Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010401

Physical Location & Seq

Genomic Coordinates Reverse (-)

88653057 .. 88657972

Gene Structure 4916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGTTCACGCCGAGCAATAGAGAGAGAGAGAGAGATCACAATGCGCAGAGAGTGTTTTGGAAAATCGACGAAATTGCTCAAAGCTTCACCAATGGCGTCCGTCCACTCTCTCTTCCTCCATCCTCCTCTCGTCGCCATCACACGACCCAGTCGCTGCTCTCTCTACTCCAAACCCCGAAATCCCCGTTTTACCCTCGCCTGCTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTCGGAAATCGGCTCCGGCCACCGAGCAGGAGGTCCTCCAGGCGATTTCCGAGTCCTCCGAGAAGAGCCTGCCGTGCGTGAGGACGTACGAGAACGAATTGGCGCGGCTGGGACTAGTCGGAGCCGTGGATTTTCAGCAGGCTCTGACGGCGGCCGCCGCCGACGGAGGAGAGGCCGCCGACGAGCACATTAGGGAGGGCGTGCCCGCTATGGTTGTGGAGACTTTGTTCCCGGGTAACTCCGACCCGTACAGTACAATCTCGACCCGGCTGTTTCTTCCTGCTAGAAAAGTTAAAGAAAAAGCTGGTAAATTGAGAAGCTCCATCACTGAAGATATGCTGTCAAGCACTACTTCTAGAAACATACTTTCTATGACATTTAGACAAGTAGTGTTAGAACTGCTCTGGAGCTTTCAGCTAGTTGTTTTCAGACCTGGAACTCAAAGGAATATGAACGATCTTGAGAACCCCAGAGAGGTCCCTGCATGTGTCACCCTTAGTTCATCAGACGAACGGATTTTATCTGTGCTCGCAGAAGTTGTCTGCATCTCTGCTCTTCAAAATACAGAAAAACAATTTCTTGAAGATTACACGGGCAAAACACCGAGTAATTTTCTTCATTGGTTTCGAAAGCCTAGAAGGACTGTATCAAAAGATTCCTCAGTTGTCATATACAAATTATTTGAAGATGAGATAGTTGAAAATGCCAAGAGTCTGCTCGAACATTTTCATTCCACGAAGAACAGTTTTAAGTCTGTAAAAGCAAAATCAAAGTGGTGGACACCATCTGCACTCTCTAAACTGGAAAAGATTGGTGGTCCGGAATTTAGTTCTTGGACTAGTGAGTATGTTCCAGCTTACAAGCTACAAATTGATGCTAATCGGCTTAAGGATGTGAAATTTGAAGGCTGGAGAAAATGTGGAGAAAATAGTTGGGAAGTTCTTTTGACACACTCCCAGATGGTTGGATTGGCTGATATAATAGATATGTACTATGAAGATCTTTACACCCTGCCTGATAAAGAACTATCTTGTGGTGTTATTGCAAGTTCCACCAACTTATCTAATAAAAAGACGGGCTCGTTCTTATTAAAATTGCTATCTGTCTCCCTTTCAAGTGGAATTCTTCTCGTTGCAATCAGTGCTCTTGGTCAATTTGGTTTACCTTATCTACATAAGGGTGGCAAGTACTTGAGAGAACACAGGTCTATTCCATCGTCTGAAGTTGATAGTGCACTAAATCAGTGTTCAGATGCCGTGAAGTTGGAAGCATTTTGCGAATCAGTTGTTAAAAAGATAAAAGATTCTCTGGGTTGGCCAGGTGTGATAACGTTGGAAACAAATGTGGGTGCTTGGACTGGCAAAGTACCAGATTATTTGAGGATGGCTGTTGACGAAGACGTGACTGAAGTAACCTTCTTGTGTCCTTTCCCCATTCAACTTATAGCCATCTCCATTCTCCATCAAAACATGGACACATTTCAAATTTCAAATATTAATCAACTTGGCCATTGTCTTTGCTCTCTGGCTAGTGGGAAAGATTTTGTTTGTTTGATGCTGGTGGTTCTGTCAGCAGATGGAAAGATAGTGGGATTCCAACCTCTAAGCAGGGCTGCTGTTAACCATTGGGCTGCCAATCCCTTATCGAAGGAGTTATATGGAGGAAGAAAGCTTTCTCCTGGGTTGACGGAACCTGGTCTCAAGGTCCAGTGTCCAGATGAGGTCGCTGTCATAGAGTTGTTGATGTCAGTAAAACCAGATGCATCATTTGCGTTGGCCCGGCCAGTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

674

Amino Acids

74.71

Weight (kDa)

7.55

