Rw3G003940

Acetylornithine deacetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0005490
Physical Location & Seq
Forward (+)
3409073 .. 3409462
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003940.1

Sequence Viewer

Length: 390 bp
ATGGCTTCCTCCACCACCGACGACCTTAAGAAAACCCTCGGCGACCTCGACAAGGACTCCTCCATATCCCTCCTCTCCAAGCTCATCGGCGAGGCCAAGTTCGTCCAGAACAACCCCCTGACCTCATTCCTCAGGAGGACCGAGTCGTCAAGCATGTGCTCGCCTCTCTTGCCCCTTAGTACCACCACTGGCGGCGGACCTTTCCTCATCAATCACGTGACTTACCACCCCGGCAGGGGCAACGTGATTGTGGAGTACCCAGGGACTGTGCCCGGGAAAGTGTTGTCCTTTGTGGGGTGCCACATGGACGCCGTCACTGCCAATCCGGATGATTGGGTTTGTTCCTCTGGTTCCATTGTTTCTAGTCTGAAAGTTTGTTTCTTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

129

Amino Acids

13.73

Weight (kDa)

6.24

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 297
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 2 cut(s) 192, 195
AcvI CACGTG 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 2 cut(s) 181, 257
AfiI CCNNNNNNNGG 4 cut(s) 52, 235, 236, 294
AflII CTTAAG 1 cut(s) 26
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw21I GWGCWC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 138, 197
AsuC2I CCSGG 3 cut(s) 231, 273, 274
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 2 cut(s) 138, 197
AxyI CCTNAGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 273
BanI GGYRCC 1 cut(s) 297
BbrPI CACGTG 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 161
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 261
BcnI CCSGG 3 cut(s) 231, 273, 274
BfaI CTAG 1 cut(s) 363
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
Bme1390I CCNGG 4 cut(s) 231, 261, 273, 274
Bme18I GGWCC 2 cut(s) 138, 197
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 138, 197
BmiI GGNNCC 2 cut(s) 299, 352
BmrFI CCNGG 4 cut(s) 231, 261, 273, 274
BpuMI CCSGG 3 cut(s) 231, 273, 274
BsaAI YACGTR 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 5 cut(s) 37, 229, 259, 260, 272
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 235, 236, 294
Bse1I ACTGG 1 cut(s) 193
Bse21I CCTNAGG 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 5 cut(s) 37, 229, 259, 260, 272
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 4 cut(s) 52, 235, 236, 294
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 49, 62
BseSI GKGCMC 1 cut(s) 273
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 3 cut(s) 231, 273, 326
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 4 cut(s) 52, 235, 236, 294
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 161, 273
Bsp13I TCCGGA 1 cut(s) 325
BspACI CCGC 2 cut(s) 192, 195
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 299, 352
BspT107I GGYRCC 1 cut(s) 297
BspTI CTTAAG 1 cut(s) 26
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 5 cut(s) 37, 229, 259, 260, 272
BssNI GRCGYC 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 131, 176
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 334
BstMWI GCNNNNNNNGC 2 cut(s) 169, 317
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 157
BstSCI CCNGG 4 cut(s) 229, 259, 271, 272
BstSLI GKGCMC 1 cut(s) 273
Bsu36I CCTNAGG 1 cut(s) 131
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 334
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 186, 315
Cac8I GCNNGC 1 cut(s) 161
CaiI CAGNNNCTG 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 138, 197
Cfr9I CCCGGG 1 cut(s) 272
CseI GACGC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 180, 256
CviAII CATG 2 cut(s) 154, 304
CviJI RGCY 3 cut(s) 5, 82, 95
CviKI_1 RGCY 3 cut(s) 5, 82, 95
CviQI GTAC 2 cut(s) 180, 256
DdeI CTNAG 2 cut(s) 131, 176
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
EciI GGCGGA 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 138, 197
Eco72I CACGTG 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 272
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 259
FaeI CATG 2 cut(s) 157, 307
FaiI YATR 3 cut(s) 65, 155, 305
FaqI GGGAC 1 cut(s) 277
FatI CATG 2 cut(s) 153, 303
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 193
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 193
HaeIII GGCC 1 cut(s) 95
HapII CCGG 3 cut(s) 231, 273, 326
HgaI GACGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 2 cut(s) 157, 307
HinfI GANTC 2 cut(s) 56, 143
HpaII CCGG 3 cut(s) 231, 273, 326
Hpy188I TCNGA 1 cut(s) 369
Hpy188III TCNNGA 3 cut(s) 106, 133, 326
Hpy99I CGWCG 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 2 cut(s) 216, 243
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 317
HpyF3I CTNAG 2 cut(s) 131, 176
HpySE526I ACGT 2 cut(s) 216, 243
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 2 cut(s) 157, 307
Kpn2I TCCGGA 1 cut(s) 325
MaeI CTAG 1 cut(s) 363
MaeII ACGT 2 cut(s) 216, 243
MaeIII GTNAC 2 cut(s) 217, 313
MhlI GDGCHC 2 cut(s) 161, 273
MluCI AATT 1 cut(s) 385
MlyI GAGTC 2 cut(s) 50, 152
MroI TCCGGA 1 cut(s) 325
MseI TTAA 2 cut(s) 27, 384
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 3 cut(s) 231, 273, 326
MspR9I CCNGG 4 cut(s) 231, 261, 273, 274
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 169, 317
NciI CCSGG 3 cut(s) 231, 273, 274
NlaIII CATG 2 cut(s) 157, 307
NlaIV GGNNCC 2 cut(s) 299, 352
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 217, 313
NspI RCATGY 1 cut(s) 157
PasI CCCWGGG 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PflFI GACNNNGTC 2 cut(s) 142, 311
PkrI GCNGC 1 cut(s) 194
PleI GAGTC 2 cut(s) 50, 151
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
PpsI GAGTC 2 cut(s) 50, 151
Ppu21I YACGTR 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 259
PspCI CACGTG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 299, 352
PspPI GGNCC 2 cut(s) 138, 197
PstNI CAGNNNCTG 1 cut(s) 266
PsyI GACNNNGTC 2 cut(s) 142, 311
RsaI GTAC 2 cut(s) 181, 257
RsaNI GTAC 2 cut(s) 180, 256
SaqAI TTAA 2 cut(s) 27, 384
SatI GCNGC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 138, 197
SchI GAGTC 2 cut(s) 50, 152
ScrFI CCNGG 4 cut(s) 231, 261, 273, 274
SduI GDGCHC 2 cut(s) 161, 273
SetI ASST 7 cut(s) 27, 48, 84, 125, 202, 219, 246
SinI GGWCC 2 cut(s) 138, 197
SmaI CCCGGG 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 385
SsiI CCGC 2 cut(s) 192, 195
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 4 cut(s) 229, 259, 271, 272
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 2 cut(s) 219, 246
TaqI TCGA 1 cut(s) 48
TaqII GACCGA 1 cut(s) 155
TasI AATT 1 cut(s) 385
TauI GCSGC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 27, 384
Tru9I TTAA 2 cut(s) 27, 384
TscAI CASTG 2 cut(s) 193, 322
TseFI GTSAC 2 cut(s) 217, 313
Tsp45I GTSAC 2 cut(s) 217, 313
TspMI CCCGGG 1 cut(s) 272
TspRI CASTG 2 cut(s) 193, 322
Tth111I GACNNNGTC 2 cut(s) 142, 311
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 2 cut(s) 138, 197
XagI CCTNNNNNAGG 1 cut(s) 50
XceI RCATGY 1 cut(s) 157
XmaI CCCGGG 1 cut(s) 272
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.