Rroxscaffold_1G00066600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010401
Physical Location & Seq
Reverse (-)
88134215 .. 88140716
6502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066600.1

Sequence Viewer

Length: 2655 bp
ATGGCGTCCGTCCACTCTCTCTTCCTCCATCCTCCTCTCGTCTCCTTCACACGACCCAGTCGCTGCTCTCTCTACTCCAAACCCCGAAATCCCCGTTTTACCCTCGCCTGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGGAAATCGGCTCCGGCCACCGAGCAGGAGGTCCTCCAGGCGATTTCCGAGTCCTCCGAGAAGAGCCTGCCGTGCGTGAGGACGTACGAGAACGAATTGGCGCGGCTGGGACTAGTCGGAGCCGTGGATTTTCAGCAGGCTCTGACGGCGGCCGCCGCCGACGGAGGAGAGGCCGCCGACGAGCACATTAGGGAGGGCGTGCCCGCTATGGTTGTGGAGACTTTGTTCCCGGGTAACTCCGACCCGTACAGTACAATCTCGACCCGGCTGTTTCTTCCTGCTAGAAAAGTTAAAGAAAAAGCTGGTAAATTGAGAAGCTCCATCACTGAAGATATGCTGTCAAGCACTACTTCTAGAAACATACTTTCTATGACATTTAGACAAGTAGTGTTAGAACTGCTCTGGAGCTTTCAGCTAGTTGTTTTCAGACCTGGAACTCAAAGGAATATGAACGATCTTGAGAACCCCAGAGAGGTCCCTGCATGTGTCACCCTTAGTTCATCAGACGAACGGATTTTATCTGTGCTCGCAGAAGTTGTCTGCATCTCTGCTCTTCAAAATACAGAAAAACAATTTCTTGAAGATTACACGGGCAAAACACCGAGTAATTTTCTTCATTGGTTTCGAAAGCCTAGAAGGACTGTATCAAAAGATTCCTCAGTTGTCATATACAAATTATTTGAAGATGAGATAGTTGAAAATGCCAAGAGTCTGCTCGAACATTTTCATTCCACGAAGAACAGTTTTAAGTCTGTAAAAGCAAAATCAAAGTGGTGGACACCATCTGCACTCTCTAAACTGGAAAAGATTGGTGGTCCGGAATTTAGTTCTTGGACTAGTGAGTATGTTCCAGCTTACAAGCTACAAATTGATGCTAATCGGCTTAAGGATGTGAAATTTGAAGGCTGGAGAAAATGTGGAGAAAATAGTTGGGAAGTTCTTTTGACACACTCCCAGATGGTTGGATTGGCTGATATAATAGATATGTACTATGAAGATCTTTACACCCTGCCTGATAAAGAACTATCTTGTGGTGTTATTGCAAGTTCCACCAACTTATCTAATAAAAAGACGGGCTCGTTCTTATTAAAATTGCTATCTGTCTCCCTTTCAAGTGGAATTCTTCTCGTTGCAATCAGTGCTCTTGGTCAATTTGGTTTACCTTATCTACATAAGGGTGGCAAGTACTTGAGAGAACACAGGTCTATTCCATCGTCTGAAGTTGATAGTGCACTAAATCAGTGTTCAGATGCCGTGAAGTTGGAAGCATTTTGCGAATCAGTTGTTAAAAAGATAAAAGATTCTCTGGGTTGGCCAGGTGTGATAACGTTGGAAACAAATGTGGGTGCTTGGACTGGCAAAGTACCAGATTATTTGAGGATGGCTGTTGACGAAGACGTGCTAATATCTCCCCCTTTAGATAAAATTGATGAAGACTTGAAAGCGTCGGCACAAGATATTGCTAGTTATCAGGTGGTTCTGTCAGCAGATGGAAAGATAGTGGGATTCCAACCTCTAAGCAGGGCTGCTGTTAACCATTGGGCTGCCAATCCCTTATCGAAGGAGTTATATGGAGGAAGAAAGCTTTCTCCTGGGTTGACGGAACCTGGTCTCAAGGTCCAGTGTCCAGATGAGGTCGCTGTCATAGAGTTGTTGATGTCAGTAAAACCAGATGCATCATTTGCGTTGGCCCGGCCACACTATAATCTCCACCCTCATCTCATTACATTCATTCCCCTCGATGTCCCTCATGTCGATGGCCTCCTTCTGGGGACTGAAACCACAGCTGACATTCCTCTCTCTTTAGGCTCTCTTCTTGCCACCGCCATGGACCTCACCCGACCCCAAATCGAACAATATCTCCTCAAACTCAAGCCTGATTTTGTGTTCTTCGATTTTAGTTACTGGTTGCCTGATTTGTTGCGTCAACTAGGCAATAAGATTCAGTCAGTATGTTACTGGCTAGTTGATCCTGCAAGTGTGTGGTACCTGCTAAACCGAGGCCTGTCGAGAAAGAAAGCATTGGATGAAGTTGATCCTGTACACCCTTTGCTGTGTTTCAGTAGTTCATTCTCAATCAAGTTACAGACTCACGAAGCTCGAGCTTTTGATGCCTTGGAAAACAAGGAACAGCCTTTGATACTGAAGCGCCCATCTGTGGGTTGCTTTGTGACTCACTGCGGTTCGGGGTCTTTAAATGAGGCGTTACTGAATGAGTGCCAACTGGTGCTTCTACCACATGTGGGAGATCAGATTATCAACGAGAGAATCATGAGTGGTGATTTGAAGGTGGGAGTTGAAGTTGAAAAAGGAGATGAAGATGGATTGTTCACCAAGGAAGGTGTCTGTAAAGCTGTGAAAGCAGTGATGGTTGAGGACAGTGAGGTGGGAAAGGAGGTGAGGACCAACCATGCTAAGTGGAGGGAGTTCTTCTCCAATAAAGAGCTTGAGAGCTCATATATTGATGGTTTTGTGCAGAAGCTGCATGAACTGCTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

884

Amino Acids

97.89

Weight (kDa)

5.99

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 764 - 844 1.2e-06 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2151
Acc65I GGTACC 1 cut(s) 2139
AccB1I GGYRCC 1 cut(s) 2139
AccII CGCG 1 cut(s) 256
AccIII TCCGGA 1 cut(s) 970
AciI CCGC 8 cut(s) 256, 302, 306, 309, 327, 357, 1977, 2334
AclI AACGTT 1 cut(s) 1481
AclWI GGATC 2 cut(s) 2117, 2183
AcoI YGGCCR 4 cut(s) 168, 303, 1466, 1847
AcsI RAATTY 3 cut(s) 974, 1049, 1272
AcuI CTGAAG 3 cut(s) 501, 1392, 2318
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 8 cut(s) 239, 401, 406, 1142, 1340, 1518, 2141, 2196
AfiI CCNNNNNNNGG 5 cut(s) 625, 1921, 2311, 2312, 2396
AflII CTTAAG 1 cut(s) 1037
AflIII ACRYGT 1 cut(s) 2392
AhlI ACTAGT 2 cut(s) 265, 989
AjiI CACGTC 1 cut(s) 1552
AjnI CCWGG 5 cut(s) 189, 583, 1468, 1744, 1759
AjuI GAANNNNNNNTTGG 2 cut(s) 2367, 2399
AloI GAACNNNNNNTCC 4 cut(s) 362, 394, 1998, 2030
Alw21I GWGCWC 5 cut(s) 339, 681, 1297, 1387, 2609
Alw26I GTCTC 4 cut(s) 46, 365, 1261, 1769
Alw44I GTGCAC 1 cut(s) 1383
AlwI GGATC 2 cut(s) 2117, 2183
AlwNI CAGNNNCTG 3 cut(s) 63, 295, 2635
Ama87I CYCGRG 2 cut(s) 382, 2253
Aor13HI TCCGGA 1 cut(s) 970
AoxI GGCC 8 cut(s) 168, 303, 324, 1466, 1842, 1847, 1912, 2155
ApaLI GTGCAC 1 cut(s) 1383
ApeKI GCWGC 4 cut(s) 63, 1679, 1697, 2635
ApoI RAATTY 3 cut(s) 974, 1049, 1272
Asp700I GAANNNNTTC 2 cut(s) 876, 1738
Asp718I GGTACC 1 cut(s) 2139
AspLEI GCGC 2 cut(s) 256, 2304
AspS9I GGNCC 7 cut(s) 184, 628, 968, 1771, 1843, 1984, 2556
AsuC2I CCSGG 4 cut(s) 383, 384, 418, 1846
AsuHPI GGTGA 5 cut(s) 634, 1981, 2444, 2476, 2563
AsuII TTCGAA 1 cut(s) 778
AvaI CYCGRG 2 cut(s) 382, 2253
AvaII GGWCC 6 cut(s) 184, 628, 968, 1771, 1984, 2556
BaeGI GKGCMC 2 cut(s) 357, 1387
BalI TGGCCA 1 cut(s) 1468
BanI GGYRCC 1 cut(s) 2139
