAATG	2 cut(s)	1239, 1551
BseMII	CTCAG	5 cut(s)	38, 425, 798, 942, 1557
BseNI	ACTGG	4 cut(s)	137, 1372, 1492, 1844
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	2 cut(s)	368, 1366
BseXI	GCAGC	9 cut(s)	208, 259, 262, 265, 308, 384, 681, 1678, 1811
BsgI	GTGCAG	2 cut(s)	688, 903
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	5 cut(s)	170, 366, 1447, 1838, 1843
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	309, 1276, 1366
BsiHKCI	CYCGRG	3 cut(s)	316, 352, 581
BsiSI	CCGG	6 cut(s)	195, 353, 362, 426, 1448, 1755
BsiWI	CGTACG	1 cut(s)	207
BslFI	GGGAC	2 cut(s)	119, 587
BslI	CCNNNNNNNGG	4 cut(s)	166, 1307, 1378, 1443
BsmAI	GTCTC	2 cut(s)	43, 335
BsmFI	GGGAC	2 cut(s)	119, 587
BsmI	GAATGC	1 cut(s)	1230
BsnI	GGCC	5 cut(s)	170, 366, 1447, 1838, 1843
Bso31I	GGTCTC	2 cut(s)	43, 335
BsoBI	CYCGRG	3 cut(s)	316, 352, 581
Bsp120I	GGGCCC	1 cut(s)	364
Bsp1286I	GDGCHC	4 cut(s)	309, 368, 1276, 1366
Bsp143I	GATC	4 cut(s)	121, 577, 1129, 1455
BspACI	CCGC	6 cut(s)	55, 112, 327, 370, 742, 1103
BspANI	GGCC	5 cut(s)	170, 366, 1447, 1838, 1843
BspCNI	CTCAG	5 cut(s)	39, 426, 797, 943, 1558
BspHI	TCATGA	1 cut(s)	1458
BspLI	GGNNCC	5 cut(s)	366, 367, 603, 749, 1655
BspMAI	CTGCAG	1 cut(s)	1054
BspMI	ACCTGC	2 cut(s)	528, 589
BspPI	GGATC	2 cut(s)	585, 1124
BspQI	GCTCTTC	1 cut(s)	121
BspTI	CTTAAG	1 cut(s)	1760
BspTNI	GGTCTC	2 cut(s)	43, 335
BsrBI	CCGCTC	1 cut(s)	114
BsrDI	GCAATG	2 cut(s)	1239, 1551
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	4 cut(s)	137, 1372, 1492, 1844
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	6 cut(s)	165, 193, 352, 1437, 1438, 1701
BssMI	GATC	4 cut(s)	121, 577, 1129, 1455
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	1701
Bst2UI	CCWGG	3 cut(s)	1439, 1740, 1840
Bst4CI	ACNGT	3 cut(s)	379, 393, 769
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	1760
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstC8I	GCNNGC	7 cut(s)	112, 261, 327, 402, 427, 654, 718
BstDEI	CTNAG	7 cut(s)	47, 434, 620, 784, 831, 951, 1566
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	6 cut(s)	327, 358, 637, 1387, 1438, 1518
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	4 cut(s)	124, 580, 1132, 1458
BstMAI	GTCTC	2 cut(s)	43, 335
BstMBI	GATC	4 cut(s)	121, 577, 1129, 1455
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	7 cut(s)	269, 278, 372, 511, 520, 614, 1181
BstNI	CCWGG	3 cut(s)	1439, 1740, 1840
BstSCI	CCNGG	9 cut(s)	193, 351, 352, 361, 1437, 1447, 1738, 1753, 1838
BstSFI	CTRYAG	1 cut(s)	1050
BstSLI	GKGCMC	2 cut(s)	368, 1366
BstV1I	GCAGC	9 cut(s)	208, 259, 262, 265, 308, 384, 681, 1678, 1811
BstV2I	GAAGAC	1 cut(s)	1587
