RLG00000031669

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010401
Physical Location & Seq
Forward (+)
7211490 .. 7214454
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031669

Sequence Viewer

Length: 1260 bp
ATGAAGGATCTTGAGAACCCCAGAGAGGTCCCTGCATGTGTCACCCTTAGTTCATCAGACGAACGGATTTTATCTGTGCTTGCCGAAGTTGTCTGCATCTCTGCTCTTCAAAATACAGAAAAGCAATTTCTTGAAGATTACATGGGCAAAACACCGAGTAATTTCCTTCATTGGTTTCGAAAGCCTAGAAGGACTGTATCAAAAGATTCCTCAGTTGTCATATACAAATTATTTGAAGATGAGATAGTTGAAAATGCCAAGAGTCTGCTCGAACATTTTCATTCCACGAAGAACAGTTTTAAGTCTGTAAAAGCAAAATCAAAGTGGTGGACACCATCTGCACTCTCTAAACTGGAAAAGATTGGTGGTCCGGAATTTAGTTCTTGGACTAGTGAGTATGTTCCAGCTTACAAGCTACAAATTGATGCTAATCGGCTTAAGGATGTGAAATTTGAAGGCTGGAGAAAATGTGGAGAAAATAGTTGGGAAGTTCTTTTGACACACTCCCAGATGGTTGGATTGGCTGATATAATAGATATGTACTATGAAGATCTTTACACCCTGCCTGATAAAGAACTATCTTGTGGTATTATTGCAAGTTCCACCAACTTATCTAATAAAAAGACGGGCTCGTTCTTGTTAAAATTGCTATCTGTCTCCCTTGCAAGTGGAATTCTTCTCGTTGCAATCAGTGCTCTTGGTCAATTTGGCTTACCTTATCTACATAAAGGTGGCAAGTACTTGAGAGAACACAGGTCTATTCCATCGTCTGAAGTTGATAGTGCACTAAATCAGTGTTCAGATGCCGTGAAGTTGGAAGCATTTTGCGAATCAGTTGTTAAAAAGATAAAAGATTCTCTGGGTTGGCTAGGTGAGATAACGTTGGAAACAAATGTGGGTGCTTGGACTGGCAAAGTACCAGATTATTTGAGGATGGCTGTTGACGAAGACGTGCCAATCTCTCCCCCTTTAGATAAAATTGATGAAGACTTGAAAGCGTCGGCACAAGATATTGCTAGTTATCAGGTGGTTCTGTCAGCAGATGGCAAGATAGTGGGATTCCAACCTCTAAGCAGGGCTGCTGTTAACCATTGGGCTGCCAATCCCTTATCGAAGGAGTTATATGGAGGAAGAAAGCTTTCTCCTGGGTTGACGGAACCTGGTCTCAAGGTCCAGTGCCCAGATGAGGTCGCTGTCATAGAGTTGTTGATGTCAGTAAAACCAGATGCATCATTTGCGTTGGCCCGGCCAGTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

46.43

Weight (kDa)

