Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005727

Physical Location & Seq

Genomic Coordinates Forward (+)

853524 .. 854958

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAAGTAAGGAAGGAGCTGGCTCAGATCTTGGCCAAAATTATATCTACAAGGAGGCAAAGGATGCAGTTAGAGGAGGAGGACCATAAGGATCTTCTGGGATCATTCATGGGTGACAAAGAAGGCCTCACTGACCAACAAATCGCTGACAACGTCATTGGGGTCATCTTCGCTGCCCGTGACACCACAGCCAGCGTCTTGACTTGGATTGTCAAGTACCTTGGGGAAAACCCAAGCGTTCTTCAAGCTGTCACTGCAGAGCAAGAAGCAATAATAAGGTCAAAAGAAGAAGAAGAAGAGGAGGAAAAAGTTCTGAGTTGGGCAGATACCAAAAAGATGCCCTTGACTTGTAGAGTGATTCAGGAGACACTAAGAGTTGCTTCCATTTTGTCTTTCACTTTCAGGGAAGCTGTGGAGGATGTTGAATATCAAGGTTATCTGATACCAAAAGGGTGGAAAGTTTTACCACTTTTCAGAAACATTCACCGCAGCCCAGAAATCTTTCCCGACCCTGACAAGTTTGATCCCTCCAGGTTTGAGATTGCTCCAAAACCCAATACCTACATGCCATTTGGCAGCGGGACCCACGCATGTCCAGGGAATGAATTAGCCAAGCTGGAGATTTTGGTCTTTTTACACCATCTAACAACAAAGTACAGGTGGTCTATGGTTGGTGCACAAAATGGCATACAGTATGGCCCTTTTGCTCTTCCCCAAAATGGCCTGCCCATTAGATTATCTCCTAAAACTATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0006066 GO:0006082 GO:0006629 GO:0006694 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009639 GO:0009687 GO:0009987 GO:0010035 GO:0010268 GO:0010295 GO:0010817 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0042221 GO:0042445 GO:0042446 GO:0042592 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046164 GO:0046345 GO:0046395 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072329 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

p450

Protein Analysis

253

Amino Acids

28.65

Weight (kDa)

