Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Reverse (-)

66130580 .. 66130915

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGTAAGAGAAAGTCGAGAGCAAAGCCAGTTGCGAACAAGAAGCGAGTTCAGAAGCTTGACACTGTTTACACCTGCCCCTTCTGCAGCCACGGACAAAGCGTTGAGTGCGAAATCGACACGAAGGTAATGGAGGGCCGGGTCAGGTGCTTCATTTGCAAGGAGAGTTACGCTACGAAAATCACAACTTTGACTGAAGCCATAGACATCTACAGCGAATGGATAGATGAATGCATAAGAGTCAACCAGAGCGACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

86

Amino Acids

9.87

Weight (kDa)

8.56

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Elf1	PF05129	2 - 78	3.9e-28	Transcription elongation factor Elf1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	140
BfmI	CTRYAG	2 cut(s)	85, 211
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	99
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	89
BspMI	ACCTGC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 108, 156
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	2 cut(s)	85, 211
BstV1I	GCAGC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	136
CviJI	RGCY	5 cut(s)	28, 58, 90, 138, 200
CviKI_1	RGCY	5 cut(s)	28, 58, 90, 138, 200
Eco57I	CTGAAG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	236
FaiI	YATR	3 cut(s)	203, 236, 259
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	2 cut(s)	240, 254
HpaII	CCGG	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	70, 244
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	2 cut(s)	70, 244
HpyAV	CCTTC	2 cut(s)	91, 118
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	87, 159, 234
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 108, 156
LpnPI	CCDG	4 cut(s)	42, 88, 130, 152
Lsp1109I	GCAGC	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	248, 249
MnlI	CCTC	1 cut(s)	127
Mph1103I	ATGCAT	1 cut(s)	236
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	84, 108, 156
NciI	CCSGG	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	236
PaqCI	CACCTGC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	248, 248
PpsI	GAGTC	2 cut(s)	248, 248
PspPI	GGNCC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	89
SatI	GCNGC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	248, 249
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	4 cut(s)	60, 77, 129, 149
SfcI	CTRYAG	2 cut(s)	85, 211
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	17, 117
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	87
TspDTI	ATGAA	2 cut(s)	142, 243
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.