Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Reverse (-)

19514410 .. 19514933

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G137800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGGAAGAGAAAGTCGTCGTCGAAGGCAAAGCTTGTAGCTAAGAAACCAAGGGAGAAGCTTGATACAGTATTCTGTTGCCCCTTCTGCAACCACGGGAGCAGCGTCGAATGTGACATTGACATGAAGAACATGATTGGAGAGGCTCTCTGCAGCATTTGCCAAGAGAGCTTCAGCACAACCATCACAGCTTTGACTGAACCCATAGACGTCTACAGTGAATGGATAGACGAATGTGAGCGGGTCAACACCATTGTTTTTGATGATCTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

92

Amino Acids

10.17

Weight (kDa)

4.89

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	213
AccBSI	CCGCTC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	210
AluBI	AGCT	6 cut(s)	34, 41, 61, 171, 191, 272
AluI	AGCT	6 cut(s)	34, 41, 61, 171, 191, 272
ApeKI	GCWGC	2 cut(s)	102, 153
BbvI	GCAGC	2 cut(s)	114, 165
BccI	CCATC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	2 cut(s)	151, 214
BisI	GCNGC	2 cut(s)	103, 154
BlsI	GCNGC	2 cut(s)	104, 155
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	50, 94
BseDI	CCNNGG	2 cut(s)	50, 94
BseXI	GCAGC	2 cut(s)	114, 165
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	50, 94
BssMI	GATC	1 cut(s)	265
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	70, 218
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	42, 273
BstDSI	CCRYGG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 159, 168
BstSFI	CTRYAG	2 cut(s)	151, 214
BstV1I	GCAGC	2 cut(s)	114, 165
BtgI	CCRYGG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	223
CseI	GACGC	1 cut(s)	94
CviAII	CATG	2 cut(s)	124, 133
CviJI	RGCY	7 cut(s)	34, 41, 61, 146, 171, 191, 272
CviKI_1	RGCY	7 cut(s)	34, 41, 61, 146, 171, 191, 272
DdeI	CTNAG	2 cut(s)	42, 273
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	2 cut(s)	127, 136
FaiI	YATR	3 cut(s)	125, 134, 206
FatI	CATG	2 cut(s)	123, 132
FauI	CCCGC	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	103, 154
Fsp4HI	GCNGC	2 cut(s)	103, 154
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	2 cut(s)	103, 154
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	127, 136
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	2 cut(s)	32, 59
Hpy166II	GTNNAC	2 cut(s)	214, 247
Hpy8I	GTNNAC	2 cut(s)	214, 247
Hpy99I	CGWCG	3 cut(s)	22, 25, 110
HpyAV	CCTTC	2 cut(s)	19, 94
HpyCH4III	ACNGT	2 cut(s)	70, 218
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	90, 153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 159, 168
HpyF3I	CTNAG	2 cut(s)	42, 273
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	127, 136
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	2 cut(s)	114, 165
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	267
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	1 cut(s)	265
MboII	GAAGA	2 cut(s)	19, 139
MnlI	CCTC	1 cut(s)	136
MslI	CAYNNNNRTG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	87, 159, 168
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	127, 136
NmuCI	GTSAC	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	104, 155
PstI	CTGCAG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	2 cut(s)	103, 154
Sau3AI	GATC	1 cut(s)	265
SetI	ASST	7 cut(s)	36, 43, 63, 173, 193, 213, 274
SfcI	CTRYAG	2 cut(s)	151, 214
SgeI	CNNG	9 cut(s)	47, 63, 74, 107, 109, 136, 145, 176, 254
SmiMI	CAYNNNNRTG	1 cut(s)	122
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	70, 218
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	2 cut(s)	23, 108
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	102, 153
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	269
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.