Rorug07G0112700

Acetylornithine deacetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005490
Physical Location & Seq
Reverse (-)
8810595 .. 8814982
4388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0112700.1

Sequence Viewer

Length: 1080 bp
ATGAAACGTTTCTTTCAACCAGTAGAGAAAGATGGGTTTGCCAAAAAACCCAACCTTTCATCTCCCAAAAATGGAGAAACTTCAACGGAGGACAAACCCAAGAAAGAGCCAACCAAGTTCTTAACTTGGAATGCCAACAGCTTTCTTCTTCGAGTCAAGAACAACTGGCCTGAGTTTACTAAGTTCATAACCACCTTCGATCCCGATGTCATTGCGATACAGGAAGTTAGGATGCCTGCTGCTGGTTCAAAGGGTGCACCTAAACGCCCAGGAGAGTTGAAAGATGACACTAGCTCATCACGTGAAGAAAAGCAGATAATAATGCGTGCCCTGTCAAATCCACCCTTTGGAGATTATCGTGTTTGGTGGTCTCTTTCAGATTCAAAGTATGCAGGGACTGCATTGATTGTAAAGAAGTGTTTCCAACCCCAAAAAGTATTTTTCAATCTTGACAGAAAAGCTTCGAAGCATGAACCAGATGGTCGGGTTATCTTAGCTGAATTTGAGACATTTCAATTGTTGAATACGTATGCACCAAACAATGGCTGGAAGGAGGAAGAAAACTCATTCCCAAGGAGAAGAAAATGGGATAAAAGGATTTTAGAGTTTGTCTTGCAATGTTCAGATAAGCCTCTCATATGGTGTGGTGATCTGAATGTCAGCCATGAAGAGATCGATGTGAGTCATCCAGATTTTTTCAGTGCAGCAAAGGTTAATGGTTATGTTCCTCCAAATAAAGAGGATTGTGGACAGCCTGGATTTACCTTGTCTGAGAGAAAGCGTTTTGGAAACATATTGAAAGAGGGAAAGCTAATAGATGCATACCGATTCCTACACAAAGAGAAGGACATGGAGGGTGGCTTCTCCTGGTCAGGAAATCCCATTGGAAAGTATAGAGGCAAAAGGATGAGGATAGACTACTTCGTAGTTGCAGAGCAACTCAAAGATAGGATTGTTTCATGTGAGATAAAGGGGCAAGGGATTGAATTACAAGGATTCTATGGAAGTGATCATTGTCCCGTTACCCTCGTGCTTTCAGAAGCACAACCGAATTCTAAGGAGAGTGACTTATCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

359

Amino Acids

41.09

Weight (kDa)