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28530 AT1G28530
fragaria_vesca	FvH4_3g08370
malus_domestica	MD05G1308100.v1.1
prunus_persica	Prupe.4G054700_v2.0.a1 Prupe.4G054700_v2.0.a1 Prupe.4G054700_v2.0.a1 Prupe.4G054700_v2.0.a1
pyrus_communis	pycom05g28480
rosa_chinensis	RchiOBHm_Chr5g0009531
rosa_laevigata	RLG00000031669
rosa_multiflora	Rmu_sc0002711.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066600 Rroxscaffold_1G00067300
rosa_rugosa	Rorug04G0444100 Rorug04G0444200
rosa_samantha	Rh5AG075600 Rh5BG070800 Rh5CG083500 Rh5DG071200
rosa_wichuraiana	Rw5G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	45
AccII	CGCG	1 cut(s)	337
AccIII	TCCGGA	1 cut(s)	1051
AciI	CCGC	6 cut(s)	337, 383, 387, 390, 408, 438
AclI	AACGTT	1 cut(s)	1562
AcoI	YGGCCR	5 cut(s)	249, 384, 1547, 1738, 2012
AcsI	RAATTY	4 cut(s)	1055, 1130, 1353, 1716
AcuI	CTGAAG	3 cut(s)	582, 1473, 1659
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	6 cut(s)	320, 482, 487, 1223, 1421, 1599
AfiI	CCNNNNNNNGG	1 cut(s)	706
AflII	CTTAAG	1 cut(s)	1118
AgsI	TTSAA	9 cut(s)	791, 815, 917, 932, 1136, 1347, 1670, 1715, 1722
AhlI	ACTAGT	2 cut(s)	346, 1070
AjiI	CACGTC	1 cut(s)	1633
AjnI	CCWGG	5 cut(s)	270, 664, 1549, 1909, 1924
AloI	GAACNNNNNNTCC	2 cut(s)	443, 475
AluBI	AGCT	8 cut(s)	84, 536, 552, 642, 649, 1088, 1096, 1903
AluI	AGCT	8 cut(s)	84, 536, 552, 642, 649, 1088, 1096, 1903
Alw21I	GWGCWC	4 cut(s)	420, 762, 1378, 1468
Alw26I	GTCTC	3 cut(s)	446, 1342, 1934
Alw44I	GTGCAC	1 cut(s)	1464
AlwNI	CAGNNNCTG	2 cut(s)	154, 376
Ama87I	CYCGRG	1 cut(s)	463
Aor13HI	TCCGGA	1 cut(s)	1051
AoxI	GGCC	7 cut(s)	249, 384, 405, 1547, 1738, 2007, 2012
ApaLI	GTGCAC	1 cut(s)	1464
ApeKI	GCWGC	3 cut(s)	154, 1844, 1862
ApoI	RAATTY	4 cut(s)	1055, 1130, 1353, 1716
AseI	ATTAAT	1 cut(s)	1728
Asp700I	GAANNNNTTC	2 cut(s)	957, 1903
AspLEI	GCGC	2 cut(s)	46, 337
AspS9I	GGNCC	5 cut(s)	265, 709, 1049, 1936, 2008
AsuC2I	CCSGG	4 cut(s)	464, 465, 499, 2011
AsuHPI	GGTGA	2 cut(s)	79, 715
AsuII	TTCGAA	1 cut(s)	859
AvaI	CYCGRG	1 cut(s)	463
AvaII	GGWCC	4 cut(s)	265, 709, 1049, 1936
BaeGI	GKGCMC	2 cut(s)	438, 1468
BalI	TGGCCA	2 cut(s)	1549, 1740
BanII	GRGCYC	1 cut(s)	1313
BbsI	GAAGAC	1 cut(s)	1635
Bbv12I	GWGCWC	4 cut(s)	420, 762, 1378, 1468
BbvI	GCAGC	3 cut(s)	141, 1831, 1849
BceAI	ACGGC	4 cut(s)	289, 341, 396, 1472
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	5 cut(s)	272, 666, 1551, 1911, 1926
BcnI	CCSGG	4 cut(s)	464, 465, 499, 2011
