Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001003

Physical Location & Seq

Genomic Coordinates Forward (+)

2429773 .. 2430072

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1020300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGAAAGAGGAAGTCATTAGCAAAACCGCCTCCTAAGAATCGGAATGACAAGCTTGATACCGTCTTCAACTGTCCATTTTGCAGCCATGGCACTAGTGTTGAATGCCGCATTGACATGAAGAACTTGAATGGGAAAGCTCCTTGTAGAATATGCCAAGAAAGCTTCAGCACCACCATCACAGCTTTATCTGAACCAATAGACGTCTACAGCGAATGGATTGATGAAAGCGAAGCAGGTGCAGTCACAGCACCAAGCCAAATATTCCAAATATCACAAACACTGATCTTGAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006338 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040029 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045815 GO:0045893 GO:0045935 GO:0046483 GO:0048096 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Elf1

Protein Analysis

100

Amino Acids

10.98

Weight (kDa)

7.6

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Elf1	PF05129	2 - 78	5.2e-30	Transcription elongation factor Elf1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46030 AT5G46030 AT5G46030
fragaria_vesca	FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g08380 FvH4_3g19110 FvH4_3g43700
malus_domestica	MD03G1236500.v1.1 MD05G1271300.v1.1 MD05G1308200.v1.1 MD06G1020300.v1.1 MD10G1287200.v1.1 MD11G1257300.v1.1
prunus_persica	Prupe.2G137500_v2.0.a1 Prupe.2G137800_v2.0.a1 Prupe.2G141500_v2.0.a1 Prupe.2G141600_v2.0.a1 Prupe.4G054600_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1 Prupe.4G172800_v2.0.a1
pyrus_communis	pycom05g28490
rosa_chinensis	RchiOBHm_Chr4g0445711 RchiOBHm_Chr5g0009521 RchiOBHm_Chr5g0031911 RchiOBHm_Chr5g0078351
rosa_laevigata	RLG00000036769
rosa_multiflora	Rmu_sc0000335.1_g000042 Rmu_sc0001124.1_g000026 Rmu_sc0002711.1_g000002 Rmu_sc0005375.1_g000025
rosa_roxburghii	Rroxscaffold_1G00048350 Rroxscaffold_1G00066610 Rroxscaffold_1G00067310 Rroxscaffold_5G00386200
rosa_rugosa	Rorug04G0365100 Rorug04G0444100 Rorug05G0129100 Rorug05G0460300
rosa_samantha	Rh4AG426000 Rh4CG453000 Rh4DG434200 Rh5AG074900 Rh5AG075500 Rh5AG223100 Rh5AG514200 Rh5BG070700 Rh5BG223200 Rh5BG537100 Rh5CG083400 Rh5CG246400 Rh5CG560600 Rh5DG071100 Rh5DG228100
rosa_wichuraiana	Rw5G006940 Rw5G006960 Rw5G020320 Rw5G047740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
AatII	GACGTC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	2 cut(s)	29, 109
AcuI	CTGAAG	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	204
AgsI	TTSAA	4 cut(s)	70, 104, 130, 292
AhlI	ACTAGT	1 cut(s)	95
AluBI	AGCT	4 cut(s)	55, 140, 165, 185
AluI	AGCT	4 cut(s)	55, 140, 165, 185
ApeKI	GCWGC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	85, 109
BlsI	GCNGC	2 cut(s)	86, 110
BpiI	GAAGAC	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	96
BsgI	GTGCAG	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	2 cut(s)	29, 109
BspMI	ACCTGC	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	285
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	64, 74
BstACI	GRCGYC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 162, 248
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	58
BtgI	CCRYGG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	281
BveI	ACCTGC	1 cut(s)	227
CviAII	CATG	2 cut(s)	89, 118
CviJI	RGCY	6 cut(s)	55, 87, 140, 165, 185, 258
CviKI_1	RGCY	6 cut(s)	55, 87, 140, 165, 185, 258
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	92, 121
FaiI	YATR	3 cut(s)	90, 119, 154
FatI	CATG	2 cut(s)	88, 117
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	85, 109
Fsp4HI	GCNGC	2 cut(s)	85, 109
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	2 cut(s)	85, 109
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	92, 121
HindIII	AAGCTT	2 cut(s)	53, 163
HinfI	GANTC	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	45, 193
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	64, 74
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	84, 242
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 162, 248
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	92, 121
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	1 cut(s)	222
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	2 cut(s)	58, 133
MnlI	CCTC	2 cut(s)	3, 42
MslI	CAYNNNNRTG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	90, 162, 248
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	2 cut(s)	92, 121
NmuCI	GTSAC	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	86, 110
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	2 cut(s)	85, 109
Sau3AI	GATC	1 cut(s)	285
SetI	ASST	6 cut(s)	57, 142, 167, 187, 207, 241
SfcI	CTRYAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	29, 109
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	64, 74
TaiI	ACGT	1 cut(s)	207
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	40
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	134, 240
TspRI	CASTG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	96
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.