BanII GRGCYC 2 cut(s) 1232, 2609
BbsI GAAGAC 2 cut(s) 1554, 1593
Bbv12I GWGCWC 5 cut(s) 339, 681, 1297, 1387, 2609
BbvI GCAGC 4 cut(s) 50, 1666, 1684, 2622
BceAI ACGGC 4 cut(s) 208, 260, 315, 1391
BciT130I CCWGG 5 cut(s) 191, 585, 1470, 1746, 1761
BcnI CCSGG 4 cut(s) 383, 384, 418, 1846
BcoDI GTCTC 4 cut(s) 46, 365, 1261, 1769
BcuI ACTAGT 2 cut(s) 265, 989
BfaI CTAG 9 cut(s) 266, 435, 507, 569, 786, 990, 1617, 2084, 2117
BfoI RGCGCY 1 cut(s) 2305
BfrI CTTAAG 1 cut(s) 1037
BfuAI ACCTGC 1 cut(s) 2151
BglII AGATCT 1 cut(s) 1150
BisI GCNGC 9 cut(s) 64, 257, 303, 306, 309, 327, 1680, 1698, 2636
BlsI GCNGC 9 cut(s) 65, 258, 304, 307, 310, 328, 1681, 1699, 2637
BmcAI AGTACT 1 cut(s) 1340
Bme1390I CCNGG 9 cut(s) 191, 383, 384, 418, 585, 1470, 1746, 1761, 1846
Bme18I GGWCC 6 cut(s) 184, 628, 968, 1771, 1984, 2556
BmeT110I CYCGRG 2 cut(s) 382, 2253
BmgBI CACGTC 1 cut(s) 1552
BmgT120I GGNCC 7 cut(s) 184, 628, 968, 1771, 1843, 1984, 2556
BmiI GGNNCC 5 cut(s) 165, 274, 630, 1758, 2141
BmrFI CCNGG 9 cut(s) 191, 383, 384, 418, 585, 1470, 1746, 1761, 1846
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 6 cut(s) 705, 1015, 1393, 1816, 1838, 2254
BmuI ACTGGG 1 cut(s) 51
BpiI GAAGAC 2 cut(s) 1554, 1593
BplI GAGNNNNNCTC 2 cut(s) 2570, 2602
BpmI CTGGAG 3 cut(s) 173, 577, 1081
Bpu14I TTCGAA 1 cut(s) 778
BpuEI CTTGAG 5 cut(s) 632, 1363, 1751, 2009, 2621
BpuMI CCSGG 4 cut(s) 383, 384, 418, 1846
BsaBI GATNNNNATC 1 cut(s) 1029
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1769
BsaJI CCNNGG 7 cut(s) 276, 382, 1745, 1980, 2152, 2268, 2487
BsaWI WCCGGW 1 cut(s) 970
BsaXI ACNNNNNCTCC 8 cut(s) 362, 392, 1054, 1084, 1998, 2028, 2439, 2469
Bsc4I CCNNNNNNNGG 5 cut(s) 625, 1921, 2311, 2312, 2396
Bse1I ACTGG 7 cut(s) 57, 957, 1513, 1774, 2063, 2117, 2382
Bse8I GATNNNNATC 1 cut(s) 1029
BseAI TCCGGA 1 cut(s) 970
BseBI CCWGG 5 cut(s) 191, 585, 1470, 1746, 1761
BseDI CCNNGG 7 cut(s) 276, 382, 1745, 1980, 2152, 2268, 2487
BseGI GGATG 4 cut(s) 28, 1048, 1539, 2185
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 5 cut(s) 625, 1921, 2311, 2312, 2396
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 7 cut(s) 57, 957, 1513, 1774, 2063, 2117, 2382
BseRI GAGGAG 3 cut(s) 24, 333, 2006
BseSI GKGCMC 2 cut(s) 357, 1387
BseX3I CGGCCG 1 cut(s) 303
BseXI GCAGC 4 cut(s) 50, 1666, 1684, 2622
BseYI CCCAGC 2 cut(s) 259, 2647
BsgI GTGCAG 2 cut(s) 924, 2648