6.06

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 370
AclI AACGTT 1 cut(s) 881
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 1247
AcsI RAATTY 3 cut(s) 374, 449, 672
AcuI CTGAAG 1 cut(s) 792
AfaI GTAC 3 cut(s) 542, 740, 918
AfiI CCNNNNNNNGG 2 cut(s) 25, 1186
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 6 cut(s) 110, 134, 236, 251, 455, 994
AhlI ACTAGT 1 cut(s) 389
AjiI CACGTC 1 cut(s) 952
AjnI CCWGG 2 cut(s) 1144, 1159
AluBI AGCT 3 cut(s) 407, 415, 1138
AluI AGCT 3 cut(s) 407, 415, 1138
Alw21I GWGCWC 2 cut(s) 697, 787
Alw26I GTCTC 2 cut(s) 661, 1169
Alw44I GTGCAC 1 cut(s) 783
AlwI GGATC 1 cut(s) 15
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 2 cut(s) 1242, 1247
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 2 cut(s) 1079, 1097
ApoI RAATTY 3 cut(s) 374, 449, 672
Asp700I GAANNNNTTC 2 cut(s) 276, 1138
AspS9I GGNCC 4 cut(s) 28, 368, 1171, 1243
AsuC2I CCSGG 1 cut(s) 1246
AsuHPI GGTGA 2 cut(s) 34, 884
AsuII TTCGAA 1 cut(s) 178
AvaII GGWCC 3 cut(s) 28, 368, 1171
BaeGI GKGCMC 2 cut(s) 787, 1181
BanII GRGCYC 1 cut(s) 632
BbsI GAAGAC 2 cut(s) 954, 993
Bbv12I GWGCWC 2 cut(s) 697, 787
BbvI GCAGC 2 cut(s) 1066, 1084
BccI CCATC 5 cut(s) 343, 505, 772, 928, 1037
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 2 cut(s) 1146, 1161
BcnI CCSGG 1 cut(s) 1246
BcoDI GTCTC 2 cut(s) 661, 1169
BcuI ACTAGT 1 cut(s) 389
BfaI CTAG 4 cut(s) 186, 390, 869, 1017
BfrI CTTAAG 1 cut(s) 437
BglII AGATCT 1 cut(s) 550
BisI GCNGC 2 cut(s) 1080, 1098
BlsI GCNGC 2 cut(s) 1081, 1099
BmcAI AGTACT 1 cut(s) 740
Bme1390I CCNGG 3 cut(s) 1146, 1161, 1246
Bme18I GGWCC 3 cut(s) 28, 368, 1171
BmgBI CACGTC 1 cut(s) 952
BmgT120I GGNCC 4 cut(s) 28, 368, 1171, 1243
BmiI GGNNCC 2 cut(s) 30, 1158
BmrFI CCNGG 3 cut(s) 1146, 1161, 1246
BmsI GCATC 5 cut(s) 105, 415, 793, 1216, 1238
BpiI GAAGAC 2 cut(s) 954, 993
BpmI CTGGAG 1 cut(s) 481
Bpu14I TTCGAA 1 cut(s) 178
BpuEI CTTGAG 3 cut(s) 32, 763, 1151
BpuMI CCSGG 1 cut(s) 1246
BsaBI GATNNNNATC 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 1169
BsaJI CCNNGG 1 cut(s) 1145
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 1186
Bse1I ACTGG 4 cut(s) 357, 913, 1174, 1250
Bse8I GATNNNNATC 1 cut(s) 429
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 2 cut(s) 1146, 1161
BseDI CCNNGG 1 cut(s) 1145
BseGI GGATG 2 cut(s) 448, 939
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 2 cut(s) 25, 1186
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 4 cut(s) 357, 913, 1174, 1250
BseSI GKGCMC 2 cut(s) 787, 1181
BseXI GCAGC 2 cut(s) 1066, 1084
BsgI GTGCAG 1 cut(s) 324
BshFI GGCC 2 cut(s) 1244, 1249
BsiHKAI GWGCWC 2 cut(s) 697, 787
BsiSI CCGG 2 cut(s) 371, 1246
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 25, 1186
BsmAI GTCTC 2 cut(s) 661, 1169
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 2 cut(s) 1244, 1249
Bso31I GGTCTC 1 cut(s) 1169
Bsp119I TTCGAA 1 cut(s) 178
Bsp1286I GDGCHC 4 cut(s) 632, 697, 787, 1181
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 2 cut(s) 7, 550
BspANI GGCC 2 cut(s) 1244, 1249
BspCNI CTCAG 1 cut(s) 224
BspEI TCCGGA 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 30, 1158