BcoDI	GTCTC	3 cut(s)	446, 1342, 1934
BcuI	ACTAGT	2 cut(s)	346, 1070
BfaI	CTAG	7 cut(s)	347, 516, 588, 650, 867, 1071, 1761
BfrI	CTTAAG	1 cut(s)	1118
BglII	AGATCT	1 cut(s)	1231
BisI	GCNGC	8 cut(s)	155, 338, 384, 387, 390, 408, 1845, 1863
BlsI	GCNGC	8 cut(s)	156, 339, 385, 388, 391, 409, 1846, 1864
BmcAI	AGTACT	1 cut(s)	1421
Bme1390I	CCNGG	9 cut(s)	272, 464, 465, 499, 666, 1551, 1911, 1926, 2011
Bme18I	GGWCC	4 cut(s)	265, 709, 1049, 1936
BmeT110I	CYCGRG	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	1633
BmgT120I	GGNCC	5 cut(s)	265, 709, 1049, 1936, 2008
BmiI	GGNNCC	4 cut(s)	246, 355, 711, 1923
BmrFI	CCNGG	9 cut(s)	272, 464, 465, 499, 666, 1551, 1911, 1926, 2011
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	6 cut(s)	786, 1096, 1474, 1776, 1981, 2003
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	1635
BpmI	CTGGAG	3 cut(s)	254, 658, 1162
Bpu14I	TTCGAA	1 cut(s)	859
BpuEI	CTTGAG	3 cut(s)	713, 1444, 1916
BpuMI	CCSGG	4 cut(s)	464, 465, 499, 2011
BsaBI	GATNNNNATC	1 cut(s)	1110
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	1934
BsaJI	CCNNGG	3 cut(s)	357, 463, 1910
BsaWI	WCCGGW	1 cut(s)	1051
BsaXI	ACNNNNNCTCC	4 cut(s)	443, 473, 1135, 1165
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse1I	ACTGG	5 cut(s)	148, 1038, 1594, 1939, 2015
Bse8I	GATNNNNATC	1 cut(s)	1110
BseAI	TCCGGA	1 cut(s)	1051
BseBI	CCWGG	5 cut(s)	272, 666, 1551, 1911, 1926
BseDI	CCNNGG	3 cut(s)	357, 463, 1910
BseGI	GGATG	3 cut(s)	119, 1129, 1620
BseJI	GATNNNNATC	1 cut(s)	1110
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMII	CTCAG	1 cut(s)	906
BseNI	ACTGG	5 cut(s)	148, 1038, 1594, 1939, 2015
BseRI	GAGGAG	2 cut(s)	115, 414
BseSI	GKGCMC	2 cut(s)	438, 1468
BseX3I	CGGCCG	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	141, 1831, 1849
BseYI	CCCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	1005
Bsh1236I	CGCG	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	7 cut(s)	251, 386, 407, 1549, 1740, 2009, 2014
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	4 cut(s)	420, 762, 1378, 1468
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	5 cut(s)	248, 464, 499, 1052, 2011
BsiWI	CGTACG	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	357, 695
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	3 cut(s)	446, 1342, 1934
BsmFI	GGGAC	2 cut(s)	357, 695
BsnI	GGCC	7 cut(s)	251, 386, 407, 1549, 1740, 2009, 2014
Bso31I	GGTCTC	1 cut(s)	1934
