Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017361.1

Orthogroup ID

OG0005490

Physical Location & Seq

Genomic Coordinates Forward (+)

4145 .. 5312

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017361.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggcttcctccaccaccgacgacctcaagaaaaccctcggcgacctcgacaaggactccttcatatccctcctctccaagctcatcggcgaggccaagttcgtccagaacaacccccctgacctcattcctcaggaggaccgagtcgtcaagcacgtgctcgcctctctcttgccccttagcaccaccaccggcggcggacccctcctcatcaatcacgtgacttaccaccccggcaggggcaacgtgattgtggagtacccggggactgtgcccgggaaagtgctgtcctttgtggggtgtcacatggacgtcgtcactgccaatcctgatgactgggaatttgatcccttctccttgagcattgatggggacaaactgcgtggccgaggcaccactgattgcttagggcatgttgcacttgtaactgagctcatgagaaggctggcgcagacaaaaccaaaattgaagtcaactgtggtagttgtcttgatagcaaatgaagagaattcttccattgcaggagttggtgtggatgcacttgtgaaggatgggctactcaacaagctaaaggatggtcctttgttttggatagatacagcagataaacaaccatgcattggtactggtggatcgataccttggaagcttcatgtgactgggaagctttttcacagtggtttaccgcacaaggtacaccactttgttgcatttggtcatttgagcacttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

244

Amino Acids

26.25

Weight (kDa)

6.58

Isoelectric Point (pI)

