Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Forward (+)

40688597 .. 40688866

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1271300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGGAAGAGAAAGTCTACGGCAACAAAACCAGCAGCCAGGAAGCGATTTGCCGAGAAGCTTGCTACTGTTTTCTGTTGCCCCTTCTGCAACCATTCCAGCAGTGTTGAGTGCCGAATCGACATGAAGAACATGATTGGTGAGGCTATCTGTTGCGTTTGCCTAGAGAGTTTCAGCACAACTGTCACAGCTTTGACTGAACCGATCGACATTTACAGTGAATGGATTGATGAATGCGAGAAGGTCAACAGAACCCTTAACGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

90

Amino Acids

10.02

Weight (kDa)

5.84

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Elf1	PF05129	2 - 81	1.4e-28	Transcription elongation factor Elf1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	61, 191
AluI	AGCT	2 cut(s)	61, 191
ApeKI	GCWGC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	36
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	207
BsiEI	CGRYCG	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	204
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	3 cut(s)	70, 184, 218
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	109, 223
Cac8I	GCNNGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	124, 133
CviJI	RGCY	4 cut(s)	38, 61, 146, 191
CviKI_1	RGCY	4 cut(s)	38, 61, 146, 191
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
EcoRII	CCWGG	1 cut(s)	38
FaeI	CATG	2 cut(s)	127, 136
FaiI	YATR	2 cut(s)	125, 134
FatI	CATG	2 cut(s)	123, 132
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	127, 136
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	117
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	18, 247
Hpy8I	GTNNAC	2 cut(s)	18, 247
HpyAV	CCTTC	2 cut(s)	94, 235
HpyCH4III	ACNGT	3 cut(s)	70, 184, 218
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	127, 136
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	4 cut(s)	25, 45, 52, 112
Lsp1109I	GCAGC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	2 cut(s)	19, 139
MnlI	CCTC	1 cut(s)	136
MseI	TTAA	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	127, 136
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	37
Ple19I	CGATCG	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PvuI	CGATCG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	204
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	3 cut(s)	63, 193, 246
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	3 cut(s)	70, 184, 218
TaqI	TCGA	2 cut(s)	120, 207
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	109, 223
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	140, 246
TspRI	CASTG	2 cut(s)	109, 223
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.