8.9

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 41 - 338 4.8e-19 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 347, 542
AclI AACGTT 1 cut(s) 7
AclWI GGATC 1 cut(s) 194
AcsI RAATTY 2 cut(s) 500, 1051
AcvI CACGTG 1 cut(s) 302
AfiI CCNNNNNNNGG 4 cut(s) 71, 242, 347, 542
AjnI CCWGG 3 cut(s) 268, 754, 866
AluBI AGCT 5 cut(s) 141, 294, 461, 497, 811
AluI AGCT 5 cut(s) 141, 294, 461, 497, 811
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 375, 500
Alw44I GTGCAC 1 cut(s) 255
AlwI GGATC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 1 cut(s) 167
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 239, 704
ApoI RAATTY 2 cut(s) 500, 1051
Asp700I GAANNNNTTC 3 cut(s) 8, 419, 460
AsuHPI GGTGA 1 cut(s) 659
AsuII TTCGAA 1 cut(s) 464
BaeGI GKGCMC 2 cut(s) 259, 331
BauI CACGAG 1 cut(s) 1028
BbrPI CACGTG 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 226, 716
BccI CCATC 2 cut(s) 26, 473
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 3 cut(s) 270, 756, 868
BclI TGATCA 1 cut(s) 1009
BcoDI GTCTC 2 cut(s) 375, 500
BfaI CTAG 1 cut(s) 291
BisI GCNGC 2 cut(s) 240, 705
BlsI GCNGC 2 cut(s) 241, 706
Bme1390I CCNGG 3 cut(s) 270, 756, 868
BmrFI CCNGG 3 cut(s) 270, 756, 868
BmsI GCATC 2 cut(s) 222, 808
Bpu14I TTCGAA 1 cut(s) 464
Bsa29I ATCGAT 1 cut(s) 675
BsaAI YACGTR 2 cut(s) 302, 528
BsaI GGTCTC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 268, 572
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 242, 347, 542
Bse1I ACTGG 2 cut(s) 20, 170
Bse3DI GCAATG 2 cut(s) 210, 623
BseBI CCWGG 3 cut(s) 270, 756, 868
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 268, 572
BseGI GGATG 3 cut(s) 237, 685, 912
BseLI CCNNNNNNNGG 4 cut(s) 71, 242, 347, 542
BseMI GCAATG 2 cut(s) 210, 623
BseMII CTCAG 2 cut(s) 162, 762
BseNI ACTGG 2 cut(s) 20, 170
BseSI GKGCMC 2 cut(s) 259, 331
BseXI GCAGC 2 cut(s) 226, 716
BsgI GTGCAG 1 cut(s) 723
BshFI GGCC 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 259
BslFI GGGAC 2 cut(s) 409, 1002
BslI CCNNNNNNNGG 4 cut(s) 71, 242, 347, 542
BsmAI GTCTC 2 cut(s) 375, 500
BsmFI GGGAC 2 cut(s) 409, 1002
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 375
Bsp119I TTCGAA 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 259, 331
Bsp143I GATC 4 cut(s) 199, 649, 672, 1009
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 2 cut(s) 163, 763
BspDI ATCGAT 1 cut(s) 675
BspPI GGATC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 375
BsrDI GCAATG 2 cut(s) 210, 623
BsrI ACTGG 2 cut(s) 20, 170
BssECI CCNNGG 2 cut(s) 268, 572
BssMI GATC 4 cut(s) 199, 649, 672, 1009
BssSI CACGAG 1 cut(s) 1028
BssT1I CCWWGG 1 cut(s) 572
Bst2BI CACGAG 1 cut(s) 1028
Bst2UI CCWGG 3 cut(s) 270, 756, 868
Bst6I CTCTTC 1 cut(s) 663
BstAPI GCANNNNNTGC 1 cut(s) 398
BstBAI YACGTR 2 cut(s) 302, 528
BstBI TTCGAA 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 237, 327
BstDEI CTNAG 5 cut(s) 171, 180, 493, 771, 1056
BstF5I GGATG 3 cut(s) 237, 685, 912
BstKTI GATC 4 cut(s) 202, 652, 675, 1012
BstMAI GTCTC 2 cut(s) 375, 500
BstMBI GATC 4 cut(s) 199, 649, 672, 1009
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 3 cut(s) 270, 756, 868
BstSCI CCNGG 3 cut(s) 268, 754, 866
BstSLI GKGCMC 2 cut(s) 259, 331
BstSNI TACGTA 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 226, 716
Bsu15I ATCGAT 1 cut(s) 675
BsuRI GGCC 1 cut(s) 169
BsuTUI ATCGAT 1 cut(s) 675
BtsCI GGATG 3 cut(s) 237, 685, 912
BtsIMutI CAGTG 1 cut(s) 706
Cac8I GCNNGC 2 cut(s) 237, 327
CaiI CAGNNNCTG 1 cut(s) 398
ClaI ATCGAT 1 cut(s) 675
CviAII CATG 4 cut(s) 470, 665, 850, 960
DdeI CTNAG 5 cut(s) 171, 180, 493, 771, 1056
DpnI GATC 4 cut(s) 201, 651, 674, 1011
DpnII GATC 4 cut(s) 199, 649, 672, 1009
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco105I TACGTA 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 572
