pycom06g02750

Acetylornithine deacetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005490
Physical Location & Seq
Reverse (-)
3295138 .. 3298521
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02750.7

Sequence Viewer

Length: 1035 bp
ATGGCTTCCTCCTCCACCGACGTGAAGAAAATAGTAGGCGACCTGGACAAGGAGTCCTTCATGTCCCTTCTGTCCAAGCTTATTGGGGAGTCCAAGTACCTCCAGAACAACCCACCTGACCTGATCCCTCAAGAGGACCGAGCCGTCAAGCACGTGCTCGATTCCCTGCTGCCCCTCAGCACCACCACAGGCGGTGGTCCCTTGGTTATCAACCACGTGACCTACTTCCCCGGCAGAGGCAACGTCATTGTGGAGTACCCAGGAACTGTTCCTGGGAAGATCTTGTCCTTTGTTGGCTGTCACATGGACGTCGTCACTGCTAATCCAAAAGACTGGGAATTTGATCCATTCTCATTGAGCATCGAAGGAGATAAACTTCGTGGCCGTGGAACCACTGATTGCTTGGGTCATGTTGCACTTGTAACTGAGCTCATGAGAAGGCTGGCTGAGACAAAGCCAAAATTAAAGTCAACTGTGGTCGCAGTGTTTATAGCAAATGAAGAGAATTCTTCCATTTCAGGAGTTGGTGTGGATGCGCTCGTGAAGGATGGGCTACTCAGTAAGCTAAAGGATGGTCCTCTGTTTTGGATTGACACGGCAGATAAACAACCTTGCATCGGTACTGGTGGAATGATACCTTGGAAGCTTCATGTGACTGGGAAGCTTTTTCATAGTGGTTTAGCACACAAGGCTATAAACCCCTTGGAGCTAGCTATGGAAGCACTGAAAGAAATCCAGTTGCAGTTCTATAGAGATTTTCCTCCATACCCCAAGGAAGAGGCCTATGGATTTGCAACACCATCAACCATGAAGCCAACTCAATGGACTTATCCGGGTGGTGGAATAAACCAAATTCCAGCTGAATGCACAATTTCAGGAGATGTCAGGTTAACTCCCTTCTACAACGTTACGGATGTTATGGAAAAGCTTCAAGAATATGTGGATGATATTAACGAAAACATAGGAAAGGTAGAGTCACGAGGTCCAGTTTCAAAGTATGTCCTACCAGATGAAAACTTAAGGGGAAGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

345

Amino Acids

37.71

Weight (kDa)

