Rorug07G0112800

Acetylornithine deacetylase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005490
Physical Location & Seq
Forward (+)
8816229 .. 8821999
5771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0112800.1

Sequence Viewer

Length: 1308 bp
ATGGCGTCAATGGCCTTCGGTCTTTCCTTAGCTACATTATCTTCTACCAACCTTTTACAATCTCACAAAAAGACCACCTCCATTTCCAACCTCAAATCCCATCAAAGCACCTTACCATCTTCTCTATTGGGCACAAAAGTTCTCATTAGCAAAACACAGAGACCAATAATAAGAACATGTCATTCTCAGGTCACTTGTTCAGTTGCTTCTTCTTCTTCGACTCTCCCATCGGCTCTTCTATTTGACTGTGATGGCGTTCTTGTCGACACGGAGAAAGATGGGCACCGCATTTCTTTCAATGAAACTTTCAAAGAGGTAACATTTGGAGCTGTGAGAAATTCATTCAATTCTACAATTGGGTTTCCTAGTTTTGCTTGTGACTTAGACGAATTGATTGATGAACAGAAAGAATTGGGTGTTACTTGGGATGTAGATTTGTATGGCGAATTGCTCAAGATTGGAGGTGGAAAAGAAAGGATGACTGCCTATTTTAACAAGACGGGTTGGCCGGAAAAAGCTCCAAAGAGCGAGGAAGAGAGAAAAGCATTCATAGCTTCACTGCACAAGCGAAAGACTGAATTGTTCATGGCCCTCATTGAGAAGAAGTTGCTGCCTCTTCGTCCGGGAGTTGCAAAGTTGATAGACCAGGCTTTAGCAGAAGGAGTTAAAGTTGCTGTGTGCAGCACTTCCAATGAGAAGGCGGTATCCGCAATAGTTTCTTTCTTGCTGGGACCAGAGCGGGCAGAGAAAATCCAGATATTTGCAGGAGATGTGGTTCCCCGAAAGAAGCCTGATCCAGCCATCTATGTATTGGCGGCTAACACGCTCAATGTTGATCCTTCAAGTTGTGTTGTGGTAGAGGACAGTGGCATAGGCCTTGCAGCTGCCAAAGCTGCTGGAATGAAGTGTATAGTAACCAAGAGCGGATACACAGCCGATGAAGACTTTCAGAATGCAGATGCTGTCTTTGACTTCATAGGAGATCCCCCAGAGGAGCGGTTCGACTTGGCATTCTGCAGAAGCCTTCTCAAGCAGTTGAAAGATCAGGCTTTAGCAGAAGGAGTTAAAGTTGCTGTGTGCAGCAGTTCCAATGAGAAGGCGGTATACTTAATCAGTTGTGTTGTGGTAGAAGACAGCGGCATAGGCCTTGCAACTGCCAAAGCTACTGGACTGAACTGTATAGAAACCAAGAGCGGATACACAGCCGATGAAGACTTTCAGAATGCAGATGCTGTATTTGACTTCATAGGACATCCCCAAGATGACTACTTGGCATTCTGCAGAAGCCTTCTCAAGCAGTACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

435

Amino Acids

47.0

Weight (kDa)

