Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Reverse (-)

84291948 .. 84294384

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGGAAGAGAAAGTCCAGAGCAAAGCCTGTGAAGAAGCGAGTGGAGAAGCTTGATACTGTTTTCACTTGCCCCTTCTGCAACCATGGCCGAAGCGTCGAGTGCAAAATTCACAAGGAGGAAATGGTTGGCAGTGTCGTGTGCTACGTTTGCAAAGCGAGGTTCGATACTACCATCACGACTCTCAGTGAAGCCATAGACATTTACAGTGAATGGATAGACGAATGCGAGCGGGTTAACAAGCGCCATTATCTACGGCCAACGCCGCACCAACCACAGCCCATCCTCCCCCTCTGCCGGTCCCAGCACTCCACAACACCACGACCCGAGCACCCAGAACGGAGAGATGCCGGGCTCCAAACCAGAAACCAAAGCGCCGCCATCAACCGACCCCTCAAGCCAAAGATCTCGTCGCGGGTGGGCTGTTATGTCATCGCCGATCTGGGTGCTGCGACTATGCGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

156

Amino Acids

17.66

Weight (kDa)

9.6

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Elf1	PF05129	2 - 77	1.1e-29	Transcription elongation factor Elf1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	232
AccII	CGCG	1 cut(s)	415
AciI	CCGC	5 cut(s)	232, 266, 378, 415, 460
AcoI	YGGCCR	2 cut(s)	88, 257
AcsI	RAATTY	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw21I	GWGCWC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	88, 257
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	108
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspLEI	GCGC	2 cut(s)	246, 377
AspS9I	GGNCC	1 cut(s)	300
AsuC2I	CCSGG	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	3 cut(s)	182, 290, 389
BceAI	ACGGC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BcnI	CCSGG	1 cut(s)	352
BfoI	RGCGCY	2 cut(s)	247, 378
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	3 cut(s)	266, 378, 450
BlsI	GCNGC	3 cut(s)	267, 379, 451
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	300
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	2 cut(s)	302, 356
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	415
BshFI	GGCC	2 cut(s)	90, 259
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	298, 351
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	90, 259
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	333, 357
Bsp143I	GATC	2 cut(s)	405, 439
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	5 cut(s)	232, 266, 378, 415, 460
BspANI	GGCC	2 cut(s)	90, 259
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	302, 356
BsrBI	CCGCTC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	2 cut(s)	405, 439
BssT1I	CCWWGG	1 cut(s)	85
Bst4CI	ACNGT	2 cut(s)	61, 209
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	415
BstH2I	RGCGCY	2 cut(s)	247, 378
BstHHI	GCGC	2 cut(s)	246, 377
BstKTI	GATC	2 cut(s)	408, 442
BstMBI	GATC	2 cut(s)	405, 439
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 87, 102, 150, 265
BstSCI	CCNGG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	2 cut(s)	90, 259
BtgI	CCRYGG	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	139, 193, 214
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	2 cut(s)	246, 377
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	300
CseI	GACGC	1 cut(s)	85
CviAII	CATG	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	407, 441
DpnII	GATC	2 cut(s)	405, 439
EaeI	YGGCCR	2 cut(s)	88, 257
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	89
FaiI	YATR	4 cut(s)	87, 197, 429, 458
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	1 cut(s)	85
FauI	CCCGC	3 cut(s)	225, 408, 453
Fnu4HI	GCNGC	3 cut(s)	266, 378, 450
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	3 cut(s)	266, 378, 450
GlaI	GCGC	2 cut(s)	245, 376
GluI	GCNGC	3 cut(s)	266, 378, 450
GsaI	CCCAGC	1 cut(s)	307
HaeII	RGCGCY	2 cut(s)	247, 378
HaeIII	GGCC	2 cut(s)	90, 259
HapII	CCGG	2 cut(s)	298, 351
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	2 cut(s)	246, 377
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	2 cut(s)	244, 375
HinP1I	GCGC	2 cut(s)	244, 375
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	1 cut(s)	181
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	298, 351
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188III	TCNNGA	2 cut(s)	18, 178
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	2 cut(s)	101, 415
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	61, 209
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	81, 105, 153
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 87, 102, 150, 265
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	2 cut(s)	244, 375
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	405, 439
LmnI	GCTCC	1 cut(s)	360
LpnPI	CCDG	8 cut(s)	31, 42, 311, 317, 348, 364, 376, 428
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	337
MaeII	ACGT	1 cut(s)	147
MalI	GATC	2 cut(s)	407, 441
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	2 cut(s)	405, 439
MboII	GAAGA	2 cut(s)	19, 46
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	2 cut(s)	333, 357
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	5 cut(s)	112, 153, 296, 302, 404
MseI	TTAA	1 cut(s)	237
MspI	CCGG	2 cut(s)	298, 351
MspR9I	CCNGG	1 cut(s)	352
Mva1269I	GAATGC	1 cut(s)	230
MvnI	CGCG	1 cut(s)	415
MwoI	GCNNNNNNNGC	5 cut(s)	78, 87, 102, 150, 265
NciI	CCSGG	1 cut(s)	352
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	405, 439
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	302, 356
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	267, 379, 451
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	302, 356
PspPI	GGNCC	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	3 cut(s)	266, 378, 450
Sau3AI	GATC	2 cut(s)	405, 439
Sau96I	GGNCC	1 cut(s)	300
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	2 cut(s)	333, 357
SetI	ASST	3 cut(s)	54, 150, 164
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	5 cut(s)	232, 266, 378, 415, 460
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	61, 209
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	99, 165
TasI	AATT	1 cut(s)	108
TauI	GCSGC	2 cut(s)	268, 380
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	3 cut(s)	139, 193, 214
TseI	GCWGC	1 cut(s)	449
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	3 cut(s)	139, 193, 214
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.