pycom06g03550

Regulator of nonsense transcripts 1 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
4459081 .. 4471209
12129 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03550.8

Sequence Viewer

Length: 4155 bp
ATGCCCACTATACGTGCCACGTCGTACCTCCAAGAGACGCACCCGGTCACGTGCCAGCGCGTCCCAAATATTGCAAAAAAAGTGGGTCCCATTTGGGCACTCGCCCAAAAACGAAACTTACAAAAACCCCCTCACACGGACTCTCTCTCTCTCTCTCCACGACGTCTTCACCCATCACACCTCCCACACTCTCTCTTCTTAAACGTCTTTCTTCTCTCTTCGCATCAATTTCCTTCACCAAACACTAACCCTAACCCTAACCCCCCTTCCACCCCCAAAAGATTTCAATTCCGCACCCCGACCATGGATTCGGAGCCCAACAACCTCTTTGACACGGCGTCGCAGCCCGACACCGCCAACGACGCCTACACCTTCCTCGAATTCAACACCCAGGGCGAGGACTTTGACTACCCGGAGTTCCGCGACCCGATTCGCTCTCCTGTCGCCTGGCCCACCCCTTCAGATTCCTTATCGGAACCTGCAGACCGTGACCGTGGCGGTGGTGGGGTCGGGTCCGACCACCAGTCCGATGCGTCGCCGGTTTCTGCTGCCCCGGGCAGCGCCACAAAGGCTAGGGCAGGTGGGTCGGGCAGTAACGCCGGCAATAATCAGGTGGTTGACGTCCTAACGCCTGGGATGAGTGTGCTTAACTTTGAGGATACTGGGGATGACGACAATTACGAGTTTGGAAAAGGGGATTTTACAGAACATGCGTGCCGGTACTGCGGCGTGTCGAACCCGGCTTGCGTTGTGAGGTGTAATGTGCCTTCGTGTCGAAAATGGTTCTGTAATTCAAGGGGGAACACTTCCGGCTCTCATATTGTGAATCACCTGGTCCGAGCAAAACACAAGGAAGTCTGTCTTCATAAAGATAGCCCATTGGGAGAAACAATCCTTGAATGCTACAACTGTGGATGTCGTAATGTATTTCTTCTTGGATTTATTTCAGCCAAGACAGAGAGTGTTGTTGTTCTTCTTTGTAGGGAACCCTGCTTAAGTGTTAATGCATTGAAGGATATGAAATGGATCGATCTGAGCCAGTGGTGTCCCCTGATAGATGATAGGTGTTTCTTGCAGTGGCTTGTTAAGGTCCCGTCTGAACAGGAGCAGCTAAGGGCGCGCCAAATCAGTGCTCAACAAATAAATAAGGTAGAAGAACTTTGGAAGTCCAATCCTGATGCTTCCCTTGAAGATCTCGAGAAGCCTGGTGTGGATGATGAACCCCAACCTGTGGCCTTGAAGTATGAAGATGCTTACCAGTATCAAAATGTGTTTGCACCACTTATTAAACTTGAAGCTGACTATGATAAAATGATGAAAGAATCTCAAAGCAAAGACAATGTCACAATTCGGTGGGATATTGGTCTTAACAAGAAGCGTATTGCTTATTTTGTGTTTCCAAAGGAAGACAATGAGTTACGTCTTGTACCTGGTGATGAGTTGCGGCTTCGTTATTCTGGAGATGCAGCTCATCCAGCATGGCAGTCAGTGGGACATGTTATCAAGTTAACTGCACAAGAGGAGGTTGCACTTGAACTTCGTGCCAGTCAGGGAGTTCCAGTTGATGTGAACCATGGCTTCAGTGTTGACTTTGTCTGGAAGAGTACAAGTTTTGATCGGATGCAGGGGGCCATGAAAGCTTTTGCAGTGGACGAGACAAGTGTTAGTGGATATATTTACCATCATTTGTTAGGCCATGAAGTAGAGGTTCAAATGGTCCGTAATACATTGCCCCGTCGTTTTGGTGCACCTGGTCTTCCGGAGCTCAATGCATCTCAAGTTTTTGCTGTAAAGAGTGTCCTTCAGAAGCCTATAAGTTTGATCGAGGGTCCACCTGGCACAGGAAAAACTGTGACTTCTGCAGCAATTGTGTATCACATGGCTAAACAAGGCCAGGGACAGGTTTTGGTTTGTGCTCCTAGTAATGTTGCTGTAGACCAACTAGCTGAGAAGATAAGTGCAACTGGGTTGAAGGTTGTCAGACTTTGTGCAAAATCAAGGGAAGCTGTTAGTTCTCCTGTTGAGCATTTAACCCTTCATTACCAGGTTCGTCATCTTGACACGTCAGAAAAGAGTGAACTGTACAAGCTACAACAATTGAAGGATGAGCAAGGAGAATTGTCTAGTAGCGATGAGAAAAAATATAAGGCACTGAAGCGGGCAACCGAGAGGGAGATTTCTCAAAGTGCTGATGTCATTTGTTGCACATGTGTTGGTGCTGGAGATCCACGATTGGCCAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCTACTCAGTCTACGGAGCCTGAATGCCTGATTCCTTTGGTTCTTGGGGCAAAGCAGGTTGTTCTTGTTGGAGATCACTGCCAGCTTGGGCCAGTCATTAAGTGCAAGAAAGCAGCTCGTGCTGGGCTTGCCCAGTCTCTCTTTGAACGCCTCGTTTTACTTGGTGTGAAACCAATTAGATTGCAGGTTCAATACCGAATGCATCCAGCCTTGTCAGAATTTCCATCTAATAGCTTCTATGAGGGCACGCTTCAAAATGGAGTCACCATCAATGAAAGGCAATCTTCAGGCATTGATTTTCCTTGGCCGGTTCCCAATCGTCCCATGTTCTTTTATGTACAGATGGGCCAAGAGGAGATAAGTGCTAGTGGAACATCCTATCTGAACAGAACTGAGGCTGCTAATGTTGAAAAGATTGTCACAACATTCTTGAGGAGTGGTGTAGTCCCTAGTCAGATTGGAGTGATCGCACCGTATGAGGGACAGAGAGCTTATATTGTGAACTATATGTCGCGAAATGGTGCTCTCAGACAGCAACTTTATAAGGAAATTGAGGTTGCAAGCGTAGATTCATTTCAGGGAAGGGAAAAGGATTATATCATCCTTTCGTGTGTGAGGAGTAATGAGCATCAGGGCATCGGATTCCTTAATGATCCTCGCAGGCTCAATGTTGCTCTAACACGTGCTCGATATGGTATTGTCATTCTTGGAAACCCTAAAGTTCTTAGTAAACAGCCACTGTGGAATAGCTTGTTGACACATTACAAGGAACACGAGTGCTTGGTTGAGGGGCCTCTAAATAACCTGAAGCAGAGTATGGTGCAATTTCCAAAGCCTAAAAAGATCTACAATGATCGGCGCCTATTCTTTGGAGGTGGTCCTGGAGTTATCCCCAATGACAGTTTTGGGTCTGTTGCCTCAGCTGGCCAAAATGCGGACAGAAGAAGTAATCGTGGTAGGGGTTCTTACCTACCTCCTGCCCCACCCAATGGTACCCATAAGCCTGGTGTACATCCTGCTGGATATCCAATGCCTCGGGCACCTCTTTCACCATTCCACGGAGGACCCCTTTCTCAACCGTATGCTATTCCAACTCGTGGAGCTGTGCATGGACCAGTTGGAGCTGTTCCTCATGTCCCTCAATCTGGAAGTCGTGGTTTTGGGGCAGGACGCGGAAATGCTGGTGCTCCAATTGGCAGTCATCTTCCGCACCAGCAAGGCACACAACAGAATGTTGGGAATATGGGGTCTACCTTCAACTTTCCTGCTCTTGAAAATCCAAATAGCCAACCATCTGTTGGTGGCCCCTTATCTCAACCTGGATTTGTCAATAATATGCCAGTTCAAGGGCCAAGCCAAACATTTCGTGATGGATTTTCCATGGCGGGCATGTCTCAGGAATTTTTGGGTGACGACTTTAAAAGTCAGGGATCACATGTTCCTTATAATGTTGCTGACTTCTCCACACAGGCTTCTCAAAGTGGATATGCTGTTGATTATGTTACTCAAGGAGCACAAGGTGGGTTTCCAGGGAACTTTCTGAACCAGAACTCTCAAGCTGGATATTCTCGATTTGGTACAGGGAATGACTTCATGTCTCAGGACTACATGCCTCATGGATCACAAGGCCTATTTACTCAGGTGGGCTTTAATGACCCATCACAGGATGAATGGGTTGGGCATATGACCAACATGTTTACTCTGATACGTTCAACATATTTTCAGGGCTTTATGAACTCGCTGTACTCTCAGCCGTTTGCCCATTACAACACACAGCCAATGAACTTGCAGGCCCCACCACAACAGCAGCAGCAGCAGCCACCGCAGCCTCAGCCTCAGCAGGGTCAGACCTCCCAAAATCAGAAAATCCACTACAATGGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

1385

Amino Acids

152.51

Weight (kDa)

7.39

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2814, 3717
AarI CACCTGC 1 cut(s) 569
AatII GACGTC 2 cut(s) 166, 624
Acc36I ACCTGC 4 cut(s) 487, 569, 2317, 2446
Acc65I GGTACC 1 cut(s) 3263
AccB1I GGYRCC 3 cut(s) 3129, 3263, 3310
AccB7I CCANNNNNTGG 4 cut(s) 1231, 3260, 3368, 3569
AccI GTMKAC 4 cut(s) 1935, 2273, 2282, 3521
AccII CGCG 5 cut(s) 60, 423, 1120, 2785, 3444
AccIII TCCGGA 1 cut(s) 1759
AclWI GGATC 5 cut(s) 1034, 2219, 2918, 3709, 3898
AcoI YGGCCR 3 cut(s) 2235, 2576, 3196
AcsI RAATTY 3 cut(s) 380, 2489, 3671
AcuI CTGAAG 6 cut(s) 444, 1564, 1787, 2174, 2541, 3098
AcvI CACGTG 2 cut(s) 51, 2954
AcyI GRCGYC 5 cut(s) 163, 338, 363, 621, 3130
AdeI CACNNNGTG 1 cut(s) 3791
AflII CTTAAG 1 cut(s) 994
AflIII ACRYGT 6 cut(s) 1495, 2061, 2207, 2951, 3706, 3963
AhdI GACNNNNNGTC 3 cut(s) 337, 523, 3865
AjiI CACGTC 2 cut(s) 21, 2064
AjuI GAANNNNNNNTTGG 2 cut(s) 2231, 2263
AloI GAACNNNNNNTCC 2 cut(s) 3693, 3725
Alw21I GWGCWC 8 cut(s) 1135, 1750, 1767, 1918, 2797, 2959, 3460, 3787
Alw26I GTCTC 5 cut(s) 29, 1649, 2412, 3669, 3873
Alw44I GTGCAC 1 cut(s) 1746
AlwI GGATC 5 cut(s) 1034, 2219, 2918, 3709, 3898
AlwNI CAGNNNCTG 1 cut(s) 3010
Ama87I CYCGRG 3 cut(s) 553, 1196, 3306
Aor13HI TCCGGA 1 cut(s) 1759
ApaLI GTGCAC 1 cut(s) 1746
ApoI RAATTY 3 cut(s) 380, 2489, 3671
ArsI GACNNNNNNTTYG 4 cut(s) 292, 324, 1326, 1358
AscI GGCGCGCC 1 cut(s) 1118
Asp700I GAANNNNTTC 1 cut(s) 3860
Asp718I GGTACC 1 cut(s) 3263
AspLEI GCGC 5 cut(s) 60, 563, 1120, 1122, 3132
AsuC2I CCSGG 5 cut(s) 44, 413, 554, 555, 740
AsuHPI GGTGA 7 cut(s) 161, 228, 821, 1445, 2527, 3312, 3692
AvaI CYCGRG 3 cut(s) 553, 1196, 3306
AvaII GGWCC 9 cut(s) 86, 513, 835, 1090, 1717, 1829, 3149, 3335, 3383
BaeGI GKGCMC 4 cut(s) 100, 1750, 2519, 3313
BalI TGGCCA 2 cut(s) 2237, 3198
BanI GGYRCC 3 cut(s) 3129, 3263, 3310
BanII GRGCYC 2 cut(s) 318, 1767
BarI GAAGNNNNNNTAC 2 cut(s) 751, 783
BauI CACGAG 3 cut(s) 2388, 3044, 3366
BbrPI CACGTG 2 cut(s) 51, 2954
BbsI GAAGAC 4 cut(s) 158, 854, 1413, 1748
Bbv12I GWGCWC 8 cut(s) 1135, 1750, 1767, 1918, 2797, 2959, 3460, 3787
BbvCI CCTCAGC 3 cut(s) 3190, 4101, 4107
