Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Reverse (-)

32195762 .. 32197915

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1236500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAAACAAGCCCTTATTTTTTCCCGCAGGAAATAAATATAGCGTGTTTTGTGGAGCAATCGTACGATTCAGCAGTGCGTCGTCTCACTCCCAGAAAGGCCAAGGCTAAGCCTGCAGCTAGGAAGCGAACGGACAAGCTGGATACAGTTTTCTGTTGCCCTTTCTGCAACCATGGGAGCAGTGTTGAGTGCCGCATTGACATGAAAAACTTGATTGGCGAGGCTATCTGTTGCATTTGCCAAGAGAATTTCAGCACAACCGTCACAGCTTTGACCGAACCAATAGACATATACAGCGAATGGATAGACGAATGCGAGAGGGTCAACACTGTTGATGATGATGGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

4.73

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Elf1	PF05129	32 - 106	8.4e-28	Transcription elongation factor Elf1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 193
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	65
AluBI	AGCT	3 cut(s)	119, 139, 269
AluI	AGCT	3 cut(s)	119, 139, 269
Alw26I	GTCTC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	2 cut(s)	117, 193
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	2 cut(s)	118, 194
Bpu1102I	GCTNAGC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	102, 172
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
BseDI	CCNNGG	2 cut(s)	102, 172
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	101
BsiWI	CGTACG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	89
BsmBI	CGTCTC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	101
Bsp1720I	GCTNAGC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	2 cut(s)	26, 193
BspANI	GGCC	1 cut(s)	101
BspMAI	CTGCAG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	102, 172
BssT1I	CCWWGG	2 cut(s)	102, 172
Bst4CI	ACNGT	3 cut(s)	148, 262, 331
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	108, 348
BstDSI	CCRYGG	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 165
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	172
BtsI	GCAGTG	2 cut(s)	81, 187
BtsIMutI	CAGTG	3 cut(s)	81, 187, 327
Cac8I	GCNNGC	1 cut(s)	114
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	173, 202
CviJI	RGCY	8 cut(s)	12, 101, 107, 112, 119, 139, 224, 269
CviKI_1	RGCY	8 cut(s)	12, 101, 107, 112, 119, 139, 224, 269
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	108, 348
Eco130I	CCWWGG	2 cut(s)	102, 172
EcoT14I	CCWWGG	2 cut(s)	102, 172
ErhI	CCWWGG	2 cut(s)	102, 172
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	2 cut(s)	176, 205
FaiI	YATR	5 cut(s)	41, 174, 203, 290, 292
FatI	CATG	2 cut(s)	172, 201
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	117, 193
Fsp4HI	GCNGC	2 cut(s)	117, 193
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	2 cut(s)	117, 193
HaeIII	GGCC	1 cut(s)	101
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	176, 205
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	325
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	84
HpyCH4III	ACNGT	3 cut(s)	148, 262, 331
HpyCH4V	TGCA	3 cut(s)	116, 168, 234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 165
HpyF3I	CTNAG	2 cut(s)	108, 348
Hsp92II	CATG	2 cut(s)	176, 205
LmnI	GCTCC	2 cut(s)	55, 177
LpnPI	CCDG	4 cut(s)	14, 106, 125, 126
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	262
MluCI	AATT	1 cut(s)	247
MnlI	CCTC	2 cut(s)	214, 312
MslI	CAYNNNNRTG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	317
MwoI	GCNNNNNNNGC	2 cut(s)	113, 165
NcoI	CCATGG	1 cut(s)	172
NlaIII	CATG	2 cut(s)	176, 205
NmuCI	GTSAC	1 cut(s)	262
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	68
Pfl23II	CGTACG	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	118, 194
PspLI	CGTACG	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	200
SatI	GCNGC	2 cut(s)	117, 193
SetI	ASST	3 cut(s)	121, 141, 271
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	26, 193
SspMI	CTAG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	102, 172
TaaI	ACNGT	3 cut(s)	148, 262, 331
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	1 cut(s)	247
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	3 cut(s)	81, 187, 334
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	3 cut(s)	81, 187, 334
XapI	RAATTY	1 cut(s)	247
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.