Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002711.1

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Forward (+)

9516 .. 10400

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002711.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atggggaaaaggaagtcaacagcaaagccggctccgaagaagcggatggacaagcttgacaccgtcttcagctgtcccttctgtggccatggctccagtgtcgaatgccgcattgatatgaagaacttgatcggggaagccaattgcagaatatgccaagaaagcttcagcacaactgtcaatgctacagtgaatggattgatgaatgtgaacgggttaaccatctcgaagatgatggtgatgcttaagaagaagtcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

86

Amino Acids

9.45

Weight (kDa)

9.72

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	43, 109
AcoI	YGGCCR	1 cut(s)	85
AcuI	CTGAAG	2 cut(s)	52, 151
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	245
AluBI	AGCT	3 cut(s)	55, 72, 165
AluI	AGCT	3 cut(s)	55, 72, 165
AoxI	GGCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	58
BccI	CCATC	3 cut(s)	40, 229, 230
BfmI	CTRYAG	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	33, 94
BmsI	GCATC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	2 cut(s)	43, 109
BspANI	GGCC	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	33, 94
BspTI	CTTAAG	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	64, 178, 190
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 153, 162
BstSFI	CTRYAG	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	103, 195
Cac8I	GCNNGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	28
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	8 cut(s)	28, 32, 55, 72, 87, 93, 140, 165
CviKI_1	RGCY	8 cut(s)	28, 32, 55, 72, 87, 93, 140, 165
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	52, 151
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	92
FaiI	YATR	3 cut(s)	90, 119, 154
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	109
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	1 cut(s)	92
HincII	GTYRAC	2 cut(s)	18, 219
HindII	GTYRAC	2 cut(s)	18, 219
HindIII	AAGCTT	2 cut(s)	53, 163
HpaI	GTTAAC	1 cut(s)	219
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	18, 211, 219
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	226, 258
Hpy8I	GTNNAC	3 cut(s)	18, 211, 219
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	3 cut(s)	64, 178, 190
HpyCH4V	TGCA	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 153, 162
Hsp92II	CATG	1 cut(s)	92
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	37, 98
LpnPI	CCDG	2 cut(s)	42, 109
LweI	GCATC	1 cut(s)	231
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	4 cut(s)	49, 58, 133, 241
MfeI	CAATTG	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	87
Mox20I	TGGCCA	1 cut(s)	87
MroNI	GCCGGC	1 cut(s)	28
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	2 cut(s)	218, 246
MslI	CAYNNNNRTG	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	72
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	142
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	29, 153, 162
NaeI	GCCGGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	129
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	33, 94
PctI	GAATGC	1 cut(s)	110
PdiI	GCCGGC	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	33, 94
PsyI	GACNNNGTC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	218, 246
SatI	GCNGC	1 cut(s)	109
Sau3AI	GATC	1 cut(s)	129
SetI	ASST	3 cut(s)	57, 74, 167
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	43, 109
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	64, 178, 190
TaqI	TCGA	2 cut(s)	102, 227
TasI	AATT	1 cut(s)	142
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	218, 246
Tru9I	TTAA	2 cut(s)	218, 246
TscAI	CASTG	2 cut(s)	103, 195
TspDTI	ATGAA	2 cut(s)	134, 218
TspRI	CASTG	2 cut(s)	103, 195
Tth111I	GACNNNGTC	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.