5.46

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 78 - 300 1.3e-23 haloacid dehalogenase-like hydrolase
HAD_2 PF13419 187 - 305 8.2e-12 Haloacid dehalogenase-like hydrolase
Hydrolase_like PF13242 263 - 321 1.2e-07 HAD-hyrolase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AccBSI CCGCTC 4 cut(s) 739, 924, 997, 1194
AccI GTMKAC 2 cut(s) 264, 1104
AclWI GGATC 3 cut(s) 788, 830, 977
AcoI YGGCCR 1 cut(s) 506
AcsI RAATTY 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 1301
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 5 cut(s) 298, 310, 346, 843, 1039
AjnI CCWGG 1 cut(s) 645
AloI GAACNNNNNNTCC 2 cut(s) 759, 791
AluBI AGCT 7 cut(s) 32, 329, 518, 554, 884, 893, 1163
AluI AGCT 7 cut(s) 32, 329, 518, 554, 884, 893, 1163
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 3 cut(s) 788, 830, 977
AlwNI CAGNNNCTG 2 cut(s) 962, 1232
AoxI GGCC 5 cut(s) 12, 506, 588, 874, 1144
ApeKI GCWGC 6 cut(s) 610, 681, 881, 884, 893, 1080
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 2 cut(s) 945, 1215
AspS9I GGNCC 2 cut(s) 589, 731
AsuC2I CCSGG 1 cut(s) 624
AvaII GGWCC 1 cut(s) 731
BaeGI GKGCMC 2 cut(s) 134, 285
BanI GGYRCC 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 1088, 1120
BbsI GAAGAC 3 cut(s) 948, 1137, 1218
BbvI GCAGC 6 cut(s) 597, 693, 871, 880, 893, 1092
BccI CCATC 6 cut(s) 108, 124, 235, 245, 272, 809
BciT130I CCWGG 1 cut(s) 647
BciVI GTATCC 3 cut(s) 715, 920, 1190
BcnI CCSGG 1 cut(s) 624
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 2 cut(s) 1015, 1279
BfuI GTATCC 3 cut(s) 715, 920, 1190
BisI GCNGC 8 cut(s) 611, 682, 816, 882, 885, 894, 1081, 1138
BlsI GCNGC 8 cut(s) 612, 683, 817, 883, 886, 895, 1082, 1139
BmcAI AGTACT 1 cut(s) 1301
Bme1390I CCNGG 2 cut(s) 624, 647
Bme18I GGWCC 1 cut(s) 731
BmgT120I GGNCC 2 cut(s) 589, 731
BmiI GGNNCC 3 cut(s) 284, 732, 777
BmrFI CCNGG 2 cut(s) 624, 647
BmsI GCATC 2 cut(s) 949, 1219
BpiI GAAGAC 3 cut(s) 948, 1137, 1218
Bpu10I CCTNAGC 1 cut(s) 28
BpuEI CTTGAG 3 cut(s) 437, 1013, 1277
BpuMI CCSGG 1 cut(s) 624
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 154
BsaXI ACNNNNNCTCC 6 cut(s) 654, 684, 759, 789, 1053, 1083
Bse1I ACTGG 1 cut(s) 1171
BseBI CCWGG 1 cut(s) 647
BseGI GGATG 3 cut(s) 433, 483, 1252
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 1171
BseRI GAGGAG 1 cut(s) 1007
BseSI GKGCMC 2 cut(s) 134, 285
BseXI GCAGC 6 cut(s) 597, 693, 871, 880, 893, 1092
BseYI CCCAGC 1 cut(s) 727
BsgI GTGCAG 3 cut(s) 545, 700, 1099
BshFI GGCC 5 cut(s) 14, 508, 590, 876, 1146
BshNI GGYRCC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 509, 623
BslFI GGGAC 1 cut(s) 744
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 744
BsmI GAATGC 5 cut(s) 545, 958, 1010, 1228, 1274
BsnI GGCC 5 cut(s) 14, 508, 590, 876, 1146
Bso31I GGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 134, 285
Bsp143I GATC 4 cut(s) 793, 835, 982, 1042
BspANI GGCC 5 cut(s) 14, 508, 590, 876, 1146
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 3 cut(s) 284, 732, 777
BspMAI CTGCAG 2 cut(s) 1019, 1283