BsoBI	CYCGRG	1 cut(s)	463
Bsp119I	TTCGAA	1 cut(s)	859
Bsp1286I	GDGCHC	6 cut(s)	420, 438, 762, 1313, 1378, 1468
Bsp13I	TCCGGA	1 cut(s)	1051
Bsp143I	GATC	3 cut(s)	34, 688, 1231
BspACI	CCGC	6 cut(s)	337, 383, 387, 390, 408, 438
BspANI	GGCC	7 cut(s)	251, 386, 407, 1549, 1740, 2009, 2014
BspCNI	CTCAG	1 cut(s)	905
BspEI	TCCGGA	1 cut(s)	1051
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	4 cut(s)	246, 355, 711, 1923
BspQI	GCTCTTC	3 cut(s)	209, 290, 792
BspT104I	TTCGAA	1 cut(s)	859
BspTI	CTTAAG	1 cut(s)	1118
BspTNI	GGTCTC	1 cut(s)	1934
BsrI	ACTGG	5 cut(s)	148, 1038, 1594, 1939, 2015
BssECI	CCNNGG	3 cut(s)	357, 463, 1910
BssMI	GATC	3 cut(s)	34, 688, 1231
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	5 cut(s)	272, 666, 1551, 1911, 1926
Bst4CI	ACNGT	3 cut(s)	485, 877, 977
Bst6I	CTCTTC	5 cut(s)	117, 209, 214, 290, 792
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	1118
BstAPI	GCANNNNNTGC	2 cut(s)	1373, 2000
BstBI	TTCGAA	1 cut(s)	859
BstC8I	GCNNGC	6 cut(s)	200, 302, 372, 434, 438, 762
BstDEI	CTNAG	3 cut(s)	728, 892, 1835
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	119, 1129, 1620
BstFNI	CGCG	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	46, 337
BstKTI	GATC	3 cut(s)	37, 691, 1234
BstMAI	GTCTC	3 cut(s)	446, 1342, 1934
BstMBI	GATC	3 cut(s)	34, 688, 1231
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 380, 389, 1373, 2000
BstNI	CCWGG	5 cut(s)	272, 666, 1551, 1911, 1926
BstNSI	RCATGY	1 cut(s)	720
BstSCI	CCNGG	9 cut(s)	270, 462, 463, 497, 664, 1549, 1909, 1924, 2009
BstSLI	GKGCMC	2 cut(s)	438, 1468
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	141, 1831, 1849
BstV2I	GAAGAC	1 cut(s)	1635
BstX2I	RGATCY	1 cut(s)	1231
BstXI	CCANNNNNNTGG	1 cut(s)	1196
BstYI	RGATCY	1 cut(s)	1231
BstZI	CGGCCG	1 cut(s)	384
BsuRI	GGCC	7 cut(s)	251, 386, 407, 1549, 1740, 2009, 2014
BtgI	CCRYGG	1 cut(s)	357
BtrI	CACGTC	1 cut(s)	1633
BtsCI	GGATG	3 cut(s)	119, 1129, 1620
BtsIMutI	CAGTG	4 cut(s)	558, 1378, 1481, 1946
Cac8I	GCNNGC	6 cut(s)	200, 302, 372, 434, 438, 762
CaiI	CAGNNNCTG	2 cut(s)	154, 376
CciNI	GCGGCCGC	1 cut(s)	384
CfoI	GCGC	2 cut(s)	46, 337
Cfr13I	GGNCC	5 cut(s)	265, 709, 1049, 1936, 2008
Cfr9I	CCCGGG	1 cut(s)	463
CseI	GACGC	1 cut(s)	85
CsiI	ACCWGGT	1 cut(s)	1924
Csp6I	GTAC	6 cut(s)	319, 481, 486, 1222, 1420, 1598
CviAII	CATG	2 cut(s)	717, 1702
CviQI	GTAC	6 cut(s)	319, 481, 486, 1222, 1420, 1598