BccI CCATC 8 cut(s) 181, 1689, 2503, 2546, 2608, 3571, 3635, 3937
BceAI ACGGC 2 cut(s) 351, 4009
BcgI CGANNNNNNTGC 2 cut(s) 567, 601
BciVI GTATCC 1 cut(s) 652
BcnI CCSGG 5 cut(s) 44, 413, 554, 555, 740
BcoDI GTCTC 5 cut(s) 29, 1649, 2412, 3669, 3873
BfaI CTAG 6 cut(s) 573, 1920, 1943, 2124, 2637, 2721
BfmI CTRYAG 3 cut(s) 480, 1860, 1932
BfoI RGCGCY 2 cut(s) 564, 3133
BfrI CTTAAG 1 cut(s) 994
BfuAI ACCTGC 4 cut(s) 487, 569, 2317, 2446
BfuI GTATCC 1 cut(s) 652
BglI GCCNNNNNGGC 1 cut(s) 569
BglII AGATCT 2 cut(s) 1192, 3114
Bme18I GGWCC 9 cut(s) 86, 513, 835, 1090, 1717, 1829, 3149, 3335, 3383
BmeRI GACNNNNNGTC 3 cut(s) 337, 523, 3865
BmeT110I CYCGRG 3 cut(s) 553, 1196, 3306
BmgBI CACGTC 2 cut(s) 21, 2064
BmrI ACTGGG 3 cut(s) 672, 1974, 2398
BmuI ACTGGG 3 cut(s) 672, 1974, 2398
BpiI GAAGAC 4 cut(s) 158, 854, 1413, 1748
BpmI CTGGAG 3 cut(s) 1479, 2241, 3174
Bpu10I CCTNAGC 4 cut(s) 1112, 3190, 4101, 4107
BpuEI CTTGAG 4 cut(s) 1761, 2722, 3762, 3810
BpuMI CCSGG 5 cut(s) 44, 413, 554, 555, 740
Bsa29I ATCGAT 1 cut(s) 1029
BsaAI YACGTR 3 cut(s) 14, 51, 2954
BsaHI GRCGYC 5 cut(s) 163, 338, 363, 621, 3130
BsaWI WCCGGW 1 cut(s) 1759
BsaXI ACNNNNNCTCC 2 cut(s) 1545, 1575
Bse118I RCCGGY 4 cut(s) 538, 599, 717, 2578
Bse3DI GCAATG 1 cut(s) 1727
BseAI TCCGGA 1 cut(s) 1759
BseCI ATCGAT 1 cut(s) 1029
BseMI GCAATG 1 cut(s) 1727
BsePI GCGCGC 1 cut(s) 1118
BseRI GAGGAG 4 cut(s) 1535, 2639, 2719, 2902
BseSI GKGCMC 4 cut(s) 100, 1750, 2519, 3313
BseYI CCCAGC 1 cut(s) 2393
BsgI GTGCAG 1 cut(s) 1497
Bsh1236I CGCG 5 cut(s) 60, 423, 1120, 2785, 3444
BshNI GGYRCC 3 cut(s) 3129, 3263, 3310
BshVI ATCGAT 1 cut(s) 1029
BsiHKAI GWGCWC 8 cut(s) 1135, 1750, 1767, 1918, 2797, 2959, 3460, 3787
BsiHKCI CYCGRG 3 cut(s) 553, 1196, 3306
BsmAI GTCTC 5 cut(s) 29, 1649, 2412, 3669, 3873
BsmBI CGTCTC 1 cut(s) 29
BsmI GAATGC 3 cut(s) 905, 2300, 2475
BsoBI CYCGRG 3 cut(s) 553, 1196, 3306
Bsp13I TCCGGA 1 cut(s) 1759
Bsp1407I TGTACA 3 cut(s) 2082, 2608, 3280
Bsp19I CCATGG 3 cut(s) 303, 1573, 3651
Bsp68I TCGCGA 1 cut(s) 2785
BspDI ATCGAT 1 cut(s) 1029
BspEI TCCGGA 1 cut(s) 1759
BspFNI CGCG 5 cut(s) 60, 423, 1120, 2785, 3444
BspMAI CTGCAG 2 cut(s) 484, 1864
BspMI ACCTGC 4 cut(s) 487, 569, 2317, 2446
BspPI GGATC 5 cut(s) 1034, 2219, 2918, 3709, 3898