Bsh1236I CGCG 1 cut(s) 256
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 8 cut(s) 170, 305, 326, 1468, 1844, 1849, 1914, 2157
BshNI GGYRCC 1 cut(s) 2139
BsiEI CGRYCG 1 cut(s) 306
BsiHKAI GWGCWC 5 cut(s) 339, 681, 1297, 1387, 2609
BsiHKCI CYCGRG 2 cut(s) 382, 2253
BsiSI CCGG 5 cut(s) 167, 383, 418, 971, 1846
BsiWI CGTACG 1 cut(s) 237
BslFI GGGAC 4 cut(s) 276, 614, 1883, 1939
BslI CCNNNNNNNGG 5 cut(s) 625, 1921, 2311, 2312, 2396
BsmAI GTCTC 4 cut(s) 46, 365, 1261, 1769
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 4 cut(s) 276, 614, 1883, 1939
BsnI GGCC 8 cut(s) 170, 305, 326, 1468, 1844, 1849, 1914, 2157
Bso31I GGTCTC 1 cut(s) 1769
BsoBI CYCGRG 2 cut(s) 382, 2253
Bsp119I TTCGAA 1 cut(s) 778
Bsp1286I GDGCHC 7 cut(s) 339, 357, 681, 1232, 1297, 1387, 2609
Bsp13I TCCGGA 1 cut(s) 970
Bsp1407I TGTACA 1 cut(s) 2194
Bsp143I GATC 5 cut(s) 607, 1150, 2122, 2188, 2401
Bsp19I CCATGG 1 cut(s) 1980
BspACI CCGC 8 cut(s) 256, 302, 306, 309, 327, 357, 1977, 2334
BspANI GGCC 8 cut(s) 170, 305, 326, 1468, 1844, 1849, 1914, 2157
BspCNI CTCAG 1 cut(s) 824
BspEI TCCGGA 1 cut(s) 970
BspFNI CGCG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 2424
BspLI GGNNCC 5 cut(s) 165, 274, 630, 1758, 2141
BspMI ACCTGC 1 cut(s) 2151
BspPI GGATC 2 cut(s) 2117, 2183
BspQI GCTCTTC 3 cut(s) 118, 209, 711
BspT104I TTCGAA 1 cut(s) 778
BspT107I GGYRCC 1 cut(s) 2139
BspTI CTTAAG 1 cut(s) 1037
BspTNI GGTCTC 1 cut(s) 1769
BsrGI TGTACA 1 cut(s) 2194
BsrI ACTGG 7 cut(s) 57, 957, 1513, 1774, 2063, 2117, 2382
BssECI CCNNGG 7 cut(s) 276, 382, 1745, 1980, 2152, 2268, 2487
BssMI GATC 5 cut(s) 607, 1150, 2122, 2188, 2401
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 1980, 2268, 2487
Bst2UI CCWGG 5 cut(s) 191, 585, 1470, 1746, 1761
Bst4CI ACNGT 4 cut(s) 404, 796, 896, 2534
Bst6I CTCTTC 5 cut(s) 26, 118, 209, 711, 1971
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 1037
BstAPI GCANNNNNTGC 4 cut(s) 1292, 1835, 2635, 2644
BstAUI TGTACA 1 cut(s) 2194
BstBI TTCGAA 1 cut(s) 778
BstC8I GCNNGC 6 cut(s) 109, 221, 291, 353, 357, 681
BstDEI CTNAG 4 cut(s) 647, 811, 1670, 2568
BstDSI CCRYGG 2 cut(s) 276, 1980
BstF5I GGATG 4 cut(s) 28, 1048, 1539, 2185
BstFNI CGCG 1 cut(s) 256
BstH2I RGCGCY 1 cut(s) 2305
BstHHI GCGC 2 cut(s) 256, 2304
BstKTI GATC 5 cut(s) 610, 1153, 2125, 2191, 2404
BstMAI GTCTC 4 cut(s) 46, 365, 1261, 1769
BstMBI GATC 5 cut(s) 607, 1150, 2122, 2188, 2401
