Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Forward (+)

29190516 .. 29191499

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTTTAATATTTCAAATGGGATTATGCTTTGCCCTTGTACAATGCTGAGATGCTTGGTTGTGAATCCCAAATTCGTCTTGTTGTATTCAGAACAAAAGTTATTCGCTATTCGGGAACATTCTTCAATGGGGAAAAGGAAGTCATCAGCAAAACCGCCTCCTAAGAAGCGGAATGACAAGCTTGATACCGTCTTCAGCTGTCCCTTCTGCAGCCATGGCACCAGTGTTGAATGCCGCATTGACATGAAGAACTTGATTGGGGAAGCTTCTTGTAGAATATGCCAAGAAAGCTTCAGCACCACCATCACAGCTTTATCCGAACCAATAGACGTCTACAGCGAATGGATTGATGAATGCGAGCGGGTTAACAATGTCGAAGATGATGGTGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

5.69

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	4 cut(s)	155, 169, 235, 361
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	2 cut(s)	178, 277
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	15, 126, 230
AluBI	AGCT	5 cut(s)	181, 198, 266, 291, 311
AluI	AGCT	5 cut(s)	181, 198, 266, 291, 311
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	71
BanI	GGYRCC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	2 cut(s)	311, 377
BfmI	CTRYAG	2 cut(s)	208, 334
BisI	GCNGC	2 cut(s)	211, 235
BlsI	GCNGC	2 cut(s)	212, 236
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	2 cut(s)	41, 379
BpiI	GAAGAC	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	2 cut(s)	236, 359
Bsp1407I	TGTACA	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	214
BspACI	CCGC	4 cut(s)	155, 169, 235, 361
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	361
BsrGI	TGTACA	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	47, 162, 393
BstDSI	CCRYGG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 288
BstSFI	CTRYAG	2 cut(s)	208, 334
BstV1I	GCAGC	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	2 cut(s)	215, 244
CviJI	RGCY	6 cut(s)	181, 198, 213, 266, 291, 311
CviKI_1	RGCY	6 cut(s)	181, 198, 213, 266, 291, 311
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	3 cut(s)	47, 162, 393
Eco130I	CCWWGG	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	178, 277
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	2 cut(s)	218, 247
FaiI	YATR	4 cut(s)	26, 216, 245, 280
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	2 cut(s)	214, 243
FauI	CCCGC	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	2 cut(s)	211, 235
Fsp4HI	GCNGC	2 cut(s)	211, 235
GluI	GCNGC	2 cut(s)	211, 235
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	218, 247
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	3 cut(s)	179, 264, 289
HinfI	GANTC	1 cut(s)	64
HpaI	GTTAAC	1 cut(s)	367
Hpy166II	GTNNAC	2 cut(s)	334, 367
Hpy188I	TCNGA	2 cut(s)	91, 319
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	2 cut(s)	334, 367
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 288
HpyF3I	CTNAG	3 cut(s)	47, 162, 393
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	218, 247
KspAI	GTTAAC	1 cut(s)	367
LpnPI	CCDG	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	2 cut(s)	41, 379
MaeII	ACGT	1 cut(s)	330
MbiI	CCGCTC	1 cut(s)	361
MboII	GAAGA	4 cut(s)	114, 184, 259, 389
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	6, 366
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	198
Mva1269I	GAATGC	2 cut(s)	236, 359
MwoI	GCNNNNNNNGC	2 cut(s)	216, 288
NcoI	CCATGG	1 cut(s)	214
NlaIII	CATG	2 cut(s)	218, 247
NlaIV	GGNNCC	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PctI	GAATGC	2 cut(s)	236, 359
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	2 cut(s)	212, 236
PspN4I	GGNNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	198
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	6, 366
SatI	GCNGC	2 cut(s)	211, 235
SetI	ASST	6 cut(s)	183, 200, 268, 293, 313, 333
SfaNI	GCATC	2 cut(s)	41, 379
SfcI	CTRYAG	2 cut(s)	208, 334
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	71
SsiI	CCGC	4 cut(s)	155, 169, 235, 361
SspI	AATATT	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	375
TasI	AATT	1 cut(s)	71
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	6, 366
Tru9I	TTAA	2 cut(s)	6, 366
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	2 cut(s)	260, 366
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	333
ZraI	GACGTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.