DdeI	CTNAG	3 cut(s)	728, 892, 1835
DpnI	GATC	3 cut(s)	36, 690, 1233
DpnII	GATC	3 cut(s)	34, 688, 1231
EaeI	YGGCCR	5 cut(s)	249, 384, 1547, 1738, 2012
EagI	CGGCCG	1 cut(s)	384
Eam1104I	CTCTTC	5 cut(s)	117, 209, 214, 290, 792
EarI	CTCTTC	5 cut(s)	117, 209, 214, 290, 792
EclXI	CGGCCG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	1313
Eco31I	GGTCTC	1 cut(s)	1934
Eco47I	GGWCC	4 cut(s)	265, 709, 1049, 1936
Eco52I	CGGCCG	1 cut(s)	384
Eco57I	CTGAAG	3 cut(s)	582, 1473, 1659
Eco88I	CYCGRG	1 cut(s)	463
EcoO109I	RGGNCCY	2 cut(s)	265, 709
EcoRI	GAATTC	1 cut(s)	1353
EcoRII	CCWGG	5 cut(s)	270, 664, 1549, 1909, 1924
EcoT22I	ATGCAT	1 cut(s)	1996
EcoT38I	GRGCYC	1 cut(s)	1313
FaeI	CATG	2 cut(s)	720, 1705
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FaqI	GGGAC	2 cut(s)	357, 695
FatI	CATG	2 cut(s)	716, 1701
FauI	CCCGC	1 cut(s)	445
Fnu4HI	GCNGC	8 cut(s)	155, 338, 384, 387, 390, 408, 1845, 1863
FokI	GGATG	3 cut(s)	106, 1136, 1627
FriOI	GRGCYC	1 cut(s)	1313
Fsp4HI	GCNGC	8 cut(s)	155, 338, 384, 387, 390, 408, 1845, 1863
FspBI	CTAG	7 cut(s)	347, 516, 588, 650, 867, 1071, 1761
FspI	TGCGCA	1 cut(s)	45
GlaI	GCGC	2 cut(s)	45, 336
GluI	GCNGC	8 cut(s)	155, 338, 384, 387, 390, 408, 1845, 1863
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	3 cut(s)	254, 658, 1162
HaeIII	GGCC	7 cut(s)	251, 386, 407, 1549, 1740, 2009, 2014
HapII	CCGG	5 cut(s)	248, 464, 499, 1052, 2011
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	2 cut(s)	46, 337
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	720, 1705
Hin6I	GCGC	2 cut(s)	44, 335
HinP1I	GCGC	2 cut(s)	44, 335
HincII	GTYRAC	3 cut(s)	1624, 1852, 1917
HindII	GTYRAC	3 cut(s)	1624, 1852, 1917
HindIII	AAGCTT	2 cut(s)	82, 1901
HinfI	GANTC	6 cut(s)	284, 887, 943, 1511, 1535, 1824
HpaI	GTTAAC	1 cut(s)	1852
HpaII	CCGG	5 cut(s)	248, 464, 499, 1052, 2011
HphI	GGTGA	2 cut(s)	79, 715
Hpy166II	GTNNAC	8 cut(s)	6, 104, 1011, 1394, 1466, 1624, 1852, 1917
Hpy188III	TCNNGA	7 cut(s)	493, 588, 637, 692, 812, 1052, 1946
Hpy8I	GTNNAC	8 cut(s)	6, 104, 1011, 1394, 1466, 1624, 1852, 1917
Hpy99I	CGWCG	4 cut(s)	71, 135, 398, 416
HpyAV	CCTTC	4 cut(s)	864, 1130, 1657, 1873
HpyCH4III	ACNGT	3 cut(s)	485, 877, 977
HpyCH4IV	ACGT	3 cut(s)	317, 1562, 1632
HpyCH4V	TGCA	7 cut(s)	716, 777, 1022, 1277, 1367, 1466, 1994
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 380, 389, 1373, 2000
HpyF3I	CTNAG	3 cut(s)	728, 892, 1835
HpySE526I	ACGT	3 cut(s)	317, 1562, 1632
