Rroxscaffold_174G00435090

Acetylornithine deacetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000174
OG0005490
Physical Location & Seq
Forward (+)
19774 .. 20310
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_174G00435090.1

Sequence Viewer

Length: 537 bp
ATGAGGACCTGTCACCGCTGCGCCGCCGTCGCCGCACCCATTTCCTTTCTCGATCTCCGGCGAAACCCTTTTTCTTCCTCATGGTCCTCTTCTTCCTCATCCTCGTCCTCATCGATCACCAAAACCCCCAAAGATTTCGACTTTCCACAACCATGGCTTCCTCCACCATCGACGACCTCAAGAAAACCCTCGGCGACCTCGACAAGGACTCCTCCATATCCTCCTCTCCAAGCTCATCGGCGAGGCCAAGTTCATCCGAACAACCCCCACGACCTCATTCCTCGGGAGGACCGAGTCGTCAAGCACGTGCCCGCCTCTCTTGCCCCTAGCACCACCACCGGCGGCGGACCTTTCCTCATCAATCACGTGACTTACCACCCGGCGGGGGCGCGTGATTGTGGAGTACCCGAGGACGTGCCCGGGAAAGTGTTGTCCTTTGTGGGGTGCCACATGGACGCCGTCACTTTGCCATCCGATGATTGGGTTTGTTCCTACGGTTCCATTGTTTCTAGTACGAAAGTTTGTTTCTTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

178

Amino Acids

19.25

Weight (kDa)

