Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Reverse (-)

36399609 .. 36399977

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGGAAGAGAAAGTCGAGGAGTAAGCCAGTGAAGAGAAGAGTGGAGAAGCTTGAGACTGTTTTCAGTTGCCCTTTCTGCAACTATGGCCGAAACGTCCAGTGCAGAATTTACAAGGTGAAGCTGGCATCGGGAGGGGAGAAATGGATTGGCACTGCCGACTGCTATATCTGCCATGAGGTCTTTCATACTCCAGCCACGGCTCTCACTGAACCCATTGACATTTACAGTGAATGGATCGACGAATGCGAGAGGGTCAACAATGAATTACTAGACAAATGCGAGCCGGCCAACAAGCGCAATCGATGTGAGGTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

107

Amino Acids

12.36

Weight (kDa)

8.63

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Elf1	PF05129	2 - 84	4.3e-25	Transcription elongation factor Elf1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	2 cut(s)	88, 288
AcsI	RAATTY	1 cut(s)	108
AluBI	AGCT	2 cut(s)	52, 124
AluI	AGCT	2 cut(s)	52, 124
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	88, 288
ApoI	RAATTY	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	29, 100
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	29, 100
BseRI	GAGGAG	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	90, 290
BshVI	ATCGAT	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	90, 290
Bsp143I	GATC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	90, 290
BspDI	ATCGAT	1 cut(s)	304
BspPI	GGATC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	29, 100
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	61, 230
Bst6I	CTCTTC	3 cut(s)	2, 29, 34
BstC8I	GCNNGC	3 cut(s)	126, 284, 288
BstDSI	CCRYGG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 87, 171
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	90, 290
BsuTUI	ATCGAT	1 cut(s)	304
BtgI	CCRYGG	1 cut(s)	198
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	5 cut(s)	36, 107, 153, 207, 235
Cac8I	GCNNGC	3 cut(s)	126, 284, 288
CfoI	GCGC	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	286
ClaI	ATCGAT	1 cut(s)	304
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	8 cut(s)	28, 52, 90, 124, 197, 203, 286, 290
CviKI_1	RGCY	8 cut(s)	28, 52, 90, 124, 197, 203, 286, 290
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
EaeI	YGGCCR	2 cut(s)	88, 288
Eam1104I	CTCTTC	3 cut(s)	2, 29, 34
EarI	CTCTTC	3 cut(s)	2, 29, 34
FaeI	CATG	1 cut(s)	179
FaiI	YATR	4 cut(s)	87, 168, 177, 189
FatI	CATG	1 cut(s)	175
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	90, 290
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	50
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	61, 230
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	81, 105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 87, 171
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	298
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	5 cut(s)	42, 110, 113, 207, 300
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	96
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	3 cut(s)	19, 46, 51
MluCI	AATT	2 cut(s)	108, 266
MnlI	CCTC	5 cut(s)	12, 128, 172, 246, 304
MroNI	GCCGGC	1 cut(s)	286
MspI	CCGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	251
MwoI	GCNNNNNNNGC	3 cut(s)	78, 87, 171
NaeI	GCCGGC	1 cut(s)	288
NdeII	GATC	1 cut(s)	237
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	251
PdiI	GCCGGC	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	237
SetI	ASST	6 cut(s)	54, 99, 120, 126, 183, 315
SfaNI	GCATC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	108, 266
SspMI	CTAG	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	61, 230
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	3 cut(s)	17, 240, 304
TasI	AATT	2 cut(s)	108, 266
TscAI	CASTG	5 cut(s)	36, 107, 160, 214, 235
TspDTI	ATGAA	2 cut(s)	176, 279
TspRI	CASTG	5 cut(s)	36, 107, 160, 214, 235
XapI	RAATTY	1 cut(s)	108
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.