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 178
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 1169
BsrI ACTGG 4 cut(s) 357, 913, 1174, 1250
BssECI CCNNGG 1 cut(s) 1145
BssMI GATC 2 cut(s) 7, 550
Bst2UI CCWGG 2 cut(s) 1146, 1161
Bst4CI ACNGT 2 cut(s) 196, 296
Bst6I CTCTTC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 437
BstAPI GCANNNNNTGC 2 cut(s) 692, 1235
BstBI TTCGAA 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 47, 211, 1070
BstF5I GGATG 2 cut(s) 448, 939
BstKTI GATC 2 cut(s) 10, 553
BstMAI GTCTC 2 cut(s) 661, 1169
BstMBI GATC 2 cut(s) 7, 550
BstMWI GCNNNNNNNGC 2 cut(s) 692, 1235
BstNI CCWGG 2 cut(s) 1146, 1161
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 3 cut(s) 1144, 1159, 1244
BstSLI GKGCMC 2 cut(s) 787, 1181
BstV1I GCAGC 2 cut(s) 1066, 1084
BstV2I GAAGAC 2 cut(s) 954, 993
BstX2I RGATCY 2 cut(s) 7, 550
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 2 cut(s) 7, 550
BsuRI GGCC 2 cut(s) 1244, 1249
BtrI CACGTC 1 cut(s) 952
BtsCI GGATG 2 cut(s) 448, 939
BtsIMutI CAGTG 3 cut(s) 697, 800, 1181
Cac8I GCNNGC 1 cut(s) 81
Cfr13I GGNCC 4 cut(s) 28, 368, 1171, 1243
CseI GACGC 1 cut(s) 987
CsiI ACCWGGT 1 cut(s) 1159
Csp6I GTAC 3 cut(s) 541, 739, 917
CviAII CATG 2 cut(s) 36, 142
CviQI GTAC 3 cut(s) 541, 739, 917
DdeI CTNAG 3 cut(s) 47, 211, 1070
DpnI GATC 2 cut(s) 9, 552
DpnII GATC 2 cut(s) 7, 550
EaeI YGGCCR 1 cut(s) 1247
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 632
Eco31I GGTCTC 1 cut(s) 1169
Eco47I GGWCC 3 cut(s) 28, 368, 1171
Eco57I CTGAAG 1 cut(s) 792
EcoO109I RGGNCCY 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 672
EcoRII CCWGG 2 cut(s) 1144, 1159
EcoT22I ATGCAT 1 cut(s) 1231
EcoT38I GRGCYC 1 cut(s) 632
FaeI CATG 2 cut(s) 39, 145
FaqI GGGAC 1 cut(s) 14
FatI CATG 2 cut(s) 35, 141
Fnu4HI GCNGC 2 cut(s) 1080, 1098
FokI GGATG 2 cut(s) 455, 946
FriOI GRGCYC 1 cut(s) 632
Fsp4HI GCNGC 2 cut(s) 1080, 1098
FspBI CTAG 4 cut(s) 186, 390, 869, 1017
GluI GCNGC 2 cut(s) 1080, 1098
GsuI CTGGAG 1 cut(s) 481
HaeIII GGCC 2 cut(s) 1244, 1249
HapII CCGG 2 cut(s) 371, 1246
HgaI GACGC 1 cut(s) 987
Hin1II CATG 2 cut(s) 39, 145
HincII GTYRAC 3 cut(s) 943, 1087, 1152
HindII GTYRAC 3 cut(s) 943, 1087, 1152
HindIII AAGCTT 1 cut(s) 1136
HinfI GANTC 5 cut(s) 206, 262, 830, 854, 1059
HpaI GTTAAC 1 cut(s) 1087
HpaII CCGG 2 cut(s) 371, 1246
HphI GGTGA 2 cut(s) 34, 884
Hpy166II GTNNAC 5 cut(s) 330, 785, 943, 1087, 1152
Hpy188I TCNGA 3 cut(s) 58, 772, 802
Hpy188III TCNNGA 3 cut(s) 11, 131, 371
Hpy8I GTNNAC 5 cut(s) 330, 785, 943, 1087, 1152
Hpy99I CGWCG 1 cut(s) 1003
HpyAV CCTTC 4 cut(s) 176, 183, 449, 1108
HpyCH4III ACNGT 2 cut(s) 196, 296
HpyCH4IV ACGT 2 cut(s) 881, 951
HpyCH4V TGCA 8 cut(s) 35, 96, 341, 596, 665, 686, 785, 1229
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 1235
HpyF3I CTNAG 3 cut(s) 47, 211, 1070
HpySE526I ACGT 2 cut(s) 881, 951
Hsp92II CATG 2 cut(s) 39, 145
Kpn2I TCCGGA 1 cut(s) 370
KspAI GTTAAC 1 cut(s) 1087
Kzo9I GATC 2 cut(s) 7, 550
LguI GCTCTTC 1 cut(s) 111
Lsp1109I GCAGC 2 cut(s) 1066, 1084
LweI GCATC 5 cut(s) 105, 415, 793, 1216, 1238
MabI ACCWGGT 1 cut(s) 1159