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	720, 1705
HspAI	GCGC	2 cut(s)	44, 335
Kpn2I	TCCGGA	1 cut(s)	1051
KspAI	GTTAAC	1 cut(s)	1852
Kzo9I	GATC	3 cut(s)	34, 688, 1231
LguI	GCTCTTC	3 cut(s)	209, 290, 792
LmnI	GCTCC	4 cut(s)	250, 353, 557, 639
Lsp1109I	GCAGC	3 cut(s)	141, 1831, 1849
LweI	GCATC	6 cut(s)	786, 1096, 1474, 1776, 1981, 2003
MabI	ACCWGGT	1 cut(s)	1924
MaeI	CTAG	7 cut(s)	347, 516, 588, 650, 867, 1071, 1761
MaeII	ACGT	3 cut(s)	317, 1562, 1632
MaeIII	GTNAC	4 cut(s)	467, 721, 1633, 1642
MalI	GATC	3 cut(s)	36, 690, 1233
MboI	GATC	3 cut(s)	34, 688, 1231
MflI	RGATCY	1 cut(s)	1231
MhlI	GDGCHC	6 cut(s)	420, 438, 762, 1313, 1378, 1468
MlsI	TGGCCA	2 cut(s)	1549, 1740
MluNI	TGGCCA	2 cut(s)	1549, 1740
MlyI	GAGTC	2 cut(s)	293, 952
MmeI	TCCRAC	6 cut(s)	331, 498, 1177, 1476, 1545, 1852
Mox20I	TGGCCA	2 cut(s)	1549, 1740
Mph1103I	ATGCAT	1 cut(s)	1996
MroI	TCCGGA	1 cut(s)	1051
MroXI	GAANNNNTTC	2 cut(s)	957, 1903
MscI	TGGCCA	2 cut(s)	1549, 1740
MseI	TTAA	7 cut(s)	525, 981, 1119, 1322, 1521, 1728, 1851
MslI	CAYNNNNRTG	1 cut(s)	1410
Msp20I	TGGCCA	2 cut(s)	1549, 1740
MspCI	CTTAAG	1 cut(s)	1118
MspI	CCGG	5 cut(s)	248, 464, 499, 1052, 2011
MspR9I	CCNGG	9 cut(s)	272, 464, 465, 499, 666, 1551, 1911, 1926, 2011
MvaI	CCWGG	5 cut(s)	272, 666, 1551, 1911, 1926
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	5 cut(s)	306, 380, 389, 1373, 2000
NciI	CCSGG	4 cut(s)	464, 465, 499, 2011
NdeII	GATC	3 cut(s)	34, 688, 1231
NlaIII	CATG	2 cut(s)	720, 1705
NlaIV	GGNNCC	4 cut(s)	246, 355, 711, 1923
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	721, 1633
NotI	GCGGCCGC	1 cut(s)	384
NsbI	TGCGCA	1 cut(s)	45
NsiI	ATGCAT	1 cut(s)	1996
NspI	RCATGY	1 cut(s)	720
NspV	TTCGAA	1 cut(s)	859
PciSI	GCTCTTC	3 cut(s)	209, 290, 792
PdmI	GAANNNNTTC	2 cut(s)	957, 1903
PfeI	GAWTC	4 cut(s)	887, 1511, 1535, 1824
Pfl23II	CGTACG	1 cut(s)	318
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	8 cut(s)	156, 339, 385, 388, 391, 409, 1846, 1864
PleI	GAGTC	2 cut(s)	292, 951
PpsI	GAGTC	2 cut(s)	292, 951
PpuMI	RGGWCCY	2 cut(s)	265, 709
PshBI	ATTAAT	1 cut(s)	1728
Psp1406I	AACGTT	1 cut(s)	1562
Psp5II	RGGWCCY	2 cut(s)	265, 709
Psp6I	CCWGG	5 cut(s)	270, 664, 1549, 1909, 1924
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	5 cut(s)	270, 664, 1549, 1909, 1924
PspLI	CGTACG	1 cut(s)	318
PspN4I	GGNNCC	4 cut(s)	246, 355, 711, 1923
PspPI	GGNCC	5 cut(s)	265, 709, 1049, 1936, 2008