6.02

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 224	4.6e-57	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19230 AT4G19230 AT5G45340 AT5G45340
fragaria_vesca	FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150 FvH4_5g25150
malus_domestica	MD06G1010900.v1.1 MD11G1240500.v1.1 MD16G1285900.v1.1
prunus_persica	Prupe.5G013100_v2.0.a1 Prupe.5G013100_v2.0.a1
pyrus_communis	pycom06g00890 pycom06g00900 pycom16g25780
rosa_chinensis	RchiOBHm_Chr7g0215351
rosa_laevigata	RLG00000002668
rosa_multiflora	Rmu_co8050526.1_g000001 Rmu_sc0000765.1_g000031
rosa_roxburghii	Rroxscaffold_3G00244250
rosa_rugosa	Rorug07G0152600
rosa_samantha	Rh7AG289200 Rh7BG281100 Rh7CG309000 Rh7DG292800
rosa_wichuraiana	Rw7G024720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	487, 579
AclWI	GGATC	3 cut(s)	99, 109, 518
AcoI	YGGCCR	1 cut(s)	33
AfaI	GTAC	2 cut(s)	218, 656
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	2 cut(s)	245, 425
AjnI	CCWGG	2 cut(s)	530, 595
AluBI	AGCT	4 cut(s)	19, 248, 410, 616
AluI	AGCT	4 cut(s)	19, 248, 410, 616
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	675
AlwI	GGATC	3 cut(s)	99, 109, 518
AoxI	GGCC	4 cut(s)	33, 124, 697, 721
ApaLI	GTGCAC	1 cut(s)	675
ApeKI	GCWGC	3 cut(s)	173, 489, 576
Asp700I	GAANNNNTTC	2 cut(s)	309, 501
AspS9I	GGNCC	3 cut(s)	82, 582, 698
AsuHPI	GGTGA	2 cut(s)	125, 476
AvaII	GGWCC	2 cut(s)	82, 582
BaeGI	GKGCMC	1 cut(s)	679
BalI	TGGCCA	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	679
BbvI	GCAGC	3 cut(s)	160, 501, 588
BccI	CCATC	1 cut(s)	648
BciT130I	CCWGG	2 cut(s)	532, 597
BcoDI	GTCTC	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	3 cut(s)	174, 490, 577
BlsI	GCNGC	3 cut(s)	175, 491, 578
Bme1390I	CCNGG	2 cut(s)	532, 597
Bme18I	GGWCC	2 cut(s)	82, 582
BmgT120I	GGNCC	3 cut(s)	82, 582, 698
BmiI	GGNNCC	2 cut(s)	583, 584
BmrFI	CCNGG	2 cut(s)	532, 597
BmsI	GCATC	2 cut(s)	54, 327
BpmI	CTGGAG	2 cut(s)	514, 638
BsaJI	CCNNGG	2 cut(s)	220, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
BseBI	CCWGG	2 cut(s)	532, 597
BseDI	CCNNGG	2 cut(s)	220, 596
BseGI	GGATG	2 cut(s)	69, 424
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	2 cut(s)	38, 305
BseRI	GAGGAG	3 cut(s)	89, 92, 314
BseSI	GKGCMC	1 cut(s)	679
BseXI	GCAGC	3 cut(s)	160, 501, 588
BshFI	GGCC	4 cut(s)	35, 126, 699, 723
BsiHKAI	GWGCWC	1 cut(s)	679
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	4 cut(s)	35, 126, 699, 723
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	4 cut(s)	27, 91, 101, 523
BspACI	CCGC	2 cut(s)	487, 579
BspANI	GGCC	4 cut(s)	35, 126, 699, 723
BspCNI	CTCAG	2 cut(s)	37, 306
BspLI	GGNNCC	2 cut(s)	583, 584
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	3 cut(s)	99, 109, 518
BspQI	GCTCTTC	1 cut(s)	714
BssECI	CCNNGG	2 cut(s)	220, 596
BssMI	GATC	4 cut(s)	27, 91, 101, 523
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	2 cut(s)	532, 597
Bst4CI	ACNGT	1 cut(s)	693
Bst6I	CTCTTC	2 cut(s)	291, 714
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	3 cut(s)	21, 193, 725
BstDEI	CTNAG	3 cut(s)	24, 314, 371
BstF5I	GGATG	2 cut(s)	69, 424
BstKTI	GATC	4 cut(s)	30, 94, 104, 526
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	4 cut(s)	27, 91, 101, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 254
BstNI	CCWGG	2 cut(s)	532, 597
BstNSI	RCATGY	2 cut(s)	568, 594
BstSCI	CCNGG	2 cut(s)	530, 595
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	679
BstV1I	GCAGC	3 cut(s)	160, 501, 588
BstX2I	RGATCY	2 cut(s)	27, 91
BstXI	CCANNNNNNTGG	1 cut(s)	453
BstYI	RGATCY	2 cut(s)	27, 91
BsuRI	GGCC	4 cut(s)	35, 126, 699, 723
BtsCI	GGATG	2 cut(s)	69, 424
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	129, 252
Cac8I	GCNNGC	3 cut(s)	21, 193, 725
Cfr13I	GGNCC	3 cut(s)	82, 582, 698
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	217, 655
CviAII	CATG	3 cut(s)	109, 565, 591
CviQI	GTAC	2 cut(s)	217, 655
DdeI	CTNAG	3 cut(s)	24, 314, 371
