RLG00000003268

Regulator of nonsense transcripts 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009459
Physical Location & Seq
Forward (+)
46361140 .. 46372248
11109 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003268

Sequence Viewer

Length: 3513 bp
ATGGAATCCCAGCCGAACAACCTCTTCGACACGGCGTCGCAGCCGGACACGGCCACCGACGCCTACACTTTTCTCGAATTCAACACCCAGGGCGAGGACTTCGACTACCCGGAGTTTCGCGACCCGATTCGCTCCCCGGTGGCCTGGCCCACGCCGTCCGATTCCTTATCGGACCCTGCCGACCGCGACCGCGGCGGAGGAGGTGGTGGTGGTGGCTCCGACCACCAGTCTGATGCGTCGCCTGTTTCGGCTGCCCCGGGCAGTGCCACCAAGGCCCGGGCCGGTGGCTCGGGCAGTAGCGGCGGGAATAATAATCAGGTGGTTGACGCCCTAGCGTCTGGGATGAGTGTGCTGAACTTTGAGGACACTGGGGATGATGATAGCTATGAGTTTGGAAAGGGAGATTTCACTGAGCATGCGTGCCGGTACTGCGGAGTGTCGAACCCAGCGTGCGTTGTGAGGTGTAACGTGCCGTCGTGCCGGAAGTGGTTTTGTAATTCCAGGGGGAACACATCCGGCTCTCATATTGTGAATCACCTGGTTCGTGCAAAACACAAGGAAGTCTGTCTTCATAAAGATAGCCCATTAGGAGAAACAATCCTTGAGTGCTACAACTGTGGATGCCGCAATGTATTCCTTCTTGGATTTATTTCAGCCAAGACAGAGAGTGTTGTTGTTCTTCTCTGTAGGGAACCCTGCTTAAGTGTTAATGCATTGAAGGATATGAACTGGGACCTGAGCCAGTGGTGTCCCCTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTTAAGGTTCCCTCCGAACAGGAGCAGCTGAGGGCACGCCAGATTAGTGCTCAACAAATAAACAAGGTAGAAGAACTCTGGAAGTCAAATCCTGATGCTTCCCTTGAAGATCTTGAGAAGCCTGGTGTGGATGATGAACCCCAACCTGTGGCCGTAAAGTATGAGGATGCGTACCAGTATCAAAATGTGTTTGCACCACTTATCAAGCTTGAAGCTGACTATGATAAAATGATGAAAGAATCTCAAAGCAAGGACAATCTCACCATTAGGTATATTTACCATCACTTGTTAGGCCATGAAGTAGAGGTTCAGATGGTCCGTAATACACTGCCTCGTCGTTTTGGTGCACCTGGTCTGCCAGAGCTCAATGCATCTCAGGTTTTTGCTGTGAAAAGTGTTCTTCAGAAGCCTATAAGTTTGATTCAAGGTCCACCTGGCACAGGAAAAACTGTCACTTCTGCAGCAATTGTGTATCACATGGCTAAACAAGGCCAGGGACAGGTCTTGGTTTGCGCTCCTAGTAATGTGGCTGTCGACCAACTAGCTGAAAAAATAAGTGCAACTGGGCTGAAGGTTGTTAGACTTTGTGCAAAATCAAGGGAAGCTGTCAGCTCTCCTGTTGAGCATTTAACCCTTCACTATCAGGTTCGTCATCTTGACACATCAGAAAAGAGTGAACTTCACAAGTTACAGCAATTGAAGGATGAGCAAGGTGAATTGTCAAGTAGTGATGAGAAAAAGTACAAAGCGCTGAAGCGGGCAACTGAGAGAGAGATTTCTCAGAGTGCTGATGTCATTTGTTGCACATGTGTTGGTGCTGGAGATCCTCGATTGGCGAATTTTAGGTTCCGTCAGGTACTTATTGATGAGTCTACTCAGGCAACAGAGCCTGAATGCCTTATTCCTTTGGTACTAGGGGCAAAGCAGGTTGTTTTGGTTGGTGATCACTGCCAGCTTGGTCCAGTCATTATGTGCAAGAAAGCAGCTCGTGCTGGGCTTGCCCAGTCTCTTTTTGAACGCCTTGTTTTACTTGGTGTGAAACCAATTAGGTTGCAGGTCCAATACAGAATGCATCCAGCCTTGTCAGAATTTCCTTCCAACAGCTTCTATGAGGGAACACTCCAAAATGGCGTCACCATCAATGAAAGGCAATCAACAGGAATTGATTTTCCATGGCCAGTTCCCAATCGTCCCATGTTCTTTTATGTTCAGATGGGCCAAGAGGAGATAAGTGCTAGCGGAACATCTTACCTGAACAGAACTGAAGCTGCTAATGTTGAAAAGATTGTCACAACATTCTTAAGGAGTGGTGTCGTACCTAGTCAGATCGGGGTGATAACACCATATGAGGGACAGCGAGCATATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAACTTTATAAGGAAATAGAGGTCGCAAGTGTAGATTCATTTCAAGGAAGGGAAAAAGATTATATCATCCTTTCATGTGTGAGGAGTAATGAGCATCAGGGCATTGGATTCCTTAACGACCCTCGGAGGCTCAATGTTGCCCTAACACGTGCTCGATATGGTATTGTTATTCTGGGGAACCCTAAAGTTCTAAGTAAGCAGCCCTTGTGGAATAGCTTGTTGACGCACTACAAGGAACATGAGTGCTTGGTCGAAGGTCCTCTAAATAACTTGAAGCAGAGTATGGTTCAATTTCCAAAGCCCAAAAAGATCTACAATGATCGGCGTCTGTTCTTTGGTGGTGGTCCTGGAGTTGTCCCAAGTGATAGTTATGGGTCTATTCCCCCATCCAGTCAGAGTGCTGATAGAAGAAGTGGTCGTGGTAGGGGCTCTTTCCTACCTCCTGGTCCACCGAATGGTACCCACAAGCCTGGGGTACATCCTGCTGGATATCCAATGCCTCGGGCACCACTTGCACCATTTCATGGTGGTCCCCTTTCTCAACCCTATGCTATTCCAACTCGTGGAGCTGTGCATGGACCAGTAGGAGCTGTTCCTCATGTCCCTCAACCTGGAAGTCGAGGTTTTGGAGCTGGACGTGGCAGTGCTGGTGCTCCTATTGGCAGTCATCTCCAACACCAGCAAGGCACACAGCAGAATGTAGGAAATCTGGGGTCTAACTTTAACTTTCCTGCTCTGGAAAATCCTAATAGTCAGCCATCTGTGGGCGGTCCATTATCTCAACCTGGATTTGTCAATAATATGCCAGTTCAAGGGCCAAGCCAAACATTTCGTGATGGATTTTCCATGGCGGGCATGTCTCAGGAGTTCTTGGGTGATGACTTTAAAAGTCAGGGATCTCATGTTCCTTATAACGTCGCTGACTTTTCCACTCAGGCCTCTCAAAGTGGATATGCTGTTGATTATGTTACACAAGGAGCGCAAGGAGGATTTCCAGGCAATTTTATAAACCAGAATTCTCAAGCAGGGTACTCTCGATTTGGTACAGGGAATGACTTCATGTCTCAGGACTACATGGCTCATGGTACACAAGGTCTATTTACCCAGGTGGGCTACAATGACCCATCACAGGATGATGGATCGCAGAACCACTATGGAGTAGGGAATGCTAATGCGCTCCAGTCTCAGGGATATATGAATTCTCTGTACTCCCAACCTTTTACCCACTACAACACACAGCCAATGAACTTGCAGGCCCCACAACAGCAGCCGCCTCAGCAGGGTCAGAGCTCCCAAAATCAGAAGATTCACTACAATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000932 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009743 GO:0009751 GO:0009753 GO:0009755 GO:0009756 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010182 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0030054 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035690 GO:0035770 GO:0036464 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046677 GO:0046700 GO:0048519 GO:0048571 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
AAA_11 AAA_12 ResIII UPF1_Zn_bind

Protein Analysis

1171

Amino Acids

127.71

Weight (kDa)