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 9 cut(s) 225, 299, 308, 1292, 1835, 2264, 2513, 2635, 2644
BstNI CCWGG 5 cut(s) 191, 585, 1470, 1746, 1761
BstNSI RCATGY 2 cut(s) 639, 2396
BstSCI CCNGG 9 cut(s) 189, 381, 382, 416, 583, 1468, 1744, 1759, 1844
BstSLI GKGCMC 2 cut(s) 357, 1387
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 4 cut(s) 50, 1666, 1684, 2622
BstV2I GAAGAC 2 cut(s) 1554, 1593
BstX2I RGATCY 1 cut(s) 1150
BstXI CCANNNNNNTGG 2 cut(s) 1115, 1981
BstYI RGATCY 1 cut(s) 1150
BstZI CGGCCG 1 cut(s) 303
BsuRI GGCC 8 cut(s) 170, 305, 326, 1468, 1844, 1849, 1914, 2157
BtgI CCRYGG 2 cut(s) 276, 1980
BtrI CACGTC 1 cut(s) 1552
BtsCI GGATG 4 cut(s) 28, 1048, 1539, 2185
BtsI GCAGTG 2 cut(s) 2329, 2523
BtsIMutI CAGTG 7 cut(s) 477, 1297, 1400, 1781, 2329, 2523, 2539
BveI ACCTGC 1 cut(s) 2151
Cac8I GCNNGC 6 cut(s) 109, 221, 291, 353, 357, 681
CaiI CAGNNNCTG 3 cut(s) 63, 295, 2635
CciI TCATGA 1 cut(s) 2424
CciNI GCGGCCGC 1 cut(s) 303
CfoI GCGC 2 cut(s) 256, 2304
Cfr13I GGNCC 7 cut(s) 184, 628, 968, 1771, 1843, 1984, 2556
Cfr9I CCCGGG 1 cut(s) 382
CseI GACGC 2 cut(s) 1587, 2066
CsiI ACCWGGT 1 cut(s) 1759
Csp6I GTAC 8 cut(s) 238, 400, 405, 1141, 1339, 1517, 2140, 2195
CviAII CATG 7 cut(s) 636, 1904, 1981, 2393, 2425, 2564, 2639
CviQI GTAC 8 cut(s) 238, 400, 405, 1141, 1339, 1517, 2140, 2195
DdeI CTNAG 4 cut(s) 647, 811, 1670, 2568
DpnI GATC 5 cut(s) 609, 1152, 2124, 2190, 2403
DpnII GATC 5 cut(s) 607, 1150, 2122, 2188, 2401
DraI TTTAAA 1 cut(s) 2349
EaeI YGGCCR 4 cut(s) 168, 303, 1466, 1847
EagI CGGCCG 1 cut(s) 303
Eam1104I CTCTTC 5 cut(s) 26, 118, 209, 711, 1971
EarI CTCTTC 5 cut(s) 26, 118, 209, 711, 1971
Ecl136II GAGCTC 1 cut(s) 2607
EclXI CGGCCG 1 cut(s) 303
Eco130I CCWWGG 3 cut(s) 1980, 2268, 2487
Eco147I AGGCCT 1 cut(s) 2157
Eco24I GRGCYC 2 cut(s) 1232, 2609
Eco31I GGTCTC 1 cut(s) 1769
Eco47I GGWCC 6 cut(s) 184, 628, 968, 1771, 1984, 2556
Eco52I CGGCCG 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 2607
Eco57I CTGAAG 3 cut(s) 501, 1392, 2318
Eco88I CYCGRG 2 cut(s) 382, 2253
EcoICRI GAGCTC 1 cut(s) 2607
EcoO109I RGGNCCY 2 cut(s) 184, 628
EcoRI GAATTC 1 cut(s) 1272
EcoRII CCWGG 5 cut(s) 189, 583, 1468, 1744, 1759
EcoT14I CCWWGG 3 cut(s) 1980, 2268, 2487
EcoT22I ATGCAT 1 cut(s) 1831
EcoT38I GRGCYC 2 cut(s) 1232, 2609
ErhI CCWWGG 3 cut(s) 1980, 2268, 2487
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 7 cut(s) 639, 1907, 1984, 2396, 2428, 2567, 2642