BspT107I GGYRCC 3 cut(s) 3129, 3263, 3310
BspTI CTTAAG 1 cut(s) 994
BsrDI GCAATG 1 cut(s) 1727
BsrFI RCCGGY 4 cut(s) 538, 599, 717, 2578
BsrGI TGTACA 3 cut(s) 2082, 2608, 3280
BssAI RCCGGY 4 cut(s) 538, 599, 717, 2578
BssHII GCGCGC 1 cut(s) 1118
BssNI GRCGYC 5 cut(s) 163, 338, 363, 621, 3130
BssSI CACGAG 3 cut(s) 2388, 3044, 3366
BssT1I CCWWGG 4 cut(s) 303, 1573, 2573, 3651
Bst2BI CACGAG 3 cut(s) 2388, 3044, 3366
Bst4CI ACNGT 9 cut(s) 488, 494, 911, 1852, 2082, 2745, 3012, 3173, 3351
Bst6I CTCTTC 3 cut(s) 200, 223, 1595
BstACI GRCGYC 5 cut(s) 163, 338, 363, 621, 3130
BstAFI CTTAAG 1 cut(s) 994
BstAPI GCANNNNNTGC 1 cut(s) 2390
BstAUI TGTACA 3 cut(s) 2082, 2608, 3280
BstBAI YACGTR 3 cut(s) 14, 51, 2954
BstDSI CCRYGG 5 cut(s) 303, 493, 1573, 3328, 3651
BstENI CCTNNNNNAGG 1 cut(s) 1839
BstFNI CGCG 5 cut(s) 60, 423, 1120, 2785, 3444
BstH2I RGCGCY 2 cut(s) 564, 3133
BstHHI GCGC 5 cut(s) 60, 563, 1120, 1122, 3132
BstMAI GTCTC 5 cut(s) 29, 1649, 2412, 3669, 3873
BstNSI RCATGY 7 cut(s) 713, 1499, 2211, 3664, 3710, 3883, 3967
BstSFI CTRYAG 3 cut(s) 480, 1860, 1932
BstSLI GKGCMC 4 cut(s) 100, 1750, 2519, 3313
BstUI CGCG 5 cut(s) 60, 423, 1120, 2785, 3444
BstV2I GAAGAC 4 cut(s) 158, 854, 1413, 1748
BstX2I RGATCY 3 cut(s) 1192, 2224, 3114
BstXI CCANNNNNNTGG 2 cut(s) 3275, 4148
BstYI RGATCY 3 cut(s) 1192, 2224, 3114
Bsu15I ATCGAT 1 cut(s) 1029
BsuI GTATCC 1 cut(s) 652
BsuTUI ATCGAT 1 cut(s) 1029
BtgI CCRYGG 5 cut(s) 303, 493, 1573, 3328, 3651
BtgZI GCGATG 1 cut(s) 2145
BtrI CACGTC 2 cut(s) 21, 2064
BtsI GCAGTG 3 cut(s) 1082, 1653, 2347
BtsIMutI CAGTG 9 cut(s) 1046, 1082, 1135, 1494, 1588, 1653, 2150, 2347, 3008
BtuMI TCGCGA 1 cut(s) 2785
BveI ACCTGC 4 cut(s) 487, 569, 2317, 2446
CaiI CAGNNNCTG 1 cut(s) 3010
CfoI GCGC 5 cut(s) 60, 563, 1120, 1122, 3132
Cfr10I RCCGGY 4 cut(s) 538, 599, 717, 2578
Cfr9I CCCGGG 1 cut(s) 553
ClaI ATCGAT 1 cut(s) 1029
CseI GACGC 6 cut(s) 46, 49, 327, 371, 522, 3450
CsiI ACCWGGT 4 cut(s) 831, 1429, 1750, 2043
CspCI CAANNNNNGTGG 2 cut(s) 63, 98
DinI GGCGCC 1 cut(s) 3131
DraI TTTAAA 1 cut(s) 3691
DraIII CACNNNGTG 1 cut(s) 3791
DriI GACNNNNNGTC 3 cut(s) 337, 523, 3865
EaeI YGGCCR 3 cut(s) 2235, 2576, 3196
Eam1104I CTCTTC 3 cut(s) 200, 223, 1595