6.47

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF1_Zn_bind PF09416 139 - 292 7.9e-73 RNA helicase (UPF2 interacting domain)
AAA_11 PF13086 383 - 503 1.8e-23 AAA domain
AAA_30 PF13604 383 - 584 4.9e-14 AAA domain
ResIII PF04851 383 - 453 4.4e-06 Type III restriction enzyme, res subunit
AAA_19 PF13245 390 - 584 3e-11 AAA domain
AAA_11 PF13086 485 - 586 9e-29 AAA domain
AAA_12 PF13087 595 - 791 1e-61 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 2199, 3102, 3197
Acc36I ACCTGC 2 cut(s) 1702, 1831
Acc65I GGTACC 1 cut(s) 2648
AccB1I GGYRCC 2 cut(s) 2648, 2695
AccB7I CCANNNNNTGG 4 cut(s) 934, 2645, 2714, 2753
AccI GTMKAC 2 cut(s) 1320, 1658
AccII CGCG 3 cut(s) 120, 186, 192
AclWI GGATC 3 cut(s) 1604, 3094, 3337
AcoI YGGCCR 3 cut(s) 51, 936, 1961
AcsI RAATTY 5 cut(s) 77, 1624, 1874, 3205, 3388
AcuI CTGAAG 4 cut(s) 1172, 1376, 1559, 2070
AcvI CACGTG 1 cut(s) 2339
AcyI GRCGYC 5 cut(s) 35, 60, 327, 1917, 2515
AfeI AGCGCT 1 cut(s) 1536
AflII CTTAAG 2 cut(s) 700, 2086
AflIII ACRYGT 2 cut(s) 1592, 2336
AhdI GACNNNNNGTC 3 cut(s) 34, 226, 3250
AjiI CACGTC 1 cut(s) 2828
AloI GAACNNNNNNTCC 2 cut(s) 3078, 3110
Alw21I GWGCWC 7 cut(s) 838, 1135, 1152, 2182, 2344, 2845, 3482
Alw26I GTCTC 4 cut(s) 1797, 3054, 3258, 3378
Alw44I GTGCAC 1 cut(s) 1131
AlwI GGATC 3 cut(s) 1604, 3094, 3337
AlwNI CAGNNNCTG 1 cut(s) 1676
Ama87I CYCGRG 4 cut(s) 256, 276, 289, 2691
Aor51HI AGCGCT 1 cut(s) 1536
ApaLI GTGCAC 1 cut(s) 1131
ApeKI GCWGC 9 cut(s) 40, 251, 811, 1247, 1769, 2054, 2188, 2389, 3457
ApoI RAATTY 5 cut(s) 77, 1624, 1874, 3205, 3388
Asp700I GAANNNNTTC 1 cut(s) 3245
Asp718I GGTACC 1 cut(s) 2648
AspLEI GCGC 4 cut(s) 1301, 1537, 3172, 3367
AsuC2I CCSGG 6 cut(s) 110, 137, 257, 258, 277, 278
AsuHPI GGTGA 7 cut(s) 527, 1039, 1511, 1739, 1912, 2131, 3077
AsuNHI GCTAGC 1 cut(s) 2021
AvaI CYCGRG 4 cut(s) 256, 276, 289, 2691
BaeGI GKGCMC 3 cut(s) 823, 1135, 2698
BalI TGGCCA 1 cut(s) 1963
BanI GGYRCC 2 cut(s) 2648, 2695
BanII GRGCYC 3 cut(s) 1152, 2621, 3482
BarI GAAGNNNNNNTAC 1 cut(s) 3485
BauI CACGAG 2 cut(s) 1773, 2751
BbrPI CACGTG 1 cut(s) 2339
BbsI GAAGAC 1 cut(s) 560
Bbv12I GWGCWC 7 cut(s) 838, 1135, 1152, 2182, 2344, 2845, 3482
BbvCI CCTCAGC 2 cut(s) 815, 3465