9.04

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 444
AccII CGCG 1 cut(s) 391
AciI CCGC 7 cut(s) 16, 24, 33, 312, 342, 345, 383
AcvI CACGTG 2 cut(s) 307, 367
AcyI GRCGYC 1 cut(s) 456
AfaI GTAC 2 cut(s) 405, 514
AfiI CCNNNNNNNGG 5 cut(s) 204, 382, 385, 441, 480
AjiI CACGTC 1 cut(s) 415
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Ama87I CYCGRG 3 cut(s) 282, 407, 419
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 18
AspLEI GCGC 2 cut(s) 23, 391
AspS9I GGNCC 4 cut(s) 6, 84, 289, 347
AsuC2I CCSGG 3 cut(s) 380, 420, 421
AsuHPI GGTGA 2 cut(s) 5, 109
AvaI CYCGRG 3 cut(s) 282, 407, 419
AvaII GGWCC 4 cut(s) 6, 84, 289, 347
BaeGI GKGCMC 2 cut(s) 312, 420
BanI GGYRCC 1 cut(s) 444
BbrPI CACGTG 2 cut(s) 307, 367
BbvI GCAGC 1 cut(s) 5
BccI CCATC 2 cut(s) 175, 478
BceAI ACGGC 2 cut(s) 11, 443
BcnI CCSGG 3 cut(s) 380, 420, 421
BfaI CTAG 2 cut(s) 327, 510
BisI GCNGC 4 cut(s) 19, 24, 33, 343
BlsI GCNGC 4 cut(s) 20, 25, 34, 344
Bme1390I CCNGG 3 cut(s) 380, 420, 421
Bme18I GGWCC 4 cut(s) 6, 84, 289, 347
BmeT110I CYCGRG 3 cut(s) 282, 407, 419
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 4 cut(s) 6, 84, 289, 347
BmiI GGNNCC 2 cut(s) 446, 499
BmrFI CCNGG 3 cut(s) 380, 420, 421
BpuEI CTTGAG 1 cut(s) 163
BpuMI CCSGG 3 cut(s) 380, 420, 421
Bsa29I ATCGAT 1 cut(s) 113
BsaAI YACGTR 2 cut(s) 307, 367
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 5 cut(s) 152, 189, 281, 408, 419
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 5 cut(s) 204, 382, 385, 441, 480
Bse118I RCCGGY 1 cut(s) 338
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 5 cut(s) 152, 189, 281, 408, 419
BseGI GGATG 3 cut(s) 98, 253, 470
BseLI CCNNNNNNNGG 5 cut(s) 204, 382, 385, 441, 480
BseRI GAGGAG 2 cut(s) 201, 213
BseSI GKGCMC 2 cut(s) 312, 420
BseXI GCAGC 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 444
BshVI ATCGAT 1 cut(s) 113
BsiHKCI CYCGRG 3 cut(s) 282, 407, 419
BsiSI CCGG 4 cut(s) 58, 339, 380, 420
BslI CCNNNNNNNGG 5 cut(s) 204, 382, 385, 441, 480
BsnI GGCC 1 cut(s) 246
BsoBI CYCGRG 3 cut(s) 282, 407, 419
Bsp1286I GDGCHC 2 cut(s) 312, 420
Bsp143I GATC 2 cut(s) 52, 114
Bsp19I CCATGG 1 cut(s) 152
BspACI CCGC 7 cut(s) 16, 24, 33, 312, 342, 345, 383
BspANI GGCC 1 cut(s) 246
BspDI ATCGAT 1 cut(s) 113
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 446, 499
BspT107I GGYRCC 1 cut(s) 444
BsrFI RCCGGY 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 5 cut(s) 152, 189, 281, 408, 419
BssMI GATC 2 cut(s) 52, 114
BssNI GRCGYC 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 456
BstBAI YACGTR 2 cut(s) 307, 367
BstC8I GCNNGC 1 cut(s) 312
BstDSI CCRYGG 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 202
BstF5I GGATG 3 cut(s) 98, 253, 470
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 2 cut(s) 23, 391
BstKTI GATC 2 cut(s) 55, 117
BstMBI GATC 2 cut(s) 52, 114
BstMWI GCNNNNNNNGC 3 cut(s) 29, 32, 320
BstSCI CCNGG 3 cut(s) 378, 418, 419
BstSLI GKGCMC 2 cut(s) 312, 420
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 5
BstXI CCANNNNNNTGG 1 cut(s) 153
Bsu15I ATCGAT 1 cut(s) 113
BsuRI GGCC 1 cut(s) 246
BsuTUI ATCGAT 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 152
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 3 cut(s) 98, 253, 470
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 2 cut(s) 23, 391
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 4 cut(s) 6, 84, 289, 347
Cfr9I CCCGGG 1 cut(s) 419
ClaI ATCGAT 1 cut(s) 113
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 404, 513
CviAII CATG 3 cut(s) 81, 153, 451
CviJI RGCY 3 cut(s) 157, 233, 246
CviKI_1 RGCY 3 cut(s) 157, 233, 246
CviQI GTAC 2 cut(s) 404, 513
DpnI GATC 2 cut(s) 54, 116
DpnII GATC 2 cut(s) 52, 114
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 152
Eco47I GGWCC 4 cut(s) 6, 84, 289, 347
Eco72I CACGTG 2 cut(s) 307, 367