5.47

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AatII GACGTC 1 cut(s) 312
AciI CCGC 1 cut(s) 192
AclI AACGTT 1 cut(s) 906
AclWI GGATC 2 cut(s) 118, 338
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 3 cut(s) 338, 505, 852
AcvI CACGTG 2 cut(s) 154, 217
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 3 cut(s) 98, 257, 622
AfiI CCNNNNNNNGG 5 cut(s) 49, 133, 236, 617, 839
AflII CTTAAG 1 cut(s) 1018
AgsI TTSAA 2 cut(s) 932, 993
AhdI GACNNNNNGTC 1 cut(s) 52
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 3 cut(s) 42, 259, 271
AjuI GAANNNNNNNTTGG 2 cut(s) 622, 654
AleI CACNNNNGTG 1 cut(s) 20
Alw21I GWGCWC 2 cut(s) 159, 432
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 2 cut(s) 118, 338
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 2 cut(s) 382, 780
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 3 cut(s) 338, 505, 852
ArsI GACNNNNNNTTYG 4 cut(s) 323, 355, 452, 484
Asp700I GAANNNNTTC 1 cut(s) 927
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 4 cut(s) 136, 197, 575, 983
AsuC2I CCSGG 2 cut(s) 231, 834
AsuNHI GCTAGC 1 cut(s) 709
AvaII GGWCC 4 cut(s) 136, 197, 575, 983
BanII GRGCYC 1 cut(s) 432
BauI CACGAG 2 cut(s) 539, 978
BbrPI CACGTG 2 cut(s) 154, 217
Bbv12I GWGCWC 2 cut(s) 159, 432
BbvCI CCTCAGC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 156
BccI CCATC 3 cut(s) 542, 566, 808
BceAI ACGGC 3 cut(s) 128, 369, 612
BciT130I CCWGG 3 cut(s) 44, 261, 273
BcnI CCSGG 2 cut(s) 231, 834
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 748
BfrI CTTAAG 1 cut(s) 1018
BglII AGATCT 1 cut(s) 279
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 5 cut(s) 44, 231, 261, 273, 834
Bme18I GGWCC 4 cut(s) 136, 197, 575, 983
BmeRI GACNNNNNGTC 1 cut(s) 52
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 4 cut(s) 136, 197, 575, 983
BmiI GGNNCC 2 cut(s) 199, 391
BmrFI CCNGG 5 cut(s) 44, 231, 261, 273, 834
BmrI ACTGGG 2 cut(s) 343, 666
BmsI GCATC 3 cut(s) 369, 523, 624
BmtI GCTAGC 1 cut(s) 713
BmuI ACTGGG 2 cut(s) 343, 666
BpmI CTGGAG 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 2 cut(s) 231, 834
BsaAI YACGTR 2 cut(s) 154, 217
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 8 cut(s) 201, 229, 259, 272, 385, 638, 702, 771
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 513, 543
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 133, 236, 617, 839
Bse1I ACTGG 5 cut(s) 338, 628, 661, 736, 986
BseBI CCWGG 3 cut(s) 44, 261, 273
BseDI CCNNGG 8 cut(s) 201, 229, 259, 272, 385, 638, 702, 771
BseGI GGATG 5 cut(s) 538, 553, 577, 919, 949
BseLI CCNNNNNNNGG 5 cut(s) 49, 133, 236, 617, 839
BseMII CTCAG 4 cut(s) 190, 417, 438, 571
BseNI ACTGG 5 cut(s) 338, 628, 661, 736, 986
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 2 cut(s) 384, 782
BsiHKAI GWGCWC 2 cut(s) 159, 432
BsiSI CCGG 2 cut(s) 231, 833
BslFI GGGAC 2 cut(s) 49, 183
BslI CCNNNNNNNGG 5 cut(s) 49, 133, 236, 617, 839
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 2 cut(s) 49, 183
BsmI GAATGC 1 cut(s) 869
BsnI GGCC 2 cut(s) 384, 782
Bsp1286I GDGCHC 2 cut(s) 159, 432
Bsp143I GATC 3 cut(s) 123, 279, 343
BspACI CCGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 384, 782
BspCNI CTCAG 4 cut(s) 189, 418, 439, 570
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 2 cut(s) 199, 391
BspOI GCTAGC 1 cut(s) 713
BspPI GGATC 2 cut(s) 118, 338
BspTI CTTAAG 1 cut(s) 1018
BsrI ACTGG 5 cut(s) 338, 628, 661, 736, 986
BssECI CCNNGG 8 cut(s) 201, 229, 259, 272, 385, 638, 702, 771
BssMI GATC 3 cut(s) 123, 279, 343
BssNI GRCGYC 1 cut(s) 309
