Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Forward (+)

18670051 .. 18671461

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGAAAGAGGAAATCAAGAGCAAAGCCTGCTCCTACGAAGCGAATGGATAAGCTTGACACAATCTTTAGTTGTCCTTTCTGCAATCACGGGTCTAGTGTCGAATGCATCATTGATATGAAGCATCTGATTGGTAAAGCAGCTTGTAGAATCTGTGAAGAAAGCTTTAGTACTACTATCACAGCTTTGACTGAAGCTATAGACATTTATAGCGAATGGATCGATGAGTGCGAGAGGGTTAATACCGCGGAAGATGATGTTGTGCAAGAAGAGGAAGAAGAAGTAGAAGAGGAAGAAGAAGAGGAAGAAGAGGAGGATGATGAAGATGACCATGTCTCTGTCAAAAGGAAGTATAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

120

Amino Acids

13.89

Weight (kDa)

4.36

Isoelectric Point (pI)

81.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Elf1	PF05129	2 - 78	2.4e-30	Transcription elongation factor Elf1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AciI	CCGC	2 cut(s)	246, 248
AclWI	GGATC	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	172
AluBI	AGCT	5 cut(s)	55, 143, 165, 185, 197
AluI	AGCT	5 cut(s)	55, 143, 165, 185, 197
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
BmcAI	AGTACT	1 cut(s)	172
BmsI	GCATC	2 cut(s)	117, 133
Bsa29I	ATCGAT	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	2 cut(s)	246, 248
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	248
BspPI	GGATC	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	219
Bst6I	CTCTTC	4 cut(s)	264, 282, 294, 303
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	30
Cfr42I	CCGCGG	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	6 cut(s)	28, 55, 143, 165, 185, 197
CviKI_1	RGCY	6 cut(s)	28, 55, 143, 165, 185, 197
CviQI	GTAC	1 cut(s)	171
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
Eam1104I	CTCTTC	4 cut(s)	264, 282, 294, 303
EarI	CTCTTC	4 cut(s)	264, 282, 294, 303
Eco57I	CTGAAG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	110
FaeI	CATG	1 cut(s)	335
FaiI	YATR	5 cut(s)	119, 200, 210, 333, 354
FalI	AAGNNNNNCTT	1 cut(s)	341
FatI	CATG	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	335
HindIII	AAGCTT	2 cut(s)	53, 163
HinfI	GANTC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	129, 362
Hpy188III	TCNNGA	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	84, 108, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	335
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	1 cut(s)	42
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	2 cut(s)	117, 133
MaeI	CTAG	1 cut(s)	96
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MnlI	CCTC	7 cut(s)	3, 228, 265, 283, 295, 304, 307
Mph1103I	ATGCAT	1 cut(s)	110
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	248
Mva1269I	GAATGC	1 cut(s)	110
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	1 cut(s)	335
NsiI	ATGCAT	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	142
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	1 cut(s)	116
SacII	CCGCGG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	219
ScaI	AGTACT	1 cut(s)	172
SetI	ASST	5 cut(s)	57, 145, 167, 187, 199
SfaNI	GCATC	2 cut(s)	117, 133
SfcI	CTRYAG	1 cut(s)	198
Sfr303I	CCGCGG	1 cut(s)	249
SgrBI	CCGCGG	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	116
SsiI	CCGC	2 cut(s)	246, 248
SspMI	CTAG	1 cut(s)	96
TaqI	TCGA	2 cut(s)	102, 222
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	134, 336
Tth111I	GACNNNGTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	96
ZrmI	AGTACT	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.