BbvI GCAGC 9 cut(s) 52, 238, 823, 1259, 1781, 2041, 2200, 2401, 3469
BccI CCATC 9 cut(s) 1074, 1093, 1931, 1993, 2584, 2956, 3020, 3320, 3322
BceAI ACGGC 5 cut(s) 48, 66, 139, 457, 923
BclI TGATCA 1 cut(s) 1729
BcnI CCSGG 6 cut(s) 110, 137, 257, 258, 277, 278
BcoDI GTCTC 4 cut(s) 1797, 3054, 3258, 3378
BfaI CTAG 6 cut(s) 332, 1305, 1328, 1700, 2022, 2106
BfmI CTRYAG 2 cut(s) 685, 1245
BfoI RGCGCY 1 cut(s) 1538
BfrI CTTAAG 2 cut(s) 700, 2086
BfuAI ACCTGC 2 cut(s) 1702, 1831
BglI GCCNNNNNGGC 1 cut(s) 272
BglII AGATCT 2 cut(s) 895, 2499
BmeRI GACNNNNNGTC 3 cut(s) 34, 226, 3250
BmeT110I CYCGRG 4 cut(s) 256, 276, 289, 2691
BmgBI CACGTC 1 cut(s) 2828
BmrI ACTGGG 4 cut(s) 378, 739, 1359, 1783
BmsI GCATC 7 cut(s) 223, 611, 871, 943, 1166, 1867, 2293
BmtI GCTAGC 1 cut(s) 2025
BmuI ACTGGG 4 cut(s) 378, 739, 1359, 1783
BpiI GAAGAC 1 cut(s) 560
BpmI CTGGAG 3 cut(s) 1626, 2559, 3353
Bpu10I CCTNAGC 3 cut(s) 737, 815, 3465
BpuEI CTTGAG 3 cut(s) 623, 920, 3195
BpuMI CCSGG 6 cut(s) 110, 137, 257, 258, 277, 278
BsaAI YACGTR 1 cut(s) 2339
BsaHI GRCGYC 5 cut(s) 35, 60, 327, 1917, 2515
Bse118I RCCGGY 2 cut(s) 281, 423
Bse3DI GCAATG 1 cut(s) 634
BseMI GCAATG 1 cut(s) 634
BseRI GAGGAG 3 cut(s) 213, 2024, 2287
BseSI GKGCMC 3 cut(s) 823, 1135, 2698
BseXI GCAGC 9 cut(s) 52, 238, 823, 1259, 1781, 2041, 2200, 2401, 3469
BseYI CCCAGC 3 cut(s) 9, 445, 1778
Bsh1236I CGCG 3 cut(s) 120, 186, 192
Bsh1285I CGRYCG 2 cut(s) 184, 190
BshNI GGYRCC 2 cut(s) 2648, 2695
BsiEI CGRYCG 2 cut(s) 184, 190
BsiHKAI GWGCWC 7 cut(s) 838, 1135, 1152, 2182, 2344, 2845, 3482
BsiHKCI CYCGRG 4 cut(s) 256, 276, 289, 2691
BsiSI CCGG 9 cut(s) 44, 110, 137, 257, 277, 282, 424, 481, 516
BslFI GGGAC 8 cut(s) 735, 746, 1296, 1962, 2151, 2531, 2706, 2777
BsmAI GTCTC 4 cut(s) 1797, 3054, 3258, 3378
BsmFI GGGAC 8 cut(s) 735, 746, 1296, 1962, 2151, 2531, 2706, 2777
BsmI GAATGC 3 cut(s) 1685, 1860, 3361
BsoBI CYCGRG 4 cut(s) 256, 276, 289, 2691
Bsp143I GATC 8 cut(s) 895, 1609, 1729, 2112, 2499, 2509, 3086, 3329
Bsp19I CCATGG 2 cut(s) 1958, 3036
Bsp68I TCGCGA 1 cut(s) 120
BspFNI CGCG 3 cut(s) 120, 186, 192
BspMAI CTGCAG 1 cut(s) 1249
BspMI ACCTGC 2 cut(s) 1702, 1831
BspOI GCTAGC 1 cut(s) 2025
BspPI GGATC 3 cut(s) 1604, 3094, 3337
BspT107I GGYRCC 2 cut(s) 2648, 2695
