Rroxscaffold_5G00386200

Transcription elongation factor 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
65154738 .. 65154995
258 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00386200.1

Sequence Viewer

Length: 258 bp
ATGGGTAAGAGAAAGTCGAGAGCAAAGCCAGTTGCGAACAAGAAGCGAGTTCAGAAGCTTGATACTGTTTACACCTGCCCCTTCTGCAGCCACGGACAAAGCGTTGAGTGCGAAATCGACACGAAGGTAATGGAGGGCCGGGTCAGGTGCTTCATTTGCAAAGAGAGTTACGCTACGAAAATCACATCTTTGACTGAAGCCATAGACATCTACAGCGAATGGATAGATGAATGCATAAGGGTCAACCAGAGCGACTAA

Protein Analysis

85

Amino Acids

9.77

Weight (kDa)

8.56

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Elf1 PF05129 2 - 78 2.5e-28 Transcription elongation factor Elf1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 216
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 140
BbvI GCAGC 1 cut(s) 99
BcnI CCSGG 1 cut(s) 140
BfmI CTRYAG 2 cut(s) 85, 211
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 139
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 1 cut(s) 138
BspANI GGCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 91
BstMWI GCNNNNNNNGC 3 cut(s) 84, 108, 156
BstSCI CCNGG 1 cut(s) 138
BstSFI CTRYAG 2 cut(s) 85, 211
BstV1I GCAGC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 136
CviJI RGCY 5 cut(s) 28, 58, 90, 138, 200
CviKI_1 RGCY 5 cut(s) 28, 58, 90, 138, 200
Eco57I CTGAAG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 236
FaiI YATR 2 cut(s) 203, 236
Fnu4HI GCNGC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 88
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 56
HpaII CCGG 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 70, 244
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 2 cut(s) 70, 244
HpyAV CCTTC 2 cut(s) 91, 118
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 87, 159, 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 108, 156
LpnPI CCDG 4 cut(s) 42, 88, 130, 152
Lsp1109I GCAGC 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 167
MnlI CCTC 1 cut(s) 127
Mph1103I ATGCAT 1 cut(s) 236
MspI CCGG 1 cut(s) 139
MspR9I CCNGG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 84, 108, 156
NciI CCSGG 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 236
PaqCI CACCTGC 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 89
SatI GCNGC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 140
SetI ASST 4 cut(s) 60, 77, 129, 149
SfcI CTRYAG 2 cut(s) 85, 211
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 17, 117
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 142, 243
TspGWI ACGGA 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.