BspPI GGATC 3 cut(s) 788, 830, 977
BspQI GCTCTTC 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 154
BsrBI CCGCTC 4 cut(s) 739, 924, 997, 1194
BsrI ACTGG 1 cut(s) 1171
BssMI GATC 4 cut(s) 793, 835, 982, 1042
BssNAI GTATAC 1 cut(s) 1105
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 1105
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 3 cut(s) 248, 866, 1178
Bst6I CTCTTC 3 cut(s) 240, 528, 621
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 3 cut(s) 28, 186, 382
BstF5I GGATG 3 cut(s) 433, 483, 1252
BstKTI GATC 4 cut(s) 796, 838, 985, 1045
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 4 cut(s) 793, 835, 982, 1042
BstMWI GCNNNNNNNGC 6 cut(s) 11, 551, 707, 890, 893, 1143
BstNI CCWGG 1 cut(s) 647
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 622, 645
BstSFI CTRYAG 2 cut(s) 1015, 1279
BstSLI GKGCMC 2 cut(s) 134, 285
BstV1I GCAGC 6 cut(s) 597, 693, 871, 880, 893, 1092
BstV2I GAAGAC 3 cut(s) 948, 1137, 1218
BstX2I RGATCY 1 cut(s) 982
BstYI RGATCY 1 cut(s) 982
BstZ17I GTATAC 1 cut(s) 1105
BsuI GTATCC 3 cut(s) 715, 920, 1190
BsuRI GGCC 5 cut(s) 14, 508, 590, 876, 1146
BtsCI GGATG 3 cut(s) 433, 483, 1252
BtsI GCAGTG 1 cut(s) 557
BtsIMutI CAGTG 2 cut(s) 557, 871
Cac8I GCNNGC 1 cut(s) 741
CaiI CAGNNNCTG 2 cut(s) 962, 1232
Cfr13I GGNCC 2 cut(s) 589, 731
Csp6I GTAC 1 cut(s) 1300
CviAII CATG 2 cut(s) 177, 586
CviQI GTAC 1 cut(s) 1300
DdeI CTNAG 3 cut(s) 28, 186, 382
DpnI GATC 4 cut(s) 795, 837, 984, 1044
DpnII GATC 4 cut(s) 793, 835, 982, 1042
EaeI YGGCCR 1 cut(s) 506
Eam1104I CTCTTC 3 cut(s) 240, 528, 621
EarI CTCTTC 3 cut(s) 240, 528, 621
Eco147I AGGCCT 2 cut(s) 876, 1146
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 731
EcoRII CCWGG 1 cut(s) 645
FaeI CATG 2 cut(s) 180, 589
FalI AAGNNNNNCTT 1 cut(s) 1286
FaqI GGGAC 1 cut(s) 744
FatI CATG 2 cut(s) 176, 585
FauI CCCGC 1 cut(s) 732
FblI GTMKAC 2 cut(s) 264, 1104
Fnu4HI GCNGC 8 cut(s) 611, 682, 816, 882, 885, 894, 1081, 1138
FokI GGATG 3 cut(s) 440, 490, 1239
Fsp4HI GCNGC 8 cut(s) 611, 682, 816, 882, 885, 894, 1081, 1138
FspBI CTAG 1 cut(s) 366
GluI GCNGC 8 cut(s) 611, 682, 816, 882, 885, 894, 1081, 1138
GsaI CCCAGC 1 cut(s) 731
HaeIII GGCC 5 cut(s) 14, 508, 590, 876, 1146
HapII CCGG 2 cut(s) 509, 623
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 180, 589
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 1 cut(s) 220
HpaII CCGG 2 cut(s) 509, 623
Hpy166II GTNNAC 2 cut(s) 265, 1105
Hpy188I TCNGA 2 cut(s) 951, 1221
Hpy188III TCNNGA 2 cut(s) 454, 754
Hpy8I GTNNAC 2 cut(s) 265, 1105
HpyAV CCTTC 8 cut(s) 25, 653, 691, 849, 1034, 1052, 1090, 1298
HpyCH4III ACNGT 3 cut(s) 248, 866, 1178
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 551, 707, 890, 893, 1143
HpyF3I CTNAG 3 cut(s) 28, 186, 382
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 180, 589
Kzo9I GATC 4 cut(s) 793, 835, 982, 1042
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 3 cut(s) 326, 523, 994
Lsp1109I GCAGC 6 cut(s) 597, 693, 871, 880, 893, 1092
LweI GCATC 2 cut(s) 949, 1219
MaeI CTAG 1 cut(s) 366