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FaqI GGGAC 4 cut(s) 276, 614, 1883, 1939
FatI CATG 7 cut(s) 635, 1903, 1980, 2392, 2424, 2563, 2638
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 9 cut(s) 64, 257, 303, 306, 309, 327, 1680, 1698, 2636
FokI GGATG 4 cut(s) 15, 1055, 1546, 2192
FriOI GRGCYC 2 cut(s) 1232, 2609
Fsp4HI GCNGC 9 cut(s) 64, 257, 303, 306, 309, 327, 1680, 1698, 2636
FspBI CTAG 9 cut(s) 266, 435, 507, 569, 786, 990, 1617, 2084, 2117
GlaI GCGC 2 cut(s) 255, 2303
GluI GCNGC 9 cut(s) 64, 257, 303, 306, 309, 327, 1680, 1698, 2636
GsaI CCCAGC 2 cut(s) 263, 2651
GsuI CTGGAG 3 cut(s) 173, 577, 1081
HaeII RGCGCY 1 cut(s) 2305
HaeIII GGCC 8 cut(s) 170, 305, 326, 1468, 1844, 1849, 1914, 2157
HapII CCGG 5 cut(s) 167, 383, 418, 971, 1846
HgaI GACGC 2 cut(s) 1587, 2066
HhaI GCGC 2 cut(s) 256, 2304
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 639, 1907, 1984, 2396, 2428, 2567, 2642
Hin6I GCGC 2 cut(s) 254, 2302
HinP1I GCGC 2 cut(s) 254, 2302
HincII GTYRAC 4 cut(s) 1543, 1687, 1752, 2081
HindII GTYRAC 4 cut(s) 1543, 1687, 1752, 2081
HindIII AAGCTT 1 cut(s) 1736
HpaI GTTAAC 1 cut(s) 1687
HpaII CCGG 5 cut(s) 167, 383, 418, 971, 1846
HphI GGTGA 5 cut(s) 634, 1981, 2444, 2476, 2563
Hpy99I CGWCG 3 cut(s) 317, 335, 1603
HpyAV CCTTC 7 cut(s) 55, 783, 1049, 1708, 1928, 2434, 2486
HpyCH4III ACNGT 4 cut(s) 404, 796, 896, 2534
HpyCH4IV ACGT 3 cut(s) 236, 1481, 1551
HpyF10VI GCNNNNNNNGC 9 cut(s) 225, 299, 308, 1292, 1835, 2264, 2513, 2635, 2644
HpyF3I CTNAG 4 cut(s) 647, 811, 1670, 2568
HpySE526I ACGT 3 cut(s) 236, 1481, 1551
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 639, 1907, 1984, 2396, 2428, 2567, 2642
HspAI GCGC 2 cut(s) 254, 2302
Kpn2I TCCGGA 1 cut(s) 970
KpnI GGTACC 1 cut(s) 2143
KspAI GTTAAC 1 cut(s) 1687
Kzo9I GATC 5 cut(s) 607, 1150, 2122, 2188, 2401
LguI GCTCTTC 3 cut(s) 118, 209, 711
LmnI GCTCC 4 cut(s) 169, 272, 476, 558
Lsp1109I GCAGC 4 cut(s) 50, 1666, 1684, 2622
LweI GCATC 6 cut(s) 705, 1015, 1393, 1816, 1838, 2254
MabI ACCWGGT 1 cut(s) 1759
MaeI CTAG 9 cut(s) 266, 435, 507, 569, 786, 990, 1617, 2084, 2117
MaeII ACGT 3 cut(s) 236, 1481, 1551
MaeIII GTNAC 7 cut(s) 386, 640, 2054, 2108, 2235, 2323, 2358
MalI GATC 5 cut(s) 609, 1152, 2124, 2190, 2403
MboI GATC 5 cut(s) 607, 1150, 2122, 2188, 2401
MflI RGATCY 1 cut(s) 1150