BspTI CTTAAG 2 cut(s) 700, 2086
BsrDI GCAATG 1 cut(s) 634
BsrFI RCCGGY 2 cut(s) 281, 423
BssAI RCCGGY 2 cut(s) 281, 423
BssMI GATC 8 cut(s) 895, 1609, 1729, 2112, 2499, 2509, 3086, 3329
BssNI GRCGYC 5 cut(s) 35, 60, 327, 1917, 2515
BssSI CACGAG 2 cut(s) 1773, 2751
BssT1I CCWWGG 3 cut(s) 270, 1958, 3036
Bst2BI CACGAG 2 cut(s) 1773, 2751
Bst4CI ACNGT 2 cut(s) 617, 1237
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 5 cut(s) 35, 60, 327, 1917, 2515
BstAFI CTTAAG 2 cut(s) 700, 2086
BstAPI GCANNNNNTGC 2 cut(s) 1775, 2702
BstBAI YACGTR 1 cut(s) 2339
BstDSI CCRYGG 3 cut(s) 190, 1958, 3036
BstENI CCTNNNNNAGG 1 cut(s) 1224
BstFNI CGCG 3 cut(s) 120, 186, 192
BstH2I RGCGCY 1 cut(s) 1538
BstHHI GCGC 4 cut(s) 1301, 1537, 3172, 3367
BstKTI GATC 8 cut(s) 898, 1612, 1732, 2115, 2502, 2512, 3089, 3332
BstMAI GTCTC 4 cut(s) 1797, 3054, 3258, 3378
BstMBI GATC 8 cut(s) 895, 1609, 1729, 2112, 2499, 2509, 3086, 3329
BstMCI CGRYCG 2 cut(s) 184, 190
BstMWI GCNNNNNNNGC 9 cut(s) 59, 192, 272, 300, 429, 1775, 1784, 2702, 3466
BstNSI RCATGY 3 cut(s) 419, 1596, 3049
BstSFI CTRYAG 2 cut(s) 685, 1245
BstSLI GKGCMC 3 cut(s) 823, 1135, 2698
BstUI CGCG 3 cut(s) 120, 186, 192
BstV1I GCAGC 9 cut(s) 52, 238, 823, 1259, 1781, 2041, 2200, 2401, 3469
BstV2I GAAGAC 1 cut(s) 560
BstX2I RGATCY 4 cut(s) 895, 1609, 2499, 3086
BstXI CCANNNNNNTGG 1 cut(s) 2660
BstYI RGATCY 4 cut(s) 895, 1609, 2499, 3086
BtgI CCRYGG 3 cut(s) 190, 1958, 3036
BtrI CACGTC 1 cut(s) 2828
BtsI GCAGTG 5 cut(s) 268, 785, 1112, 1732, 2839
BtsIMutI CAGTG 8 cut(s) 268, 366, 408, 749, 785, 1112, 1732, 2839
BtuMI TCGCGA 1 cut(s) 120
BveI ACCTGC 2 cut(s) 1702, 1831
CaiI CAGNNNCTG 1 cut(s) 1676
CfoI GCGC 4 cut(s) 1301, 1537, 3172, 3367
Cfr10I RCCGGY 2 cut(s) 281, 423
Cfr42I CCGCGG 1 cut(s) 193
Cfr9I CCCGGG 2 cut(s) 256, 276
CseI GACGC 8 cut(s) 24, 68, 225, 324, 335, 1906, 2422, 2504
CsiI ACCWGGT 2 cut(s) 537, 1135
DpnI GATC 8 cut(s) 897, 1611, 1731, 2114, 2501, 2511, 3088, 3331
DpnII GATC 8 cut(s) 895, 1609, 1729, 2112, 2499, 2509, 3086, 3329
DraI TTTAAA 1 cut(s) 3076
DriI GACNNNNNGTC 3 cut(s) 34, 226, 3250
EaeI YGGCCR 3 cut(s) 51, 936, 1961
Eam1104I CTCTTC 1 cut(s) 29
Eam1105I GACNNNNNGTC 3 cut(s) 34, 226, 3250
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 210