16.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17830 AT4G17830
fragaria_vesca	FvH4_5g21890
malus_domestica	MD06G1033100.v1.1 MD16G1275900.v1.1
prunus_persica	Prupe.5G038300_v2.0.a1
pyrus_communis	pycom06g02740 pycom06g02750 pycom16g24540
rosa_chinensis	RchiOBHm_Chr7g0209441
rosa_laevigata	RLG00000003136
rosa_multiflora	Rmu_sc0015095.1_g000002 Rmu_sc0017361.1_g000002
rosa_roxburghii	Rroxscaffold_174G00435090 Rroxscaffold_3G00249460
rosa_rugosa	Rorug07G0112600 Rorug07G0112700 Rorug07G0112800
rosa_samantha	Rh4AG088700 Rh4CG096800 Rh5CG212700 Rh6CG141200 Rh7AG246800 Rh7BG241800 Rh7CG262400 Rh7CG389200 Rh7DG253000
rosa_wichuraiana	Rw3G003940 Rw7G020860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AatII	GACGTC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	620
AciI	CCGC	3 cut(s)	195, 198, 686
AclWI	GGATC	2 cut(s)	341, 640
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	341, 508
AcvI	CACGTG	2 cut(s)	157, 220
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	3 cut(s)	260, 625, 696
AfiI	CCNNNNNNNGG	5 cut(s)	52, 238, 239, 297, 620
AgsI	TTSAA	1 cut(s)	469
AluBI	AGCT	5 cut(s)	82, 433, 568, 649, 667
AluI	AGCT	5 cut(s)	82, 433, 568, 649, 667
Alw21I	GWGCWC	3 cut(s)	162, 435, 728
AlwI	GGATC	2 cut(s)	341, 640
Ama87I	CYCGRG	2 cut(s)	262, 275
AoxI	GGCC	2 cut(s)	93, 385
ApoI	RAATTY	2 cut(s)	341, 508
ArsI	GACNNNNNNTTYG	4 cut(s)	326, 358, 455, 487
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	3 cut(s)	139, 200, 578
AsuC2I	CCSGG	5 cut(s)	234, 263, 264, 276, 277
AvaI	CYCGRG	2 cut(s)	262, 275
AvaII	GGWCC	3 cut(s)	139, 200, 578
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	435
BbrPI	CACGTG	2 cut(s)	157, 220
Bbv12I	GWGCWC	3 cut(s)	162, 435, 728
BccI	CCATC	3 cut(s)	362, 545, 569
BcnI	CCSGG	5 cut(s)	234, 263, 264, 276, 277
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	5 cut(s)	234, 263, 264, 276, 277
Bme18I	GGWCC	3 cut(s)	139, 200, 578
BmeT110I	CYCGRG	2 cut(s)	262, 275
BmgT120I	GGNCC	3 cut(s)	139, 200, 578
BmiI	GGNNCC	2 cut(s)	202, 394
BmrFI	CCNGG	5 cut(s)	234, 263, 264, 276, 277
BmrI	ACTGGG	2 cut(s)	346, 669
BmsI	GCATC	1 cut(s)	526
BmuI	ACTGGG	2 cut(s)	346, 669
Bpu10I	CCTNAGC	2 cut(s)	179, 406
BpuEI	CTTGAG	2 cut(s)	11, 379
BpuMI	CCSGG	5 cut(s)	234, 263, 264, 276, 277
Bsa29I	ATCGAT	1 cut(s)	635
BsaAI	YACGTR	2 cut(s)	157, 220
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	7 cut(s)	37, 232, 262, 263, 275, 388, 641
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 516, 546
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 238, 239, 297, 620
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	3 cut(s)	341, 631, 664
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	516
BseCI	ATCGAT	1 cut(s)	635
BseDI	CCNNGG	7 cut(s)	37, 232, 262, 263, 275, 388, 641
BseGI	GGATG	3 cut(s)	541, 556, 580
BseLI	CCNNNNNNNGG	5 cut(s)	52, 238, 239, 297, 620
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	146, 420
BseNI	ACTGG	3 cut(s)	341, 631, 664
BseRI	GAGGAG	2 cut(s)	62, 197
BseSI	GKGCMC	1 cut(s)	276
BshFI	GGCC	2 cut(s)	95, 387
BshNI	GGYRCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	635
BsiHKAI	GWGCWC	3 cut(s)	162, 435, 728
BsiHKCI	CYCGRG	2 cut(s)	262, 275
BsiSI	CCGG	4 cut(s)	192, 234, 263, 276
BslFI	GGGAC	2 cut(s)	280, 386
BslI	CCNNNNNNNGG	5 cut(s)	52, 238, 239, 297, 620
BsmFI	GGGAC	2 cut(s)	280, 386
BsnI	GGCC	2 cut(s)	95, 387
BsoBI	CYCGRG	2 cut(s)	262, 275
Bsp1286I	GDGCHC	4 cut(s)	162, 276, 435, 728
Bsp143I	GATC	2 cut(s)	346, 632
BspACI	CCGC	3 cut(s)	195, 198, 686
BspANI	GGCC	2 cut(s)	95, 387
BspCNI	CTCAG	2 cut(s)	145, 421
BspDI	ATCGAT	1 cut(s)	635
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	202, 394
BspPI	GGATC	2 cut(s)	341, 640
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	516
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	341, 631, 664
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	7 cut(s)	37, 232, 262, 263, 275, 388, 641
BssMI	GATC	2 cut(s)	346, 632
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	641
Bst4CI	ACNGT	3 cut(s)	271, 478, 677
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	312
BstBAI	YACGTR	2 cut(s)	157, 220
BstC8I	GCNNGC	2 cut(s)	162, 447
BstDEI	CTNAG	4 cut(s)	132, 179, 406, 429
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	541, 556, 580
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	2 cut(s)	349, 635
BstMBI	GATC	2 cut(s)	346, 632
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	5 cut(s)	232, 261, 262, 274, 275
BstSLI	GKGCMC	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	635
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	95, 387
BsuTUI	ATCGAT	1 cut(s)	635
BtsCI	GGATG	3 cut(s)	541, 556, 580
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	3 cut(s)	318, 396, 682