MhlI GDGCHC 7 cut(s) 339, 357, 681, 1232, 1297, 1387, 2609
MlsI TGGCCA 1 cut(s) 1468
MluNI TGGCCA 1 cut(s) 1468
MlyI GAGTC 4 cut(s) 212, 871, 2236, 2320
MmeI TCCRAC 6 cut(s) 250, 417, 1096, 1395, 1464, 1687
Mox20I TGGCCA 1 cut(s) 1468
Mph1103I ATGCAT 1 cut(s) 1831
MroI TCCGGA 1 cut(s) 970
MroXI GAANNNNTTC 2 cut(s) 876, 1738
MscI TGGCCA 1 cut(s) 1468
MseI TTAA 7 cut(s) 444, 900, 1038, 1241, 1440, 1686, 2348
MslI CAYNNNNRTG 3 cut(s) 1329, 1908, 1979
Msp20I TGGCCA 1 cut(s) 1468
MspA1I CMGCKG 1 cut(s) 1940
MspCI CTTAAG 1 cut(s) 1037
MspI CCGG 5 cut(s) 167, 383, 418, 971, 1846
MspR9I CCNGG 9 cut(s) 191, 383, 384, 418, 585, 1470, 1746, 1761, 1846
MvaI CCWGG 5 cut(s) 191, 585, 1470, 1746, 1761
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 9 cut(s) 225, 299, 308, 1292, 1835, 2264, 2513, 2635, 2644
NciI CCSGG 4 cut(s) 383, 384, 418, 1846
NcoI CCATGG 1 cut(s) 1980
NdeII GATC 5 cut(s) 607, 1150, 2122, 2188, 2401
NlaIII CATG 7 cut(s) 639, 1907, 1984, 2396, 2428, 2567, 2642
NlaIV GGNNCC 5 cut(s) 165, 274, 630, 1758, 2141
NmuCI GTSAC 2 cut(s) 640, 2323
NotI GCGGCCGC 1 cut(s) 303
NsiI ATGCAT 1 cut(s) 1831
NspI RCATGY 2 cut(s) 639, 2396
NspV TTCGAA 1 cut(s) 778
PaeR7I CTCGAG 1 cut(s) 2253
PagI TCATGA 1 cut(s) 2424
PceI AGGCCT 1 cut(s) 2157
PciI ACATGT 1 cut(s) 2392
PciSI GCTCTTC 3 cut(s) 118, 209, 711
PdmI GAANNNNTTC 2 cut(s) 876, 1738
PfeI GAWTC 6 cut(s) 806, 1430, 1454, 1659, 2095, 2421
Pfl23II CGTACG 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 57
PkrI GCNGC 9 cut(s) 65, 258, 304, 307, 310, 328, 1681, 1699, 2637
PleI GAGTC 4 cut(s) 211, 870, 2236, 2320
PpsI GAGTC 4 cut(s) 211, 870, 2236, 2320
PpuMI RGGWCCY 2 cut(s) 184, 628
PscI ACATGT 1 cut(s) 2392
Psp124BI GAGCTC 1 cut(s) 2609
Psp1406I AACGTT 1 cut(s) 1481
Psp5II RGGWCCY 2 cut(s) 184, 628
Psp6I CCWGG 5 cut(s) 189, 583, 1468, 1744, 1759
PspFI CCCAGC 2 cut(s) 259, 2647
PspGI CCWGG 5 cut(s) 189, 583, 1468, 1744, 1759
PspLI CGTACG 1 cut(s) 237
PspN4I GGNNCC 5 cut(s) 165, 274, 630, 1758, 2141
PspPI GGNCC 7 cut(s) 184, 628, 968, 1771, 1843, 1984, 2556
PspPPI RGGWCCY 2 cut(s) 184, 628
PspXI VCTCGAGB 1 cut(s) 2253
PstNI CAGNNNCTG 3 cut(s) 63, 295, 2635
PsuI RGATCY 1 cut(s) 1150
PsyI GACNNNGTC 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 1940
RsaI GTAC 8 cut(s) 239, 401, 406, 1142, 1340, 1518, 2141, 2196
RsaNI GTAC 8 cut(s) 238, 400, 405, 1141, 1339, 1517, 2140, 2195
RseI CAYNNNNRTG 3 cut(s) 1329, 1908, 1979
