Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Reverse (-)

63373812 .. 63376103

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0460300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCCAAGGCTGAGAAGGTTGGTGGGGATTCGAGGGGGTGCTTAGCCTACATTACCGTAGTAATCTGGGAGCACATGGCTGTCAAAACGATTTCGTCAAGTCCATCTATTACTTTCTATTTTGATATTCATGGAGATATGCACAATGATTGGTCAAAGATTACATACACTGGTCATGTCCCAATCAAGGTATCTACAATCGCAACCAAGGTGTCTTTAACAGTGGAAGCACATGATGCAGTTCATGGAGGTACATGTCATGAACAATGTAGGTCTACTTCCATTGGTTCTAAGTCCCTTAAGGAGGAGAATACACTTTGTAAGCCTTGGGCCGGAAACGAGGTGTTGCTAGATGAAAAATTTAAGAAGACCTTAGAAGACATCATCAGCTCTTCGATGCGAAGCATTGTATCTAAACAAGTTGGGCCATCTAAGCAGGCTTTCTACTCTGCCTCATTTGATGGAGATGGAATCGTAAAACAAAATGATAAGTCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

166

Amino Acids

18.18

Weight (kDa)

7.04

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	187, 304, 332
AflII	CTTAAG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	254
AluBI	AGCT	1 cut(s)	390
AluI	AGCT	1 cut(s)	390
Alw21I	GWGCWC	1 cut(s)	75
AoxI	GGCC	2 cut(s)	330, 425
ApoI	RAATTY	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	330, 425
BarI	GAAGNNNNNNTAC	2 cut(s)	262, 294
BbsI	GAAGAC	2 cut(s)	374, 384
Bbv12I	GWGCWC	1 cut(s)	75
BccI	CCATC	4 cut(s)	112, 436, 455, 461
BfaI	CTAG	1 cut(s)	350
BfrI	CTTAAG	1 cut(s)	299
BlpI	GCTNAGC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	330, 425
BmsI	GCATC	2 cut(s)	226, 387
BpiI	GAAGAC	2 cut(s)	374, 384
Bpu1102I	GCTNAGC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	6, 207, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 304, 332
Bse1I	ACTGG	1 cut(s)	175
BseDI	CCNNGG	3 cut(s)	6, 207, 326
BseLI	CCNNNNNNNGG	3 cut(s)	187, 304, 332
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	332, 427
BsiHKAI	GWGCWC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	164, 280
BslI	CCNNNNNNNGG	3 cut(s)	187, 304, 332
BsmFI	GGGAC	2 cut(s)	164, 280
BsnI	GGCC	2 cut(s)	332, 427
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp1720I	GCTNAGC	1 cut(s)	43
BspANI	GGCC	2 cut(s)	332, 427
BspCNI	CTCAG	1 cut(s)	4
BspHI	TCATGA	1 cut(s)	259
BspQI	GCTCTTC	1 cut(s)	397
BspTI	CTTAAG	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	6, 207, 326
BssT1I	CCWWGG	3 cut(s)	6, 207, 326
Bst4CI	ACNGT	2 cut(s)	58, 223
Bst6I	CTCTTC	1 cut(s)	397
BstAFI	CTTAAG	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	5 cut(s)	12, 43, 291, 373, 432
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 433
BstNSI	RCATGY	1 cut(s)	258
BstV2I	GAAGAC	2 cut(s)	374, 384
BsuRI	GGCC	2 cut(s)	332, 427
BtsIMutI	CAGTG	2 cut(s)	168, 228
Cac8I	GCNNGC	1 cut(s)	438
CciI	TCATGA	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	330, 425
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	7 cut(s)	76, 131, 176, 233, 245, 255, 260
CviJI	RGCY	8 cut(s)	11, 47, 80, 325, 332, 390, 427, 440
CviKI_1	RGCY	8 cut(s)	11, 47, 80, 325, 332, 390, 427, 440
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	5 cut(s)	12, 43, 291, 373, 432
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Eco130I	CCWWGG	3 cut(s)	6, 207, 326
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoT14I	CCWWGG	3 cut(s)	6, 207, 326
ErhI	CCWWGG	3 cut(s)	6, 207, 326
FaeI	CATG	7 cut(s)	79, 134, 179, 236, 248, 258, 263
FaiI	YATR	9 cut(s)	77, 132, 140, 166, 177, 234, 246, 256, 261
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	2 cut(s)	164, 280
FatI	CATG	7 cut(s)	75, 130, 175, 232, 244, 254, 259
FblI	GTMKAC	1 cut(s)	275
FspBI	CTAG	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	332, 427
HapII	CCGG	1 cut(s)	333
Hin1II	CATG	7 cut(s)	79, 134, 179, 236, 248, 258, 263
HinfI	GANTC	2 cut(s)	29, 471
HpaII	CCGG	1 cut(s)	333
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	58, 223
HpyCH4V	TGCA	2 cut(s)	142, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 433
HpyF3I	CTNAG	5 cut(s)	12, 43, 291, 373, 432
Hsp92II	CATG	7 cut(s)	79, 134, 179, 236, 248, 258, 263
LguI	GCTCTTC	1 cut(s)	397
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	4 cut(s)	52, 156, 346, 422
LweI	GCATC	2 cut(s)	226, 387
MaeI	CTAG	1 cut(s)	350
MboII	GAAGA	3 cut(s)	379, 384, 389
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	359, 495
MnlI	CCTC	5 cut(s)	27, 242, 298, 334, 463
MseI	TTAA	3 cut(s)	218, 300, 363
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	236, 433
NlaIII	CATG	7 cut(s)	79, 134, 179, 236, 248, 258, 263
NspI	RCATGY	1 cut(s)	258
PagI	TCATGA	1 cut(s)	259
PciI	ACATGT	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	29, 471
PscI	ACATGT	1 cut(s)	254
PspPI	GGNCC	2 cut(s)	330, 425
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	397
SaqAI	TTAA	3 cut(s)	218, 300, 363
Sau96I	GGNCC	2 cut(s)	330, 425
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	8 cut(s)	21, 192, 213, 253, 275, 345, 374, 392
SfaNI	GCATC	2 cut(s)	226, 387
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	359, 495
SspMI	CTAG	1 cut(s)	350
StyI	CCWWGG	3 cut(s)	6, 207, 326
TaaI	ACNGT	2 cut(s)	58, 223
TaqI	TCGA	2 cut(s)	32, 395
TasI	AATT	2 cut(s)	359, 495
TfiI	GAWTC	2 cut(s)	29, 471
Tru1I	TTAA	3 cut(s)	218, 300, 363
Tru9I	TTAA	3 cut(s)	218, 300, 363
TscAI	CASTG	2 cut(s)	175, 228
TspDTI	ATGAA	4 cut(s)	119, 233, 276, 369
TspRI	CASTG	2 cut(s)	175, 228
Vha464I	CTTAAG	1 cut(s)	299
XagI	CCTNNNNNAGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	275
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.