MaeI CTAG 4 cut(s) 186, 390, 869, 1017
MaeII ACGT 2 cut(s) 881, 951
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 9, 552
MboI GATC 2 cut(s) 7, 550
MboII GAAGA 9 cut(s) 98, 146, 248, 301, 560, 668, 959, 998, 1143
MflI RGATCY 2 cut(s) 7, 550
MhlI GDGCHC 4 cut(s) 632, 697, 787, 1181
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 4 cut(s) 496, 795, 864, 1087
MnlI CCTC 6 cut(s) 19, 220, 924, 1077, 1121, 1180
Mph1103I ATGCAT 1 cut(s) 1231
MroI TCCGGA 1 cut(s) 370
MroXI GAANNNNTTC 2 cut(s) 276, 1138
MseI TTAA 5 cut(s) 300, 438, 641, 840, 1086
MslI CAYNNNNRTG 1 cut(s) 729
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 2 cut(s) 371, 1246
MspR9I CCNGG 3 cut(s) 1146, 1161, 1246
MvaI CCWGG 2 cut(s) 1146, 1161
MwoI GCNNNNNNNGC 2 cut(s) 692, 1235
NciI CCSGG 1 cut(s) 1246
NdeII GATC 2 cut(s) 7, 550
NlaIII CATG 2 cut(s) 39, 145
NlaIV GGNNCC 2 cut(s) 30, 1158
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 1231
NspI RCATGY 1 cut(s) 39
NspV TTCGAA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 2 cut(s) 276, 1138
PfeI GAWTC 4 cut(s) 206, 830, 854, 1059
PkrI GCNGC 2 cut(s) 1081, 1099
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
PpuMI RGGWCCY 1 cut(s) 28
Psp1406I AACGTT 1 cut(s) 881
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 2 cut(s) 1144, 1159
PspGI CCWGG 2 cut(s) 1144, 1159
PspN4I GGNNCC 2 cut(s) 30, 1158
PspPI GGNCC 4 cut(s) 28, 368, 1171, 1243
PspPPI RGGWCCY 1 cut(s) 28
PsuI RGATCY 2 cut(s) 7, 550
RsaI GTAC 3 cut(s) 542, 740, 918
RsaNI GTAC 3 cut(s) 541, 739, 917
RseI CAYNNNNRTG 1 cut(s) 729
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 5 cut(s) 300, 438, 641, 840, 1086
SatI GCNGC 2 cut(s) 1080, 1098
Sau3AI GATC 2 cut(s) 7, 550
Sau96I GGNCC 4 cut(s) 28, 368, 1171, 1243
ScaI AGTACT 1 cut(s) 740
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 3 cut(s) 1146, 1161, 1246
SduI GDGCHC 4 cut(s) 632, 697, 787, 1181
SexAI ACCWGGT 1 cut(s) 1159
SfaNI GCATC 5 cut(s) 105, 415, 793, 1216, 1238
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 3 cut(s) 28, 368, 1171
SmiMI CAYNNNNRTG 1 cut(s) 729
SmlI CTYRAG 4 cut(s) 11, 437, 742, 1166
SmoI CTYRAG 4 cut(s) 11, 437, 742, 1166
SpeI ACTAGT 1 cut(s) 389
SspMI CTAG 4 cut(s) 186, 390, 869, 1017
StyD4I CCNGG 3 cut(s) 1144, 1159, 1244
TaaI ACNGT 2 cut(s) 196, 296
TaiI ACGT 2 cut(s) 884, 954
TaqI TCGA 4 cut(s) 178, 270, 1112, 1255
TatI WGTACW 2 cut(s) 540, 738
TfiI GAWTC 4 cut(s) 206, 830, 854, 1059
Tru1I TTAA 5 cut(s) 300, 438, 641, 840, 1086
Tru9I TTAA 5 cut(s) 300, 438, 641, 840, 1086
TscAI CASTG 3 cut(s) 697, 800, 1181
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 1079, 1097
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 6 cut(s) 17, 42, 158, 269, 561, 999
TspGWI ACGGA 2 cut(s) 79, 1169
TspRI CASTG 3 cut(s) 697, 800, 1181
Vha464I CTTAAG 1 cut(s) 437
VneI GTGCAC 1 cut(s) 783
VpaK11BI GGWCC 3 cut(s) 28, 368, 1171
XapI RAATTY 3 cut(s) 374, 449, 672
XceI RCATGY 1 cut(s) 39
XmnI GAANNNNTTC 2 cut(s) 276, 1138
XspI CTAG 4 cut(s) 186, 390, 869, 1017
ZrmI AGTACT 1 cut(s) 740
Zsp2I ATGCAT 1 cut(s) 1231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.