BstX2I	RGATCY	2 cut(s)	577, 1129
BstXI	CCANNNNNNTGG	2 cut(s)	1094, 1702
BstYI	RGATCY	2 cut(s)	577, 1129
BsuRI	GGCC	5 cut(s)	170, 366, 1447, 1838, 1843
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	6 cut(s)	327, 358, 637, 1387, 1438, 1518
BtsI	GCAGTG	1 cut(s)	1675
BtsIMutI	CAGTG	2 cut(s)	687, 1675
BveI	ACCTGC	2 cut(s)	528, 589
Cac8I	GCNNGC	7 cut(s)	112, 261, 327, 402, 427, 654, 718
CaiI	CAGNNNCTG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	1458
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	9 cut(s)	154, 364, 365, 441, 601, 844, 947, 1105, 1765
Cfr9I	CCCGGG	1 cut(s)	352
CseI	GACGC	2 cut(s)	227, 1760
CsiI	ACCWGGT	1 cut(s)	1738
Csp6I	GTAC	3 cut(s)	208, 1318, 1496
CviAII	CATG	3 cut(s)	1016, 1161, 1459
CviQI	GTAC	3 cut(s)	208, 1318, 1496
DdeI	CTNAG	7 cut(s)	47, 434, 620, 784, 831, 951, 1566
DpnI	GATC	4 cut(s)	123, 579, 1131, 1457
DpnII	GATC	4 cut(s)	121, 577, 1129, 1455
DraI	TTTAAA	1 cut(s)	550
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	3 cut(s)	168, 1445, 1836
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	1118
Eco130I	CCWWGG	1 cut(s)	1701
Eco24I	GRGCYC	1 cut(s)	368
Eco31I	GGTCTC	2 cut(s)	43, 335
Eco47I	GGWCC	7 cut(s)	154, 441, 601, 844, 947, 1105, 1765
Eco57I	CTGAAG	1 cut(s)	1371
Eco88I	CYCGRG	3 cut(s)	316, 352, 581
EcoO109I	RGGNCCY	3 cut(s)	154, 365, 601
EcoRI	GAATTC	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	1437, 1738, 1838
EcoT14I	CCWWGG	1 cut(s)	1701
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	1701
FaeI	CATG	3 cut(s)	1019, 1164, 1462
FaqI	GGGAC	2 cut(s)	119, 587
FatI	CATG	3 cut(s)	1015, 1160, 1458
FauI	CCCGC	4 cut(s)	62, 119, 334, 377
Fnu4HI	GCNGC	9 cut(s)	222, 273, 276, 279, 297, 373, 670, 1692, 1825
FokI	GGATG	6 cut(s)	334, 345, 644, 1394, 1445, 1525
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	9 cut(s)	222, 273, 276, 279, 297, 373, 670, 1692, 1825
FspBI	CTAG	4 cut(s)	405, 969, 995, 1323
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	9 cut(s)	222, 273, 276, 279, 297, 373, 670, 1692, 1825
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	5 cut(s)	170, 366, 1447, 1838, 1843
HapII	CCGG	6 cut(s)	195, 353, 362, 426, 1448, 1755
HgaI	GACGC	2 cut(s)	227, 1760
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	1019, 1164, 1462
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	5 cut(s)	465, 1283, 1551, 1632, 1681
HindII	GTYRAC	5 cut(s)	465, 1283, 1551, 1632, 1681
HindIII	AAGCTT	1 cut(s)	1730
HinfI	GANTC	2 cut(s)	173, 779
HpaI	GTTAAC	1 cut(s)	1681
HpaII	CCGG	6 cut(s)	195, 353, 362, 426, 1448, 1755
HphI	GGTGA	6 cut(s)	439, 1228, 1463, 1532, 1652, 1728