MaeIII GTNAC 5 cut(s) 190, 316, 377, 418, 913
MalI GATC 4 cut(s) 795, 837, 984, 1044
MbiI CCGCTC 4 cut(s) 739, 924, 997, 1194
MboI GATC 4 cut(s) 793, 835, 982, 1042
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 2 cut(s) 134, 285
MluCI AATT 7 cut(s) 337, 346, 354, 389, 410, 446, 578
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 9 cut(s) 88, 101, 307, 455, 523, 602, 624, 853, 985
MroXI GAANNNNTTC 2 cut(s) 945, 1215
MseI TTAA 4 cut(s) 492, 666, 1065, 1109
MspA1I CMGCKG 2 cut(s) 884, 1137
MspI CCGG 2 cut(s) 509, 623
MspR9I CCNGG 2 cut(s) 624, 647
MunI CAATTG 1 cut(s) 354
Mva1269I GAATGC 5 cut(s) 545, 958, 1010, 1228, 1274
MvaI CCWGG 1 cut(s) 647
MwoI GCNNNNNNNGC 6 cut(s) 11, 551, 707, 890, 893, 1143
NciI CCSGG 1 cut(s) 624
NdeII GATC 4 cut(s) 793, 835, 982, 1042
NlaIII CATG 2 cut(s) 180, 589
NlaIV GGNNCC 3 cut(s) 284, 732, 777
NmuCI GTSAC 2 cut(s) 190, 377
NspI RCATGY 1 cut(s) 180
PceI AGGCCT 2 cut(s) 876, 1146
PciI ACATGT 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 240
PctI GAATGC 5 cut(s) 545, 958, 1010, 1228, 1274
PdmI GAANNNNTTC 2 cut(s) 945, 1215
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 8 cut(s) 612, 683, 817, 883, 886, 895, 1082, 1139
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PscI ACATGT 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 645
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 3 cut(s) 284, 732, 777
PspPI GGNCC 2 cut(s) 589, 731
PstI CTGCAG 2 cut(s) 1019, 1283
PstNI CAGNNNCTG 2 cut(s) 962, 1232
PsuI RGATCY 1 cut(s) 982
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 1 cut(s) 1301
RsaNI GTAC 1 cut(s) 1300
SalI GTCGAC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 4 cut(s) 492, 666, 1065, 1109
SatI GCNGC 8 cut(s) 611, 682, 816, 882, 885, 894, 1081, 1138
Sau3AI GATC 4 cut(s) 793, 835, 982, 1042
Sau96I GGNCC 2 cut(s) 589, 731
ScaI AGTACT 1 cut(s) 1301
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 624, 647
SduI GDGCHC 2 cut(s) 134, 285
SfaNI GCATC 2 cut(s) 949, 1219
SfcI CTRYAG 2 cut(s) 1015, 1279
SinI GGWCC 1 cut(s) 731
SmlI CTYRAG 3 cut(s) 452, 1028, 1292
SmoI CTYRAG 3 cut(s) 452, 1028, 1292
Sse9I AATT 7 cut(s) 337, 346, 354, 389, 410, 446, 578
SseBI AGGCCT 2 cut(s) 876, 1146
SspMI CTAG 1 cut(s) 366
StuI AGGCCT 2 cut(s) 876, 1146
StyD4I CCNGG 2 cut(s) 622, 645
TaaI ACNGT 3 cut(s) 248, 866, 1178
TaqI TCGA 3 cut(s) 218, 264, 1002
TaqII GACCGA 1 cut(s) 8
TasI AATT 7 cut(s) 337, 346, 354, 389, 410, 446, 578
TatI WGTACW 1 cut(s) 1299
TauI GCSGC 2 cut(s) 818, 1140
Tru1I TTAA 4 cut(s) 492, 666, 1065, 1109
Tru9I TTAA 4 cut(s) 492, 666, 1065, 1109
TscAI CASTG 2 cut(s) 564, 871
TseFI GTSAC 2 cut(s) 190, 377
TseI GCWGC 6 cut(s) 610, 681, 881, 884, 893, 1080
Tsp45I GTSAC 2 cut(s) 190, 377
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 2 cut(s) 564, 871
VpaK11BI GGWCC 1 cut(s) 731
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 808
XmiI GTMKAC 2 cut(s) 264, 1104
XmnI GAANNNNTTC 2 cut(s) 945, 1215
XspI CTAG 1 cut(s) 366
ZrmI AGTACT 1 cut(s) 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.