Eam1105I GACNNNNNGTC 3 cut(s) 337, 523, 3865
EarI CTCTTC 3 cut(s) 200, 223, 1595
Ecl136II GAGCTC 1 cut(s) 1765
Eco130I CCWWGG 4 cut(s) 303, 1573, 2573, 3651
Eco147I AGGCCT 1 cut(s) 3900
Eco24I GRGCYC 2 cut(s) 318, 1767
Eco32I GATATC 1 cut(s) 3296
Eco47I GGWCC 9 cut(s) 86, 513, 835, 1090, 1717, 1829, 3149, 3335, 3383
Eco53kI GAGCTC 1 cut(s) 1765
Eco57I CTGAAG 6 cut(s) 444, 1564, 1787, 2174, 2541, 3098
Eco72I CACGTG 2 cut(s) 51, 2954
Eco88I CYCGRG 3 cut(s) 553, 1196, 3306
EcoICRI GAGCTC 1 cut(s) 1765
EcoNI CCTNNNNNAGG 1 cut(s) 1839
EcoO109I RGGNCCY 5 cut(s) 86, 1090, 3062, 3335, 4063
EcoRI GAATTC 1 cut(s) 380
EcoRV GATATC 1 cut(s) 3296
EcoT14I CCWWGG 4 cut(s) 303, 1573, 2573, 3651
EcoT22I ATGCAT 3 cut(s) 1009, 1774, 2475
EcoT38I GRGCYC 2 cut(s) 318, 1767
EgeI GGCGCC 1 cut(s) 3131
EheI GGCGCC 1 cut(s) 3131
ErhI CCWWGG 4 cut(s) 303, 1573, 2573, 3651
Esp3I CGTCTC 1 cut(s) 29
FalI AAGNNNNNCTT 4 cut(s) 846, 878, 2539, 2571
FauI CCCGC 2 cut(s) 2151, 3649
FauNDI CATATG 1 cut(s) 3954
FblI GTMKAC 4 cut(s) 1935, 2273, 2282, 3521
FriOI GRGCYC 2 cut(s) 318, 1767
FspBI CTAG 6 cut(s) 573, 1920, 1943, 2124, 2637, 2721
GlaI GCGC 5 cut(s) 59, 562, 1119, 1121, 3131
GsaI CCCAGC 1 cut(s) 2397
GsuI CTGGAG 3 cut(s) 1479, 2241, 3174
HaeII RGCGCY 2 cut(s) 564, 3133
HgaI GACGC 6 cut(s) 46, 49, 327, 371, 522, 3450
HhaI GCGC 5 cut(s) 60, 563, 1120, 1122, 3132
Hin1I GRCGYC 5 cut(s) 163, 338, 363, 621, 3130
Hin6I GCGC 5 cut(s) 58, 561, 1118, 1120, 3130
HinP1I GCGC 5 cut(s) 58, 561, 1118, 1120, 3130
HincII GTYRAC 4 cut(s) 619, 1509, 1588, 3027
HindII GTYRAC 4 cut(s) 619, 1509, 1588, 3027
HindIII AAGCTT 1 cut(s) 1638
HpaI GTTAAC 1 cut(s) 1509
HphI GGTGA 7 cut(s) 161, 228, 821, 1445, 2527, 3312, 3692
Hpy99I CGWCG 6 cut(s) 25, 165, 343, 365, 538, 1740
HpyCH4III ACNGT 9 cut(s) 488, 494, 911, 1852, 2082, 2745, 3012, 3173, 3351
Hsp92I GRCGYC 5 cut(s) 163, 338, 363, 621, 3130
HspAI GCGC 5 cut(s) 58, 561, 1118, 1120, 3130
KasI GGCGCC 1 cut(s) 3129
KflI GGGWCCC 1 cut(s) 86
Kpn2I TCCGGA 1 cut(s) 1759
KpnI GGTACC 1 cut(s) 3267
KroI GCCGGC 1 cut(s) 599
KroNI GCCGGC 1 cut(s) 601
KspAI GTTAAC 1 cut(s) 1509
LmnI GCTCC 9 cut(s) 313, 1105, 1762, 1921, 2287, 3371, 3392, 3463, 3782
MabI ACCWGGT 4 cut(s) 831, 1429, 1750, 2043