Eco31I GGTCTC 1 cut(s) 375
Eco72I CACGTG 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 1051
EcoRII CCWGG 3 cut(s) 268, 754, 866
EcoT14I CCWWGG 1 cut(s) 572
EcoT22I ATGCAT 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 4 cut(s) 473, 668, 853, 963
FaqI GGGAC 2 cut(s) 409, 1002
FatI CATG 4 cut(s) 469, 664, 849, 959
FauNDI CATATG 1 cut(s) 638
FbaI TGATCA 1 cut(s) 1009
Fnu4HI GCNGC 2 cut(s) 240, 705
FokI GGATG 3 cut(s) 244, 672, 919
Fsp4HI GCNGC 2 cut(s) 240, 705
FspBI CTAG 1 cut(s) 291
GluI GCNGC 2 cut(s) 240, 705
HaeIII GGCC 1 cut(s) 169
Hin1II CATG 4 cut(s) 473, 668, 853, 963
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 5 cut(s) 153, 380, 682, 828, 996
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 3 cut(s) 177, 257, 749
Hpy188I TCNGA 5 cut(s) 379, 625, 654, 772, 1039
Hpy188III TCNNGA 5 cut(s) 157, 203, 449, 689, 873
Hpy8I GTNNAC 3 cut(s) 177, 257, 749
HpyAV CCTTC 3 cut(s) 205, 544, 838
HpyCH4IV ACGT 3 cut(s) 7, 301, 527
HpyCH4V TGCA 9 cut(s) 257, 392, 401, 533, 616, 704, 821, 932, 1076
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 5 cut(s) 171, 180, 493, 771, 1056
HpySE526I ACGT 3 cut(s) 7, 301, 527
Hsp92II CATG 4 cut(s) 473, 668, 853, 963
Ksp22I TGATCA 1 cut(s) 1009
Kzo9I GATC 4 cut(s) 199, 649, 672, 1009
Lsp1109I GCAGC 2 cut(s) 226, 716
LweI GCATC 2 cut(s) 222, 808
MaeI CTAG 1 cut(s) 291
MaeII ACGT 3 cut(s) 7, 301, 527
MaeIII GTNAC 2 cut(s) 1021, 1064
MalI GATC 4 cut(s) 201, 651, 674, 1011
MboI GATC 4 cut(s) 199, 649, 672, 1009
MboII GAAGA 6 cut(s) 137, 140, 317, 569, 591, 680
MfeI CAATTG 1 cut(s) 515
MhlI GDGCHC 2 cut(s) 259, 331
MluCI AATT 4 cut(s) 500, 515, 986, 1051
MlyI GAGTC 2 cut(s) 162, 691
MmeI TCCRAC 1 cut(s) 448
Mph1103I ATGCAT 1 cut(s) 823
MroXI GAANNNNTTC 3 cut(s) 8, 419, 460
MseI TTAA 2 cut(s) 122, 714
MspR9I CCNGG 3 cut(s) 270, 756, 868
MunI CAATTG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 3 cut(s) 270, 756, 868
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeI CATATG 1 cut(s) 638
NdeII GATC 4 cut(s) 199, 649, 672, 1009
NlaIII CATG 4 cut(s) 473, 668, 853, 963
NmuCI GTSAC 1 cut(s) 1064
NsiI ATGCAT 1 cut(s) 823
NspV TTCGAA 1 cut(s) 464
PctI GAATGC 1 cut(s) 136
PdmI GAANNNNTTC 3 cut(s) 8, 419, 460
PfeI GAWTC 3 cut(s) 380, 828, 996
PflMI CCANNNNNTGG 2 cut(s) 347, 542
PkrI GCNGC 2 cut(s) 241, 706
PleI GAGTC 2 cut(s) 161, 690
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
PpsI GAGTC 2 cut(s) 161, 690
Ppu21I YACGTR 2 cut(s) 302, 528
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 3 cut(s) 268, 754, 866
PspCI CACGTG 1 cut(s) 302
PspGI CCWGG 3 cut(s) 268, 754, 866
PstNI CAGNNNCTG 1 cut(s) 398
SaqAI TTAA 2 cut(s) 122, 714
SatI GCNGC 2 cut(s) 240, 705
Sau3AI GATC 4 cut(s) 199, 649, 672, 1009
SchI GAGTC 2 cut(s) 162, 691
ScrFI CCNGG 3 cut(s) 270, 756, 868
SduI GDGCHC 2 cut(s) 259, 331
SfaNI GCATC 2 cut(s) 222, 808
SfuI TTCGAA 1 cut(s) 464
SnaBI TACGTA 1 cut(s) 528
Sse9I AATT 4 cut(s) 500, 515, 986, 1051
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 268, 754, 866
StyI CCWWGG 1 cut(s) 572
TaiI ACGT 3 cut(s) 10, 304, 530
TaqI TCGA 4 cut(s) 151, 198, 464, 675
TasI AATT 4 cut(s) 500, 515, 986, 1051
TfiI GAWTC 3 cut(s) 380, 828, 996
Tru1I TTAA 2 cut(s) 122, 714
Tru9I TTAA 2 cut(s) 122, 714
TscAI CASTG 1 cut(s) 706
TseFI GTSAC 1 cut(s) 1064
TseI GCWGC 2 cut(s) 239, 704
Tsp45I GTSAC 1 cut(s) 1064
TspDTI ATGAA 6 cut(s) 17, 48, 175, 486, 681, 948
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 706
Van91I CCANNNNNTGG 2 cut(s) 347, 542
VneI GTGCAC 1 cut(s) 255
XapI RAATTY 2 cut(s) 500, 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 543
XmnI GAANNNNTTC 3 cut(s) 8, 419, 460
XspI CTAG 1 cut(s) 291
Zsp2I ATGCAT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.