Hpy166II	GTNNAC	9 cut(s)	231, 465, 909, 966, 1283, 1364, 1551, 1632, 1681
Hpy8I	GTNNAC	9 cut(s)	231, 465, 909, 966, 1283, 1364, 1551, 1632, 1681
Hpy99I	CGWCG	5 cut(s)	182, 221, 287, 305, 478
HpyAV	CCTTC	2 cut(s)	432, 1028
HpyCH4III	ACNGT	3 cut(s)	379, 393, 769
HpyCH4IV	ACGT	3 cut(s)	206, 473, 1285
HpyCH4V	TGCA	7 cut(s)	608, 669, 920, 1052, 1364, 1407, 1610
HpyF10VI	GCNNNNNNNGC	7 cut(s)	269, 278, 372, 511, 520, 614, 1181
HpyF3I	CTNAG	7 cut(s)	47, 434, 620, 784, 831, 951, 1566
HpySE526I	ACGT	3 cut(s)	206, 473, 1285
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	1019, 1164, 1462
HspAI	GCGC	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
KspAI	GTTAAC	1 cut(s)	1681
Kzo9I	GATC	4 cut(s)	121, 577, 1129, 1455
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	9 cut(s)	208, 259, 262, 265, 308, 384, 681, 1678, 1811
LweI	GCATC	6 cut(s)	312, 617, 994, 1372, 1423, 1601
MabI	ACCWGGT	1 cut(s)	1738
MaeI	CTAG	4 cut(s)	405, 969, 995, 1323
MaeII	ACGT	3 cut(s)	206, 473, 1285
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	4 cut(s)	123, 579, 1131, 1457
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	4 cut(s)	121, 577, 1129, 1455
MboII	GAAGA	9 cut(s)	108, 719, 728, 788, 821, 1139, 1551, 1554, 1592
MflI	RGATCY	2 cut(s)	577, 1129
MhlI	GDGCHC	4 cut(s)	309, 368, 1276, 1366
MlsI	TGGCCA	1 cut(s)	1838
MluNI	TGGCCA	1 cut(s)	1838
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	6 cut(s)	201, 1019, 1075, 1374, 1557, 1681
Mox20I	TGGCCA	1 cut(s)	1838
MroNI	GCCGGC	1 cut(s)	425
MroXI	GAANNNNTTC	1 cut(s)	1732
MscI	TGGCCA	1 cut(s)	1838
MslI	CAYNNNNRTG	1 cut(s)	1020
Msp20I	TGGCCA	1 cut(s)	1838
MspA1I	CMGCKG	1 cut(s)	744
MspCI	CTTAAG	1 cut(s)	1760
MspI	CCGG	6 cut(s)	195, 353, 362, 426, 1448, 1755
MspR9I	CCNGG	9 cut(s)	195, 353, 354, 363, 1439, 1449, 1740, 1755, 1840
Mva1269I	GAATGC	1 cut(s)	1230
MvaI	CCWGG	3 cut(s)	1439, 1740, 1840
MwoI	GCNNNNNNNGC	7 cut(s)	269, 278, 372, 511, 520, 614, 1181
NaeI	GCCGGC	1 cut(s)	427
NciI	CCSGG	6 cut(s)	195, 353, 354, 363, 1449, 1755
NdeII	GATC	4 cut(s)	121, 577, 1129, 1455
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	3 cut(s)	1019, 1164, 1462
NlaIV	GGNNCC	5 cut(s)	366, 367, 603, 749, 1655
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	581
PagI	TCATGA	1 cut(s)	1458
PaqCI	CACCTGC	1 cut(s)	528
PasI	CCCWGGG	1 cut(s)	1438
PciSI	GCTCTTC	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	1230
PdiI	GCCGGC	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	1732
PfeI	GAWTC	1 cut(s)	779
Pfl23II	CGTACG	1 cut(s)	207
PflFI	GACNNNGTC	1 cut(s)	769
PflMI	CCANNNNNTGG	2 cut(s)	166, 1378