MaeI CTAG 6 cut(s) 573, 1920, 1943, 2124, 2637, 2721
MfeI CAATTG 3 cut(s) 1866, 2096, 3462
MflI RGATCY 3 cut(s) 1192, 2224, 3114
MlsI TGGCCA 2 cut(s) 2237, 3198
MluNI TGGCCA 2 cut(s) 2237, 3198
Mly113I GGCGCC 1 cut(s) 3130
MlyI GAGTC 3 cut(s) 134, 2279, 2541
MmeI TCCRAC 4 cut(s) 540, 2320, 3370, 3386
Mox20I TGGCCA 2 cut(s) 2237, 3198
Mph1103I ATGCAT 3 cut(s) 1009, 1774, 2475
MroI TCCGGA 1 cut(s) 1759
MroNI GCCGGC 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 3860
MscI TGGCCA 2 cut(s) 2237, 3198
MslI CAYNNNNRTG 1 cut(s) 4146
Msp20I TGGCCA 2 cut(s) 2237, 3198
MspA1I CMGCKG 1 cut(s) 3194
MspCI CTTAAG 1 cut(s) 994
MunI CAATTG 3 cut(s) 1866, 2096, 3462
Mva1269I GAATGC 3 cut(s) 905, 2300, 2475
MvnI CGCG 5 cut(s) 60, 423, 1120, 2785, 3444
NaeI GCCGGC 1 cut(s) 601
NarI GGCGCC 1 cut(s) 3130
NciI CCSGG 5 cut(s) 44, 413, 554, 555, 740
NcoI CCATGG 3 cut(s) 303, 1573, 3651
NdeI CATATG 1 cut(s) 3954
NgoMIV GCCGGC 1 cut(s) 599
NmuCI GTSAC 7 cut(s) 46, 488, 1342, 1852, 2533, 2689, 3680
NruI TCGCGA 1 cut(s) 2785
NsiI ATGCAT 3 cut(s) 1009, 1774, 2475
NspI RCATGY 7 cut(s) 713, 1499, 2211, 3664, 3710, 3883, 3967
PaeR7I CTCGAG 1 cut(s) 1196
PalAI GGCGCGCC 1 cut(s) 1118
PaqCI CACCTGC 1 cut(s) 569
PasI CCCWGGG 1 cut(s) 391
PauI GCGCGC 1 cut(s) 1118
PceI AGGCCT 1 cut(s) 3900
PciI ACATGT 4 cut(s) 1495, 2207, 3706, 3963
PcsI WCGNNNNNNNCGW 1 cut(s) 678
PctI GAATGC 3 cut(s) 905, 2300, 2475
PdiI GCCGGC 1 cut(s) 601
PdmI GAANNNNTTC 1 cut(s) 3860
PfeI GAWTC 8 cut(s) 308, 430, 464, 826, 1322, 2302, 2840, 2913
PflFI GACNNNGTC 2 cut(s) 1340, 1592
PflMI CCANNNNNTGG 4 cut(s) 1231, 3260, 3368, 3569
PfoI TCCNGGA 1 cut(s) 3151
PleI GAGTC 3 cut(s) 134, 2278, 2540
PluTI GGCGCC 1 cut(s) 3133
PmaCI CACGTG 2 cut(s) 51, 2954
PmlI CACGTG 2 cut(s) 51, 2954
PpsI GAGTC 3 cut(s) 134, 2278, 2540
Ppu21I YACGTR 3 cut(s) 14, 51, 2954
PpuMI RGGWCCY 3 cut(s) 86, 1090, 3335
PscI ACATGT 4 cut(s) 1495, 2207, 3706, 3963
PsiI TTATAA 2 cut(s) 2814, 3717
Psp124BI GAGCTC 1 cut(s) 1767
Psp5II RGGWCCY 3 cut(s) 86, 1090, 3335
PspCI CACGTG 2 cut(s) 51, 2954
PspFI CCCAGC 1 cut(s) 2393
PspPPI RGGWCCY 3 cut(s) 86, 1090, 3335
PsrI GAACNNNNNNTAC 2 cut(s) 3998, 4030
PstI CTGCAG 2 cut(s) 484, 1864
PstNI CAGNNNCTG 1 cut(s) 3010
