Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Forward (+)

60022366 .. 60024929

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0444100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAAAGCATAAGCATTCCGGAGTTGCCACTGCTAGCCTCCCCAAGTAGTTACAGTATTCCGGTGCAAGGTCTAGGAACGGCTGTATATCCTTTTCCTGCCTCTGAACAAAGTAGAGAAAAAGAAGCCATTCTCAGTGCAATCAAAATTGGTTACAGACATTTTGATACGGCAGCGGCTTACCAGACTGAGCAAGTTCTTGGTGAAGCTATCGGCGAAGCTATTTCTCTTGGCCTCATCAAATCCCGGGATGAACTTTTTGTTACTTCCAAGCTTTGGTGCTGTGATGCACACCCTCACCGTGTCCTCCCTGCCATTCAGAACACCCTCAAGAATCTGAGATTGGAGTACCTTAACCTTTATCCGATTCATTGGCCTGTGAGTTTGAAGACAAGAAGCTATGACTTTCCTGTTAACAAAGAGCACCTTCTTCCTACAGACTTTAAGGGGGTGTGGGAAGCCATGGAAGAGTGTCAGAAGCTAGGCCTCACCAAGTCCATTGGAGTCTGCAATTTTTCATGCAAAAAGATCGAAACCTTGCTTGCCACTGCCAAAATCCCTCCTGCAGTCAATCAAGCGGAGATGAATCCAGTATGGCAGCAGAAAAAGTTGAGAGAATTGTGTAAGAGAAAGGGTATAGTTGTCACGGCCTACTCTCCTTTGGGGGGGAAAAGGAACACCTTGGGGATCAAACGCCGTAAGGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

236

Amino Acids

26.38

Weight (kDa)