PspPPI	RGGWCCY	2 cut(s)	265, 709
PstNI	CAGNNNCTG	2 cut(s)	154, 376
PsuI	RGATCY	1 cut(s)	1231
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	6 cut(s)	320, 482, 487, 1223, 1421, 1599
RsaNI	GTAC	6 cut(s)	319, 481, 486, 1222, 1420, 1598
RseI	CAYNNNNRTG	1 cut(s)	1410
SapI	GCTCTTC	3 cut(s)	209, 290, 792
SaqAI	TTAA	7 cut(s)	525, 981, 1119, 1322, 1521, 1728, 1851
SatI	GCNGC	8 cut(s)	155, 338, 384, 387, 390, 408, 1845, 1863
Sau3AI	GATC	3 cut(s)	34, 688, 1231
Sau96I	GGNCC	5 cut(s)	265, 709, 1049, 1936, 2008
ScaI	AGTACT	1 cut(s)	1421
SchI	GAGTC	2 cut(s)	293, 952
ScrFI	CCNGG	9 cut(s)	272, 464, 465, 499, 666, 1551, 1911, 1926, 2011
SduI	GDGCHC	6 cut(s)	420, 438, 762, 1313, 1378, 1468
SexAI	ACCWGGT	1 cut(s)	1924
SfaNI	GCATC	6 cut(s)	786, 1096, 1474, 1776, 1981, 2003
SfuI	TTCGAA	1 cut(s)	859
SinI	GGWCC	4 cut(s)	265, 709, 1049, 1936
SmaI	CCCGGG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	1410
SmlI	CTYRAG	4 cut(s)	692, 1118, 1423, 1931
SmoI	CTYRAG	4 cut(s)	692, 1118, 1423, 1931
SpeI	ACTAGT	2 cut(s)	346, 1070
SsiI	CCGC	6 cut(s)	337, 383, 387, 390, 408, 438
SspI	AATATT	1 cut(s)	1726
SspMI	CTAG	7 cut(s)	347, 516, 588, 650, 867, 1071, 1761
StyD4I	CCNGG	9 cut(s)	270, 462, 463, 497, 664, 1549, 1909, 1924, 2009
TaaI	ACNGT	3 cut(s)	485, 877, 977
TaiI	ACGT	3 cut(s)	320, 1565, 1635
TaqI	TCGA	6 cut(s)	66, 494, 859, 951, 1877, 2020
TatI	WGTACW	3 cut(s)	485, 1221, 1419
TauI	GCSGC	5 cut(s)	340, 386, 389, 392, 410
TfiI	GAWTC	4 cut(s)	887, 1511, 1535, 1824
Tru1I	TTAA	7 cut(s)	525, 981, 1119, 1322, 1521, 1728, 1851
Tru9I	TTAA	7 cut(s)	525, 981, 1119, 1322, 1521, 1728, 1851
TscAI	CASTG	4 cut(s)	565, 1378, 1481, 1946
TseFI	GTSAC	2 cut(s)	721, 1633
TseI	GCWGC	3 cut(s)	154, 1844, 1862
Tsp45I	GTSAC	2 cut(s)	721, 1633
TspDTI	ATGAA	5 cut(s)	698, 723, 839, 950, 1242
TspGWI	ACGGA	4 cut(s)	89, 411, 760, 1934
TspMI	CCCGGG	1 cut(s)	463
TspRI	CASTG	4 cut(s)	565, 1378, 1481, 1946
Tth111I	GACNNNGTC	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	1118
VneI	GTGCAC	1 cut(s)	1464
VpaK11BI	GGWCC	4 cut(s)	265, 709, 1049, 1936
VspI	ATTAAT	1 cut(s)	1728
XapI	RAATTY	4 cut(s)	1055, 1130, 1353, 1716
XbaI	TCTAGA	1 cut(s)	587
XceI	RCATGY	1 cut(s)	720
XmaI	CCCGGG	1 cut(s)	463
XmnI	GAANNNNTTC	2 cut(s)	957, 1903
XspI	CTAG	7 cut(s)	347, 516, 588, 650, 867, 1071, 1761
ZrmI	AGTACT	1 cut(s)	1421
Zsp2I	ATGCAT	1 cut(s)	1996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.