Cac8I	GCNNGC	2 cut(s)	162, 447
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	139, 200, 578
Cfr9I	CCCGGG	2 cut(s)	262, 275
ClaI	ATCGAT	1 cut(s)	635
Csp6I	GTAC	3 cut(s)	259, 624, 695
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviAII	CATG	5 cut(s)	307, 413, 436, 615, 653
CviQI	GTAC	3 cut(s)	259, 624, 695
DdeI	CTNAG	4 cut(s)	132, 179, 406, 429
DpnI	GATC	2 cut(s)	348, 634
DpnII	GATC	2 cut(s)	346, 632
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	385
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	641
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	3 cut(s)	139, 200, 578
Eco53kI	GAGCTC	1 cut(s)	433
Eco72I	CACGTG	2 cut(s)	157, 220
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	2 cut(s)	262, 275
EcoICRI	GAGCTC	1 cut(s)	433
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	641
EcoT22I	ATGCAT	1 cut(s)	620
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	641
FaeI	CATG	5 cut(s)	310, 416, 439, 618, 656
FaiI	YATR	6 cut(s)	65, 308, 414, 437, 616, 654
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	2 cut(s)	280, 386
FatI	CATG	5 cut(s)	306, 412, 435, 614, 652
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	3 cut(s)	548, 563, 587
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	196
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	95, 387
HapII	CCGG	4 cut(s)	192, 234, 263, 276
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	5 cut(s)	310, 416, 439, 618, 656
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HindIII	AAGCTT	2 cut(s)	647, 665
HinfI	GANTC	2 cut(s)	56, 144
HpaII	CCGG	4 cut(s)	192, 234, 263, 276
Hpy166II	GTNNAC	3 cut(s)	474, 683, 697
Hpy188III	TCNNGA	6 cut(s)	28, 106, 134, 329, 436, 490
Hpy8I	GTNNAC	3 cut(s)	474, 683, 697
Hpy99I	CGWCG	2 cut(s)	23, 317
HpyAV	CCTTC	4 cut(s)	70, 361, 435, 541
HpyCH4III	ACNGT	3 cut(s)	271, 478, 677
HpyCH4IV	ACGT	4 cut(s)	156, 219, 246, 312
HpyCH4V	TGCA	5 cut(s)	419, 521, 539, 618, 710
HpyF3I	CTNAG	4 cut(s)	132, 179, 406, 429
HpySE526I	ACGT	4 cut(s)	156, 219, 246, 312
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	310, 416, 439, 618, 656
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	346, 632
LweI	GCATC	1 cut(s)	526
MaeII	ACGT	4 cut(s)	156, 219, 246, 312
MaeIII	GTNAC	5 cut(s)	220, 302, 316, 424, 655
MalI	GATC	2 cut(s)	348, 634
MboI	GATC	2 cut(s)	346, 632
MboII	GAAGA	2 cut(s)	504, 515
MhlI	GDGCHC	4 cut(s)	162, 276, 435, 728
MluCI	AATT	3 cut(s)	341, 464, 508
MlyI	GAGTC	2 cut(s)	50, 153
Mph1103I	ATGCAT	1 cut(s)	620
MspI	CCGG	4 cut(s)	192, 234, 263, 276
MspR9I	CCNGG	5 cut(s)	234, 263, 264, 276, 277
NciI	CCSGG	5 cut(s)	234, 263, 264, 276, 277
NdeII	GATC	2 cut(s)	346, 632
NlaIII	CATG	5 cut(s)	310, 416, 439, 618, 656
NlaIV	GGNNCC	2 cut(s)	202, 394
NmeAIII	GCCGAG	2 cut(s)	18, 413
NmuCI	GTSAC	4 cut(s)	220, 302, 316, 655
NsiI	ATGCAT	1 cut(s)	620
NspI	RCATGY	1 cut(s)	416
PagI	TCATGA	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 153
PflFI	GACNNNGTC	2 cut(s)	143, 314
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	2 cut(s)	50, 152
PmaCI	CACGTG	2 cut(s)	157, 220
PmlI	CACGTG	2 cut(s)	157, 220
PpsI	GAGTC	2 cut(s)	50, 152
Ppu21I	YACGTR	2 cut(s)	157, 220
Psp124BI	GAGCTC	1 cut(s)	435
PspCI	CACGTG	2 cut(s)	157, 220
PspN4I	GGNNCC	2 cut(s)	202, 394
PspPI	GGNCC	3 cut(s)	139, 200, 578
PsyI	GACNNNGTC	2 cut(s)	143, 314
RsaI	GTAC	3 cut(s)	260, 625, 696
RsaNI	GTAC	3 cut(s)	259, 624, 695
SacI	GAGCTC	1 cut(s)	435
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	346, 632
Sau96I	GGNCC	3 cut(s)	139, 200, 578
SchI	GAGTC	2 cut(s)	50, 153
ScrFI	CCNGG	5 cut(s)	234, 263, 264, 276, 277
SduI	GDGCHC	4 cut(s)	162, 276, 435, 728
SfaNI	GCATC	1 cut(s)	526
SgrAI	CRCCGGYG	1 cut(s)	191
SinI	GGWCC	3 cut(s)	139, 200, 578
SmaI	CCCGGG	2 cut(s)	264, 277
SmlI	CTYRAG	2 cut(s)	26, 358
SmoI	CTYRAG	2 cut(s)	26, 358
Sse9I	AATT	3 cut(s)	341, 464, 508
SsiI	CCGC	3 cut(s)	195, 198, 686
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	5 cut(s)	232, 261, 262, 274, 275
StyI	CCWWGG	1 cut(s)	641
TaaI	ACNGT	3 cut(s)	271, 478, 677
TaiI	ACGT	4 cut(s)	159, 222, 249, 315
TaqI	TCGA	2 cut(s)	48, 635
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	341, 464, 508
TauI	GCSGC	1 cut(s)	198
TscAI	CASTG	3 cut(s)	325, 403, 682
TseFI	GTSAC	4 cut(s)	220, 302, 316, 655
Tsp45I	GTSAC	4 cut(s)	220, 302, 316, 655
TspDTI	ATGAA	3 cut(s)	52, 516, 641
TspMI	CCCGGG	2 cut(s)	262, 275
TspRI	CASTG	3 cut(s)	325, 403, 682
Tth111I	GACNNNGTC	2 cut(s)	143, 314
Van91I	CCANNNNNTGG	1 cut(s)	620
VpaK11BI	GGWCC	3 cut(s)	139, 200, 578
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	2 cut(s)	341, 508
XceI	RCATGY	1 cut(s)	416
XmaI	CCCGGG	2 cut(s)	262, 275
ZraI	GACGTC	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.