DpnI	GATC	4 cut(s)	29, 93, 103, 525
DpnII	GATC	4 cut(s)	27, 91, 101, 523
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	291, 714
EarI	CTCTTC	2 cut(s)	291, 714
Eco130I	CCWWGG	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	82, 582
EcoO109I	RGGNCCY	1 cut(s)	582
EcoRII	CCWGG	2 cut(s)	530, 595
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	112, 568, 594
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 364, 396
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	3 cut(s)	108, 564, 590
FauI	CCCGC	1 cut(s)	572
Fnu4HI	GCNGC	3 cut(s)	174, 490, 577
FokI	GGATG	2 cut(s)	76, 431
Fsp4HI	GCNGC	3 cut(s)	174, 490, 577
GluI	GCNGC	3 cut(s)	174, 490, 577
GsuI	CTGGAG	2 cut(s)	514, 638
HaeIII	GGCC	4 cut(s)	35, 126, 699, 723
HgaI	GACGC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	112, 568, 594
HinfI	GANTC	1 cut(s)	358
HphI	GGTGA	2 cut(s)	125, 476
Hpy166II	GTNNAC	1 cut(s)	677
Hpy188I	TCNGA	4 cut(s)	27, 315, 441, 476
Hpy188III	TCNNGA	3 cut(s)	199, 362, 506
Hpy8I	GTNNAC	1 cut(s)	677
HpyAV	CCTTC	2 cut(s)	7, 116
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	67, 257, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 254
HpyF3I	CTNAG	3 cut(s)	24, 314, 371
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	112, 568, 594
KflI	GGGWCCC	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	27, 91, 101, 523
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	2 cut(s)	16, 550
Lsp1109I	GCAGC	3 cut(s)	160, 501, 588
LweI	GCATC	2 cut(s)	54, 327
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	3 cut(s)	113, 179, 250
MalI	GATC	4 cut(s)	29, 93, 103, 525
MboI	GATC	4 cut(s)	27, 91, 101, 523
MboII	GAAGA	8 cut(s)	86, 160, 233, 299, 302, 305, 308, 701
MflI	RGATCY	2 cut(s)	27, 91
MhlI	GDGCHC	1 cut(s)	679
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	2 cut(s)	39, 605
MluNI	TGGCCA	1 cut(s)	35
MnlI	CCTC	9 cut(s)	48, 67, 70, 73, 137, 292, 295, 409, 538
Mox20I	TGGCCA	1 cut(s)	35
MroXI	GAANNNNTTC	2 cut(s)	309, 501
MscI	TGGCCA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	532, 597
MvaI	CCWGG	2 cut(s)	532, 597
MwoI	GCNNNNNNNGC	2 cut(s)	64, 254
NdeII	GATC	4 cut(s)	27, 91, 101, 523
NlaIII	CATG	3 cut(s)	112, 568, 594
NlaIV	GGNNCC	2 cut(s)	583, 584
NmuCI	GTSAC	3 cut(s)	113, 179, 250
NspI	RCATGY	2 cut(s)	568, 594
PceI	AGGCCT	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdmI	GAANNNNTTC	2 cut(s)	309, 501
PfeI	GAWTC	1 cut(s)	358
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	3 cut(s)	175, 491, 578
PpuMI	RGGWCCY	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	530, 595
PspGI	CCWGG	2 cut(s)	530, 595
PspN4I	GGNNCC	2 cut(s)	583, 584
PspPI	GGNCC	3 cut(s)	82, 582, 698
PspPPI	RGGWCCY	1 cut(s)	582
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	27, 91
PsyI	GACNNNGTC	1 cut(s)	152
RsaI	GTAC	2 cut(s)	218, 656
RsaNI	GTAC	2 cut(s)	217, 655
SapI	GCTCTTC	1 cut(s)	714
SatI	GCNGC	3 cut(s)	174, 490, 577
Sau3AI	GATC	4 cut(s)	27, 91, 101, 523
Sau96I	GGNCC	3 cut(s)	82, 582, 698
ScrFI	CCNGG	2 cut(s)	532, 597
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	2 cut(s)	54, 327
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	2 cut(s)	82, 582
Sse9I	AATT	2 cut(s)	39, 605
SseBI	AGGCCT	1 cut(s)	126
SsiI	CCGC	2 cut(s)	487, 579
StuI	AGGCCT	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	530, 595
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	693
TaiI	ACGT	1 cut(s)	156
TasI	AATT	2 cut(s)	39, 605
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	358
TscAI	CASTG	2 cut(s)	136, 259
TseFI	GTSAC	3 cut(s)	113, 179, 250
TseI	GCWGC	3 cut(s)	173, 489, 576
Tsp45I	GTSAC	3 cut(s)	113, 179, 250
TspDTI	ATGAA	3 cut(s)	17, 97, 618
TspRI	CASTG	2 cut(s)	136, 259
Tth111I	GACNNNGTC	1 cut(s)	152
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	2 cut(s)	82, 582
XceI	RCATGY	2 cut(s)	568, 594
XmnI	GAANNNNTTC	2 cut(s)	309, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.