Eco88I CYCGRG 3 cut(s) 282, 407, 419
EcoNI CCTNNNNNAGG 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 3 cut(s) 84, 156, 454
FaiI YATR 4 cut(s) 82, 154, 217, 452
FatI CATG 3 cut(s) 80, 152, 450
FauI CCCGC 2 cut(s) 319, 376
Fnu4HI GCNGC 4 cut(s) 19, 24, 33, 343
FokI GGATG 3 cut(s) 85, 240, 457
Fsp4HI GCNGC 4 cut(s) 19, 24, 33, 343
FspBI CTAG 2 cut(s) 327, 510
GlaI GCGC 2 cut(s) 22, 390
GluI GCNGC 4 cut(s) 19, 24, 33, 343
HaeIII GGCC 1 cut(s) 246
HapII CCGG 4 cut(s) 58, 339, 380, 420
HgaI GACGC 1 cut(s) 464
HhaI GCGC 2 cut(s) 23, 391
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 3 cut(s) 84, 156, 454
Hin6I GCGC 2 cut(s) 21, 389
HinP1I GCGC 2 cut(s) 21, 389
HinfI GANTC 2 cut(s) 208, 294
HpaII CCGG 4 cut(s) 58, 339, 380, 420
HphI GGTGA 2 cut(s) 5, 109
Hpy188I TCNGA 2 cut(s) 258, 475
Hpy188III TCNNGA 3 cut(s) 50, 180, 284
Hpy99I CGWCG 2 cut(s) 32, 175
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4IV ACGT 3 cut(s) 306, 366, 414
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 32, 320
HpySE526I ACGT 3 cut(s) 306, 366, 414
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 3 cut(s) 84, 156, 454
HspAI GCGC 2 cut(s) 21, 389
Kzo9I GATC 2 cut(s) 52, 114
LpnPI CCDG 5 cut(s) 22, 71, 352, 393, 433
Lsp1109I GCAGC 1 cut(s) 5
MaeI CTAG 2 cut(s) 327, 510
MaeII ACGT 3 cut(s) 306, 366, 414
MaeIII GTNAC 3 cut(s) 11, 367, 460
MalI GATC 2 cut(s) 54, 116
MboI GATC 2 cut(s) 52, 114
MboII GAAGA 3 cut(s) 66, 81, 84
MhlI GDGCHC 2 cut(s) 312, 420
MluCI AATT 1 cut(s) 532
MlyI GAGTC 2 cut(s) 202, 303
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 4 cut(s) 58, 339, 380, 420
MspR9I CCNGG 3 cut(s) 380, 420, 421
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 3 cut(s) 29, 32, 320
NciI CCSGG 3 cut(s) 380, 420, 421
NcoI CCATGG 1 cut(s) 152
NdeII GATC 2 cut(s) 52, 114
NlaIII CATG 3 cut(s) 84, 156, 454
NlaIV GGNNCC 2 cut(s) 446, 499
NmeAIII GCCGAG 1 cut(s) 170
NmuCI GTSAC 3 cut(s) 11, 367, 460
PcsI WCGNNNNNNNCGW 4 cut(s) 110, 197, 289, 303
PflFI GACNNNGTC 2 cut(s) 293, 458
PkrI GCNGC 4 cut(s) 20, 25, 34, 344
PleI GAGTC 2 cut(s) 202, 302
PmaCI CACGTG 2 cut(s) 307, 367
PmlI CACGTG 2 cut(s) 307, 367
PpsI GAGTC 2 cut(s) 202, 302
Ppu21I YACGTR 2 cut(s) 307, 367
PpuMI RGGWCCY 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 6
PspCI CACGTG 2 cut(s) 307, 367
PspN4I GGNNCC 2 cut(s) 446, 499
PspPI GGNCC 4 cut(s) 6, 84, 289, 347
PspPPI RGGWCCY 1 cut(s) 6
PsyI GACNNNGTC 2 cut(s) 293, 458
RsaI GTAC 2 cut(s) 405, 514
RsaNI GTAC 2 cut(s) 404, 513
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 4 cut(s) 19, 24, 33, 343
Sau3AI GATC 2 cut(s) 52, 114
Sau96I GGNCC 4 cut(s) 6, 84, 289, 347
SchI GAGTC 2 cut(s) 202, 303
ScrFI CCNGG 3 cut(s) 380, 420, 421
SduI GDGCHC 2 cut(s) 312, 420
SetI ASST 9 cut(s) 11, 179, 200, 235, 276, 309, 352, 369, 417
SgrAI CRCCGGYG 1 cut(s) 338
SinI GGWCC 4 cut(s) 6, 84, 289, 347
SmaI CCCGGG 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 178
SmoI CTYRAG 1 cut(s) 178
Sse9I AATT 1 cut(s) 532
SsiI CCGC 7 cut(s) 16, 24, 33, 312, 342, 345, 383
SspMI CTAG 2 cut(s) 327, 510
StyD4I CCNGG 3 cut(s) 378, 418, 419
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 497
TaiI ACGT 3 cut(s) 309, 369, 417
TaqI TCGA 5 cut(s) 51, 113, 138, 170, 200
TaqII GACCGA 1 cut(s) 306
TasI AATT 1 cut(s) 532
TauI GCSGC 3 cut(s) 26, 35, 345
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TseFI GTSAC 3 cut(s) 11, 367, 460
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 3 cut(s) 11, 367, 460
TspDTI ATGAA 1 cut(s) 242
TspMI CCCGGG 1 cut(s) 419
Tth111I GACNNNGTC 2 cut(s) 293, 458
VpaK11BI GGWCC 4 cut(s) 6, 84, 289, 347
XagI CCTNNNNNAGG 1 cut(s) 202
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XmaI CCCGGG 1 cut(s) 419
XspI CTAG 2 cut(s) 327, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.