Ecl136II GAGCTC 2 cut(s) 1150, 3480
Eco130I CCWWGG 3 cut(s) 270, 1958, 3036
Eco147I AGGCCT 1 cut(s) 3128
Eco24I GRGCYC 3 cut(s) 1152, 2621, 3482
Eco32I GATATC 1 cut(s) 2681
Eco47III AGCGCT 1 cut(s) 1536
Eco53kI GAGCTC 2 cut(s) 1150, 3480
Eco57I CTGAAG 4 cut(s) 1172, 1376, 1559, 2070
Eco72I CACGTG 1 cut(s) 2339
Eco88I CYCGRG 4 cut(s) 256, 276, 289, 2691
EcoICRI GAGCTC 2 cut(s) 1150, 3480
EcoNI CCTNNNNNAGG 1 cut(s) 1224
EcoO109I RGGNCCY 3 cut(s) 733, 2447, 3445
EcoRI GAATTC 3 cut(s) 77, 3205, 3388
EcoRV GATATC 1 cut(s) 2681
EcoT14I CCWWGG 3 cut(s) 270, 1958, 3036
EcoT22I ATGCAT 3 cut(s) 715, 1159, 1860
EcoT38I GRGCYC 3 cut(s) 1152, 2621, 3482
ErhI CCWWGG 3 cut(s) 270, 1958, 3036
FalI AAGNNNNNCTT 4 cut(s) 552, 584, 2378, 2410
FaqI GGGAC 8 cut(s) 735, 746, 1296, 1962, 2151, 2531, 2706, 2777
FauI CCCGC 3 cut(s) 296, 1536, 3034
FauNDI CATATG 1 cut(s) 2131
FbaI TGATCA 1 cut(s) 1729
FblI GTMKAC 2 cut(s) 1320, 1658
FriOI GRGCYC 3 cut(s) 1152, 2621, 3482
FspBI CTAG 6 cut(s) 332, 1305, 1328, 1700, 2022, 2106
GlaI GCGC 4 cut(s) 1300, 1536, 3171, 3366
GsaI CCCAGC 3 cut(s) 13, 449, 1782
GsuI CTGGAG 3 cut(s) 1626, 2559, 3353
HaeII RGCGCY 1 cut(s) 1538
HapII CCGG 9 cut(s) 44, 110, 137, 257, 277, 282, 424, 481, 516
HgaI GACGC 8 cut(s) 24, 68, 225, 324, 335, 1906, 2422, 2504
HhaI GCGC 4 cut(s) 1301, 1537, 3172, 3367
Hin1I GRCGYC 5 cut(s) 35, 60, 327, 1917, 2515
Hin6I GCGC 4 cut(s) 1299, 1535, 3170, 3365
HinP1I GCGC 4 cut(s) 1299, 1535, 3170, 3365
HincII GTYRAC 3 cut(s) 325, 1321, 2412
HindII GTYRAC 3 cut(s) 325, 1321, 2412
HindIII AAGCTT 1 cut(s) 992
HpaII CCGG 9 cut(s) 44, 110, 137, 257, 277, 282, 424, 481, 516
HphI GGTGA 7 cut(s) 527, 1039, 1511, 1739, 1912, 2131, 3077
Hpy99I CGWCG 6 cut(s) 40, 62, 241, 478, 1125, 3110
HpyAV CCTTC 8 cut(s) 647, 712, 1351, 1430, 1480, 1890, 2232, 2438
HpyCH4III ACNGT 2 cut(s) 617, 1237
HpyCH4IV ACGT 4 cut(s) 468, 2338, 2827, 3105
HpyF10VI GCNNNNNNNGC 9 cut(s) 59, 192, 272, 300, 429, 1775, 1784, 2702, 3466
HpySE526I ACGT 4 cut(s) 468, 2338, 2827, 3105
Hsp92I GRCGYC 5 cut(s) 35, 60, 327, 1917, 2515
HspAI GCGC 4 cut(s) 1299, 1535, 3170, 3365
KpnI GGTACC 1 cut(s) 2652
Ksp22I TGATCA 1 cut(s) 1729
KspI CCGCGG 1 cut(s) 193