SacI GAGCTC 1 cut(s) 2609
SapI GCTCTTC 3 cut(s) 118, 209, 711
SaqAI TTAA 7 cut(s) 444, 900, 1038, 1241, 1440, 1686, 2348
SatI GCNGC 9 cut(s) 64, 257, 303, 306, 309, 327, 1680, 1698, 2636
Sau3AI GATC 5 cut(s) 607, 1150, 2122, 2188, 2401
Sau96I GGNCC 7 cut(s) 184, 628, 968, 1771, 1843, 1984, 2556
ScaI AGTACT 1 cut(s) 1340
SchI GAGTC 4 cut(s) 212, 871, 2236, 2320
ScrFI CCNGG 9 cut(s) 191, 383, 384, 418, 585, 1470, 1746, 1761, 1846
SduI GDGCHC 7 cut(s) 339, 357, 681, 1232, 1297, 1387, 2609
SexAI ACCWGGT 1 cut(s) 1759
SfaNI GCATC 6 cut(s) 705, 1015, 1393, 1816, 1838, 2254
Sfr274I CTCGAG 1 cut(s) 2253
SfuI TTCGAA 1 cut(s) 778
SinI GGWCC 6 cut(s) 184, 628, 968, 1771, 1984, 2556
SlaI CTCGAG 1 cut(s) 2253
SmaI CCCGGG 1 cut(s) 384
SmiMI CAYNNNNRTG 3 cut(s) 1329, 1908, 1979
SmlI CTYRAG 7 cut(s) 611, 1037, 1342, 1766, 2024, 2253, 2600
SmoI CTYRAG 7 cut(s) 611, 1037, 1342, 1766, 2024, 2253, 2600
SpeI ACTAGT 2 cut(s) 265, 989
SseBI AGGCCT 1 cut(s) 2157
SsiI CCGC 8 cut(s) 256, 302, 306, 309, 327, 357, 1977, 2334
SspMI CTAG 9 cut(s) 266, 435, 507, 569, 786, 990, 1617, 2084, 2117
SstI GAGCTC 1 cut(s) 2609
StuI AGGCCT 1 cut(s) 2157
StyD4I CCNGG 9 cut(s) 189, 381, 382, 416, 583, 1468, 1744, 1759, 1844
StyI CCWWGG 3 cut(s) 1980, 2268, 2487
TaaI ACNGT 4 cut(s) 404, 796, 896, 2534
TaiI ACGT 3 cut(s) 239, 1484, 1554
TatI WGTACW 4 cut(s) 404, 1140, 1338, 2194
TauI GCSGC 5 cut(s) 259, 305, 308, 311, 329
TfiI GAWTC 6 cut(s) 806, 1430, 1454, 1659, 2095, 2421
Tru1I TTAA 7 cut(s) 444, 900, 1038, 1241, 1440, 1686, 2348
Tru9I TTAA 7 cut(s) 444, 900, 1038, 1241, 1440, 1686, 2348
TscAI CASTG 7 cut(s) 484, 1297, 1400, 1781, 2336, 2523, 2539
TseFI GTSAC 2 cut(s) 640, 2323
TseI GCWGC 4 cut(s) 63, 1679, 1697, 2635
Tsp45I GTSAC 2 cut(s) 640, 2323
TspGWI ACGGA 3 cut(s) 330, 679, 1769
TspMI CCCGGG 1 cut(s) 382
TspRI CASTG 7 cut(s) 484, 1297, 1400, 1781, 2336, 2523, 2539
Tth111I GACNNNGTC 1 cut(s) 57
Vha464I CTTAAG 1 cut(s) 1037
VneI GTGCAC 1 cut(s) 1383
VpaK11BI GGWCC 6 cut(s) 184, 628, 968, 1771, 1984, 2556
XapI RAATTY 3 cut(s) 974, 1049, 1272
XbaI TCTAGA 1 cut(s) 506
XceI RCATGY 2 cut(s) 639, 2396
XhoI CTCGAG 1 cut(s) 2253
XmaI CCCGGG 1 cut(s) 382
XmnI GAANNNNTTC 2 cut(s) 876, 1738
XspI CTAG 9 cut(s) 266, 435, 507, 569, 786, 990, 1617, 2084, 2117
ZrmI AGTACT 1 cut(s) 1340
Zsp2I ATGCAT 1 cut(s) 1831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.