PkrI	GCNGC	9 cut(s)	223, 274, 277, 280, 298, 374, 671, 1693, 1826
Ple19I	CGATCG	1 cut(s)	124
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PpuMI	RGGWCCY	2 cut(s)	154, 601
Psp5II	RGGWCCY	2 cut(s)	154, 601
Psp6I	CCWGG	3 cut(s)	1437, 1738, 1838
PspGI	CCWGG	3 cut(s)	1437, 1738, 1838
PspLI	CGTACG	1 cut(s)	207
PspN4I	GGNNCC	5 cut(s)	366, 367, 603, 749, 1655
PspOMI	GGGCCC	1 cut(s)	364
PspPI	GGNCC	9 cut(s)	154, 364, 365, 441, 601, 844, 947, 1105, 1765
PspPPI	RGGWCCY	2 cut(s)	154, 601
PstI	CTGCAG	1 cut(s)	1054
PstNI	CAGNNNCTG	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	577, 1129
PsyI	GACNNNGTC	1 cut(s)	769
PvuI	CGATCG	1 cut(s)	124
RsaI	GTAC	3 cut(s)	209, 1319, 1497
RsaNI	GTAC	3 cut(s)	208, 1318, 1496
RseI	CAYNNNNRTG	1 cut(s)	1020
SapI	GCTCTTC	1 cut(s)	121
SatI	GCNGC	9 cut(s)	222, 273, 276, 279, 297, 373, 670, 1692, 1825
Sau3AI	GATC	4 cut(s)	121, 577, 1129, 1455
Sau96I	GGNCC	9 cut(s)	154, 364, 365, 441, 601, 844, 947, 1105, 1765
ScaI	AGTACT	1 cut(s)	1319
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	9 cut(s)	195, 353, 354, 363, 1439, 1449, 1740, 1755, 1840
SduI	GDGCHC	4 cut(s)	309, 368, 1276, 1366
SexAI	ACCWGGT	1 cut(s)	1738
SfaNI	GCATC	6 cut(s)	312, 617, 994, 1372, 1423, 1601
SfcI	CTRYAG	1 cut(s)	1050
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	7 cut(s)	154, 441, 601, 844, 947, 1105, 1765
SlaI	CTCGAG	1 cut(s)	581
SmaI	CCCGGG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SmlI	CTYRAG	2 cut(s)	581, 1760
SmoI	CTYRAG	2 cut(s)	581, 1760
SsiI	CCGC	6 cut(s)	55, 112, 327, 370, 742, 1103
SspMI	CTAG	4 cut(s)	405, 969, 995, 1323
StyD4I	CCNGG	9 cut(s)	193, 351, 352, 361, 1437, 1447, 1738, 1753, 1838
StyI	CCWWGG	1 cut(s)	1701
TaaI	ACNGT	3 cut(s)	379, 393, 769
TaiI	ACGT	3 cut(s)	209, 476, 1288
TaqI	TCGA	9 cut(s)	78, 88, 249, 255, 383, 476, 491, 582, 1849
TatI	WGTACW	1 cut(s)	1317
TfiI	GAWTC	1 cut(s)	779
TscAI	CASTG	2 cut(s)	694, 1675
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	9 cut(s)	221, 272, 275, 278, 296, 372, 669, 1691, 1824
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	615, 648, 1593
TspGWI	ACGGA	3 cut(s)	300, 575, 652
TspMI	CCCGGG	1 cut(s)	352
TspRI	CASTG	2 cut(s)	694, 1675
Tth111I	GACNNNGTC	1 cut(s)	769
Van91I	CCANNNNNTGG	2 cut(s)	166, 1378
Vha464I	CTTAAG	1 cut(s)	1760
VneI	GTGCAC	1 cut(s)	1362
VpaK11BI	GGWCC	7 cut(s)	154, 441, 601, 844, 947, 1105, 1765
XapI	RAATTY	3 cut(s)	251, 1028, 1251
XbaI	TCTAGA	1 cut(s)	1322
XhoI	CTCGAG	1 cut(s)	581
XmaI	CCCGGG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	1732
XspI	CTAG	4 cut(s)	405, 969, 995, 1323
ZrmI	AGTACT	1 cut(s)	1319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.