Rh5BG223200

Transcription elongation factor 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
25859964 .. 25862787
2824 bp
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UTR
Exon/CDS
Intron
Rh5BG223200.1

Sequence Viewer

Length: 249 bp
ATGGGCAAGCGAAAGGCGAAGGCAAAGCCTGCGCCTAAGAAGAGAATGGACAAGCTGGATACTGTTTTCACTTGCCCCTTTTGCAACCATGGTGACAGCGTCGAGTGCCGCATTGACATGAAGAACTTGATTGGTGAAGCTATATGTAACATCTGTCAAGAGAGTTTCAGCACAACCATCACAGGTATGTTAGACATATTATTTTGGAATGCAAGTGATGTTGAAACAGAGTGCTTGGGTTCATGTTAA

Protein Analysis

82

Amino Acids

9.11

Weight (kDa)

6.53

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Elf1 PF05129 2 - 62 6.3e-21 Transcription elongation factor Elf1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 2 cut(s) 55, 140
AluI AGCT 2 cut(s) 55, 140
AspLEI GCGC 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 104, 146
BccI CCATC 1 cut(s) 185
BciVI GTATCC 1 cut(s) 52
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 88
BsmI GAATGC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 8, 30
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 29, 81, 105
BsuI GTATCC 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 8, 30
CfoI GCGC 1 cut(s) 34
CseI GACGC 1 cut(s) 88
CviAII CATG 3 cut(s) 89, 118, 243
CviJI RGCY 3 cut(s) 28, 55, 140
CviKI_1 RGCY 3 cut(s) 28, 55, 140
DdeI CTNAG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 3 cut(s) 92, 121, 246
FaiI YATR 7 cut(s) 90, 119, 143, 145, 188, 197, 244
FatI CATG 3 cut(s) 88, 117, 242
Fnu4HI GCNGC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 109
GlaI GCGC 1 cut(s) 33
GluI GCNGC 1 cut(s) 109
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 34
Hin1II CATG 3 cut(s) 92, 121, 246
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HphI GGTGA 2 cut(s) 104, 146
Hpy188III TCNNGA 1 cut(s) 158
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 84, 212
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 81, 105
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 3 cut(s) 92, 121, 246
HspAI GCGC 1 cut(s) 32
LpnPI CCDG 3 cut(s) 41, 42, 168
MaeIII GTNAC 2 cut(s) 92, 146
MboII GAAGA 2 cut(s) 52, 133
MseI TTAA 1 cut(s) 247
MslI CAYNNNNRTG 2 cut(s) 116, 185
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 29, 81, 105
NcoI CCATGG 1 cut(s) 88
NlaIII CATG 3 cut(s) 92, 121, 246
NmuCI GTSAC 1 cut(s) 92
PctI GAATGC 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 110
PsyI GACNNNGTC 1 cut(s) 98
RseI CAYNNNNRTG 2 cut(s) 116, 185
SaqAI TTAA 1 cut(s) 247
SatI GCNGC 1 cut(s) 109
SetI ASST 3 cut(s) 57, 142, 187
SmiMI CAYNNNNRTG 2 cut(s) 116, 185
SsiI CCGC 1 cut(s) 109
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 102
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 134, 231
Tth111I GACNNNGTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.