9.24

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	34 - 223	5e-41	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	2 cut(s)	176, 578
AclWI	GGATC	1 cut(s)	695
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	3 cut(s)	68, 276, 665
AgsI	TTSAA	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
AluBI	AGCT	5 cut(s)	209, 221, 274, 399, 481
AluI	AGCT	5 cut(s)	209, 221, 274, 399, 481
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	246
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	4 cut(s)	232, 374, 484, 648
ApeKI	GCWGC	2 cut(s)	173, 598
Asp700I	GAANNNNTTC	1 cut(s)	129
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	3 cut(s)	215, 290, 481
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	185, 610
BceAI	ACGGC	4 cut(s)	96, 186, 663, 681
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BcnI	CCSGG	2 cut(s)	247, 248
BfaI	CTAG	3 cut(s)	35, 74, 482
BfmI	CTRYAG	2 cut(s)	435, 564
BisI	GCNGC	3 cut(s)	174, 177, 599
BlsI	GCNGC	3 cut(s)	175, 178, 600
Bme1390I	CCNGG	2 cut(s)	247, 248
BmeT110I	CYCGRG	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	247, 248
BmsI	GCATC	1 cut(s)	277
BmtI	GCTAGC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	247, 248
BsaJI	CCNNGG	3 cut(s)	246, 462, 681
BsaWI	WCCGGW	2 cut(s)	19, 61
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 276, 665
Bse1I	ACTGG	1 cut(s)	590
BseAI	TCCGGA	1 cut(s)	19
BseDI	CCNNGG	3 cut(s)	246, 462, 681
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	3 cut(s)	68, 276, 665
BseMII	CTCAG	3 cut(s)	148, 180, 329
BseNI	ACTGG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	185, 610
BshFI	GGCC	4 cut(s)	234, 376, 486, 650
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	20, 62, 247
BslI	CCNNNNNNNGG	3 cut(s)	68, 276, 665
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	4 cut(s)	234, 376, 486, 650
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	528, 687
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	2 cut(s)	176, 578
BspANI	GGCC	4 cut(s)	234, 376, 486, 650
BspCNI	CTCAG	3 cut(s)	147, 181, 330
BspEI	TCCGGA	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	695
BsrI	ACTGG	1 cut(s)	590
BssECI	CCNNGG	3 cut(s)	246, 462, 681
BssMI	GATC	2 cut(s)	528, 687
BssT1I	CCWWGG	2 cut(s)	462, 681
Bst4CI	ACNGT	2 cut(s)	56, 302
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	36, 543
BstDEI	CTNAG	3 cut(s)	134, 189, 338
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	531, 690
BstMBI	GATC	2 cut(s)	528, 687
BstSCI	CCNGG	2 cut(s)	245, 246
BstSFI	CTRYAG	2 cut(s)	435, 564
BstV1I	GCAGC	2 cut(s)	185, 610
BstV2I	GAAGAC	1 cut(s)	395
BsuRI	GGCC	4 cut(s)	234, 376, 486, 650
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	2 cut(s)	29, 546
BtsIMutI	CAGTG	3 cut(s)	29, 142, 546
Cac8I	GCNNGC	2 cut(s)	36, 543
Cfr9I	CCCGGG	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	463, 519
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	3 cut(s)	134, 189, 338
DpnI	GATC	2 cut(s)	530, 689
DpnII	GATC	2 cut(s)	528, 687
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	462, 681
Eco147I	AGGCCT	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	462, 681
ErhI	CCWWGG	2 cut(s)	462, 681
FaeI	CATG	2 cut(s)	466, 522
FaiI	YATR	7 cut(s)	11, 88, 402, 464, 520, 595, 638
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	2 cut(s)	462, 518
Fnu4HI	GCNGC	3 cut(s)	174, 177, 599
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	3 cut(s)	174, 177, 599
FspBI	CTAG	3 cut(s)	35, 74, 482
GluI	GCNGC	3 cut(s)	174, 177, 599
HaeIII	GGCC	4 cut(s)	234, 376, 486, 650
HapII	CCGG	3 cut(s)	20, 62, 247
Hin1II	CATG	2 cut(s)	466, 522
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	4 cut(s)	334, 367, 504, 586
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	3 cut(s)	20, 62, 247
HphI	GGTGA	3 cut(s)	215, 290, 481
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	5 cut(s)	106, 321, 339, 366, 477
Hpy188III	TCNNGA	2 cut(s)	20, 331
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	2 cut(s)	56, 302
HpyCH4V	TGCA	6 cut(s)	67, 140, 290, 510, 522, 566
HpyF3I	CTNAG	3 cut(s)	134, 189, 338
Hsp92II	CATG	2 cut(s)	466, 522
Kpn2I	TCCGGA	1 cut(s)	19
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	528, 687
Lsp1109I	GCAGC	2 cut(s)	185, 610
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	3 cut(s)	35, 74, 482
MaeIII	GTNAC	4 cut(s)	50, 152, 262, 643
MalI	GATC	2 cut(s)	530, 689
MboI	GATC	2 cut(s)	528, 687
MboII	GAAGA	3 cut(s)	400, 422, 479
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	3 cut(s)	147, 511, 617
MlyI	GAGTC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	49, 112, 245, 306, 317, 338, 497, 570
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	3 cut(s)	354, 414, 444
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	3 cut(s)	20, 62, 247
MspR9I	CCNGG	2 cut(s)	247, 248
Mva1269I	GAATGC	1 cut(s)	15
NciI	CCSGG	2 cut(s)	247, 248
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	2 cut(s)	528, 687
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	466, 522
NmuCI	GTSAC	1 cut(s)	643
PceI	AGGCCT	1 cut(s)	486
PctI	GAATGC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	334, 367, 586
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	175, 178, 600
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PstI	CTGCAG	1 cut(s)	568
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	354, 414, 444
SatI	GCNGC	3 cut(s)	174, 177, 599
Sau3AI	GATC	2 cut(s)	528, 687
SchI	GAGTC	1 cut(s)	513
ScrFI	CCNGG	2 cut(s)	247, 248
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	435, 564
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	147, 511, 617
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	2 cut(s)	176, 578
SspMI	CTAG	3 cut(s)	35, 74, 482
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	245, 246
StyI	CCWWGG	2 cut(s)	462, 681
TaaI	ACNGT	2 cut(s)	56, 302
TaqI	TCGA	1 cut(s)	531
TasI	AATT	3 cut(s)	147, 511, 617
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	334, 367, 586
Tru1I	TTAA	3 cut(s)	354, 414, 444
Tru9I	TTAA	3 cut(s)	354, 414, 444
TscAI	CASTG	3 cut(s)	36, 142, 553
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	2 cut(s)	173, 598
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	4 cut(s)	267, 359, 507, 599
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	3 cut(s)	36, 142, 553
Van91I	CCANNNNNTGG	1 cut(s)	276
XmaI	CCCGGG	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	3 cut(s)	35, 74, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.