PsuI RGATCY 3 cut(s) 1192, 2224, 3114
PsyI GACNNNGTC 2 cut(s) 1340, 1592
PteI GCGCGC 1 cut(s) 1118
PvuII CAGCTG 1 cut(s) 3194
RruI TCGCGA 1 cut(s) 2785
RseI CAYNNNNRTG 1 cut(s) 4146
SacI GAGCTC 1 cut(s) 1767
SchI GAGTC 3 cut(s) 134, 2279, 2541
SexAI ACCWGGT 4 cut(s) 831, 1429, 1750, 2043
SfcI CTRYAG 3 cut(s) 480, 1860, 1932
SfoI GGCGCC 1 cut(s) 3131
Sfr274I CTCGAG 1 cut(s) 1196
SgsI GGCGCGCC 1 cut(s) 1118
SinI GGWCC 9 cut(s) 86, 513, 835, 1090, 1717, 1829, 3149, 3335, 3383
SlaI CTCGAG 1 cut(s) 1196
SmaI CCCGGG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 4146
SmlI CTYRAG 6 cut(s) 994, 1196, 1776, 2701, 3777, 3825
SmoI CTYRAG 6 cut(s) 994, 1196, 1776, 2701, 3777, 3825
SseBI AGGCCT 1 cut(s) 3900
SspDI GGCGCC 1 cut(s) 3129
SspI AATATT 1 cut(s) 70
SspMI CTAG 6 cut(s) 573, 1920, 1943, 2124, 2637, 2721
SstI GAGCTC 1 cut(s) 1767
StuI AGGCCT 1 cut(s) 3900
StyI CCWWGG 4 cut(s) 303, 1573, 2573, 3651
TaaI ACNGT 9 cut(s) 488, 494, 911, 1852, 2082, 2745, 3012, 3173, 3351
TaqI TCGA 8 cut(s) 378, 734, 775, 1029, 1197, 1824, 2959, 3841
TatI WGTACW 5 cut(s) 1604, 2082, 2608, 3280, 4014
TauI GCSGC 2 cut(s) 729, 1447
TfiI GAWTC 8 cut(s) 308, 430, 464, 826, 1322, 2302, 2840, 2913
TscAI CASTG 9 cut(s) 1046, 1082, 1135, 1494, 1588, 1653, 2157, 2354, 3015
TseFI GTSAC 7 cut(s) 46, 488, 1342, 1852, 2533, 2689, 3680
Tsp45I GTSAC 7 cut(s) 46, 488, 1342, 1852, 2533, 2689, 3680
TspGWI ACGGA 5 cut(s) 152, 1709, 2240, 2300, 3345
TspMI CCCGGG 1 cut(s) 553
TspRI CASTG 9 cut(s) 1046, 1082, 1135, 1494, 1588, 1653, 2157, 2354, 3015
Tth111I GACNNNGTC 2 cut(s) 1340, 1592
Van91I CCANNNNNTGG 4 cut(s) 1231, 3260, 3368, 3569
Vha464I CTTAAG 1 cut(s) 994
VneI GTGCAC 1 cut(s) 1746
VpaK11BI GGWCC 9 cut(s) 86, 513, 835, 1090, 1717, 1829, 3149, 3335, 3383
XagI CCTNNNNNAGG 1 cut(s) 1839
XapI RAATTY 3 cut(s) 380, 2489, 3671
XceI RCATGY 7 cut(s) 713, 1499, 2211, 3664, 3710, 3883, 3967
XcmI CCANNNNNNNNNTGG 1 cut(s) 3566
XhoI CTCGAG 1 cut(s) 1196
XmaI CCCGGG 1 cut(s) 553
XmiI GTMKAC 4 cut(s) 1935, 2273, 2282, 3521
XmnI GAANNNNTTC 1 cut(s) 3860
XspI CTAG 6 cut(s) 573, 1920, 1943, 2124, 2637, 2721
ZraI GACGTC 2 cut(s) 164, 622
Zsp2I ATGCAT 3 cut(s) 1009, 1774, 2475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.