BssSI CACGAG 2 cut(s) 539, 978
BssT1I CCWWGG 4 cut(s) 201, 638, 702, 771
Bst2BI CACGAG 2 cut(s) 539, 978
Bst2UI CCWGG 3 cut(s) 44, 261, 273
Bst4CI ACNGT 2 cut(s) 268, 475
Bst6I CTCTTC 2 cut(s) 495, 771
BstACI GRCGYC 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 1018
BstBAI YACGTR 2 cut(s) 154, 217
BstC8I GCNNGC 2 cut(s) 444, 711
BstDEI CTNAG 4 cut(s) 176, 426, 447, 557
BstDSI CCRYGG 1 cut(s) 385
BstENI CCTNNNNNAGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 538, 553, 577, 919, 949
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 3 cut(s) 126, 282, 346
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 3 cut(s) 123, 279, 343
BstMWI GCNNNNNNNGC 2 cut(s) 689, 719
BstNI CCWGG 3 cut(s) 44, 261, 273
BstSCI CCNGG 5 cut(s) 42, 229, 259, 271, 832
BstSFI CTRYAG 1 cut(s) 748
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 279
BstXI CCANNNNNNTGG 2 cut(s) 333, 822
BstYI RGATCY 1 cut(s) 279
BsuRI GGCC 2 cut(s) 384, 782
BtgI CCRYGG 1 cut(s) 385
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 5 cut(s) 538, 553, 577, 919, 949
BtsI GCAGTG 2 cut(s) 315, 489
BtsIMutI CAGTG 4 cut(s) 315, 393, 489, 722
Cac8I GCNNGC 2 cut(s) 444, 711
CaiI CAGNNNCTG 1 cut(s) 266
CciI TCATGA 1 cut(s) 432
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 4 cut(s) 136, 197, 575, 983
Csp6I GTAC 3 cut(s) 97, 256, 621
CviAII CATG 6 cut(s) 61, 304, 410, 433, 650, 808
CviQI GTAC 3 cut(s) 97, 256, 621
DdeI CTNAG 4 cut(s) 176, 426, 447, 557
DpnI GATC 3 cut(s) 125, 281, 345
DpnII GATC 3 cut(s) 123, 279, 343
DrdI GACNNNNNNGTC 1 cut(s) 143
DriI GACNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 495, 771
Eam1105I GACNNNNNGTC 1 cut(s) 52
EarI CTCTTC 2 cut(s) 495, 771
Ecl136II GAGCTC 1 cut(s) 430
Eco130I CCWWGG 4 cut(s) 201, 638, 702, 771
Eco147I AGGCCT 1 cut(s) 782
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 4 cut(s) 136, 197, 575, 983
Eco53kI GAGCTC 1 cut(s) 430
Eco72I CACGTG 2 cut(s) 154, 217
EcoICRI GAGCTC 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 3 cut(s) 42, 259, 271
EcoT14I CCWWGG 4 cut(s) 201, 638, 702, 771
EcoT38I GRGCYC 1 cut(s) 432
ErhI CCWWGG 4 cut(s) 201, 638, 702, 771
FaeI CATG 6 cut(s) 64, 307, 413, 436, 653, 811
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 2 cut(s) 49, 183
FatI CATG 6 cut(s) 60, 303, 409, 432, 649, 807
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 5 cut(s) 545, 560, 584, 926, 956
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 710
GlaI GCGC 1 cut(s) 537
GluI GCNGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 2 cut(s) 384, 782
HapII CCGG 2 cut(s) 231, 833
HhaI GCGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 6 cut(s) 64, 307, 413, 436, 653, 811
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HincII GTYRAC 2 cut(s) 471, 891
HindII GTYRAC 2 cut(s) 471, 891
HindIII AAGCTT 4 cut(s) 77, 644, 662, 926
HinfI GANTC 4 cut(s) 53, 89, 161, 974
HpaI GTTAAC 1 cut(s) 891
HpaII CCGG 2 cut(s) 231, 833
Hpy166II GTNNAC 2 cut(s) 471, 891
Hpy188III TCNNGA 8 cut(s) 103, 131, 433, 519, 541, 876, 932, 978
Hpy8I GTNNAC 2 cut(s) 471, 891
Hpy99I CGWCG 2 cut(s) 23, 314
HpyAV CCTTC 6 cut(s) 67, 77, 359, 432, 538, 907
HpyCH4III ACNGT 2 cut(s) 268, 475
HpyCH4IV ACGT 6 cut(s) 21, 153, 216, 243, 309, 906
HpyCH4V TGCA 5 cut(s) 416, 615, 742, 794, 867
HpyF10VI GCNNNNNNNGC 2 cut(s) 689, 719
HpyF3I CTNAG 4 cut(s) 176, 426, 447, 557
HpySE526I ACGT 6 cut(s) 21, 153, 216, 243, 309, 906
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 6 cut(s) 64, 307, 413, 436, 653, 811
HspAI GCGC 1 cut(s) 536
KspAI GTTAAC 1 cut(s) 891
Kzo9I GATC 3 cut(s) 123, 279, 343
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 3 cut(s) 369, 523, 624
MaeI CTAG 1 cut(s) 710
MaeII ACGT 6 cut(s) 21, 153, 216, 243, 309, 906
MaeIII GTNAC 7 cut(s) 217, 299, 313, 421, 652, 907, 975
MalI GATC 3 cut(s) 125, 281, 345
MboI GATC 3 cut(s) 123, 279, 343
MboII GAAGA 5 cut(s) 37, 289, 501, 512, 788
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 2 cut(s) 159, 432
MluCI AATT 5 cut(s) 338, 461, 505, 852, 870
MlyI GAGTC 3 cut(s) 62, 98, 983
MroXI GAANNNNTTC 1 cut(s) 927
MseI TTAA 4 cut(s) 464, 890, 951, 1019
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 860
MspCI CTTAAG 1 cut(s) 1018
MspI CCGG 2 cut(s) 231, 833
MspR9I CCNGG 5 cut(s) 44, 231, 261, 273, 834
Mva1269I GAATGC 1 cut(s) 869
MvaI CCWGG 3 cut(s) 44, 261, 273
MwoI GCNNNNNNNGC 2 cut(s) 689, 719
NciI CCSGG 2 cut(s) 231, 834
NdeII GATC 3 cut(s) 123, 279, 343
NheI GCTAGC 1 cut(s) 709
NlaIII CATG 6 cut(s) 64, 307, 413, 436, 653, 811
NlaIV GGNNCC 2 cut(s) 199, 391
NmuCI GTSAC 5 cut(s) 217, 299, 313, 652, 975
OliI CACNNNNGTG 1 cut(s) 20
PagI TCATGA 1 cut(s) 432
PceI AGGCCT 1 cut(s) 782
PctI GAATGC 1 cut(s) 869
PdmI GAANNNNTTC 1 cut(s) 927
PfeI GAWTC 1 cut(s) 161
PflFI GACNNNGTC 1 cut(s) 311
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 3 cut(s) 61, 97, 982
PmaCI CACGTG 2 cut(s) 154, 217
PmlI CACGTG 2 cut(s) 154, 217
PpsI GAGTC 3 cut(s) 61, 97, 982
Ppu21I YACGTR 2 cut(s) 154, 217
Psp124BI GAGCTC 1 cut(s) 432
Psp1406I AACGTT 1 cut(s) 906
Psp6I CCWGG 3 cut(s) 42, 259, 271
PspCI CACGTG 2 cut(s) 154, 217
PspGI CCWGG 3 cut(s) 42, 259, 271
PspN4I GGNNCC 2 cut(s) 199, 391
PspPI GGNCC 4 cut(s) 136, 197, 575, 983
PstNI CAGNNNCTG 1 cut(s) 266
PsuI RGATCY 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 860
RsaI GTAC 3 cut(s) 98, 257, 622
RsaNI GTAC 3 cut(s) 97, 256, 621
RseI CAYNNNNRTG 1 cut(s) 20
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 4 cut(s) 464, 890, 951, 1019
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 3 cut(s) 123, 279, 343
Sau96I GGNCC 4 cut(s) 136, 197, 575, 983
SchI GAGTC 3 cut(s) 62, 98, 983
ScrFI CCNGG 5 cut(s) 44, 231, 261, 273, 834
SduI GDGCHC 2 cut(s) 159, 432
SfaNI GCATC 3 cut(s) 369, 523, 624
SfcI CTRYAG 1 cut(s) 748
SinI GGWCC 4 cut(s) 136, 197, 575, 983
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 129, 1018
SmoI CTYRAG 2 cut(s) 129, 1018
Sse9I AATT 5 cut(s) 338, 461, 505, 852, 870
SseBI AGGCCT 1 cut(s) 782
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 710
SstI GAGCTC 1 cut(s) 432
StuI AGGCCT 1 cut(s) 782
StyD4I CCNGG 5 cut(s) 42, 229, 259, 271, 832
StyI CCWWGG 4 cut(s) 201, 638, 702, 771
TaaI ACNGT 2 cut(s) 268, 475
TaiI ACGT 6 cut(s) 24, 156, 219, 246, 312, 909
TaqI TCGA 2 cut(s) 159, 363
TaqII GACCGA 1 cut(s) 153
TasI AATT 5 cut(s) 338, 461, 505, 852, 870
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 4 cut(s) 464, 890, 951, 1019
Tru9I TTAA 4 cut(s) 464, 890, 951, 1019
TscAI CASTG 4 cut(s) 322, 400, 489, 729
TseFI GTSAC 5 cut(s) 217, 299, 313, 652, 975
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 5 cut(s) 217, 299, 313, 652, 975
TspDTI ATGAA 6 cut(s) 49, 513, 638, 659, 824, 1026
TspGWI ACGGA 1 cut(s) 926
TspRI CASTG 4 cut(s) 322, 400, 489, 729
Tth111I GACNNNGTC 1 cut(s) 311
Vha464I CTTAAG 1 cut(s) 1018
VpaK11BI GGWCC 4 cut(s) 136, 197, 575, 983
XagI CCTNNNNNAGG 1 cut(s) 47
XapI RAATTY 3 cut(s) 338, 505, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 1 cut(s) 710
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.