Kzo9I GATC 8 cut(s) 895, 1609, 1729, 2112, 2499, 2509, 3086, 3329
Lsp1109I GCAGC 9 cut(s) 52, 238, 823, 1259, 1781, 2041, 2200, 2401, 3469
LweI GCATC 7 cut(s) 223, 611, 871, 943, 1166, 1867, 2293
MabI ACCWGGT 2 cut(s) 537, 1135
MaeI CTAG 6 cut(s) 332, 1305, 1328, 1700, 2022, 2106
MaeII ACGT 4 cut(s) 468, 2338, 2827, 3105
MaeIII GTNAC 6 cut(s) 464, 1237, 1473, 1918, 2074, 3157
MalI GATC 8 cut(s) 897, 1611, 1731, 2114, 2501, 2511, 3088, 3331
MboI GATC 8 cut(s) 895, 1609, 1729, 2112, 2499, 2509, 3086, 3329
MboII GAAGA 8 cut(s) 16, 560, 671, 869, 905, 1178, 2610, 3505
MfeI CAATTG 2 cut(s) 1251, 1481
MflI RGATCY 4 cut(s) 895, 1609, 2499, 3086
MlsI TGGCCA 1 cut(s) 1963
MluNI TGGCCA 1 cut(s) 1963
MlyI GAGTC 1 cut(s) 1664
MmeI TCCRAC 4 cut(s) 243, 1908, 2771, 2887
Mox20I TGGCCA 1 cut(s) 1963
Mph1103I ATGCAT 3 cut(s) 715, 1159, 1860
MroXI GAANNNNTTC 1 cut(s) 3245
MscI TGGCCA 1 cut(s) 1963
MseI TTAA 9 cut(s) 701, 708, 789, 1415, 2087, 2304, 2913, 3075, 3511
MslI CAYNNNNRTG 1 cut(s) 3504
Msp20I TGGCCA 1 cut(s) 1963
MspA1I CMGCKG 2 cut(s) 192, 814
MspCI CTTAAG 2 cut(s) 700, 2086
MspI CCGG 9 cut(s) 44, 110, 137, 257, 277, 282, 424, 481, 516
MunI CAATTG 2 cut(s) 1251, 1481
Mva1269I GAATGC 3 cut(s) 1685, 1860, 3361
MvnI CGCG 3 cut(s) 120, 186, 192
MwoI GCNNNNNNNGC 9 cut(s) 59, 192, 272, 300, 429, 1775, 1784, 2702, 3466
NciI CCSGG 6 cut(s) 110, 137, 257, 258, 277, 278
NcoI CCATGG 2 cut(s) 1958, 3036
NdeI CATATG 1 cut(s) 2131
NdeII GATC 8 cut(s) 895, 1609, 1729, 2112, 2499, 2509, 3086, 3329
NheI GCTAGC 1 cut(s) 2021
NmuCI GTSAC 3 cut(s) 1237, 1918, 2074
NruI TCGCGA 1 cut(s) 120
NsiI ATGCAT 3 cut(s) 715, 1159, 1860
NspI RCATGY 3 cut(s) 419, 1596, 3049
PaeI GCATGC 1 cut(s) 419
PasI CCCWGGG 1 cut(s) 88
PceI AGGCCT 1 cut(s) 3128
PciI ACATGT 1 cut(s) 1592
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PctI GAATGC 3 cut(s) 1685, 1860, 3361
PdmI GAANNNNTTC 1 cut(s) 3245
PfeI GAWTC 9 cut(s) 5, 127, 161, 532, 1025, 1207, 2225, 2298, 3496
PflMI CCANNNNNTGG 4 cut(s) 934, 2645, 2714, 2753
PfoI TCCNGGA 1 cut(s) 2536
PleI GAGTC 1 cut(s) 1663
PmaCI CACGTG 1 cut(s) 2339
PmlI CACGTG 1 cut(s) 2339
PpsI GAGTC 1 cut(s) 1663
Ppu21I YACGTR 1 cut(s) 2339
PpuMI RGGWCCY 2 cut(s) 733, 2447
PscI ACATGT 1 cut(s) 1592
PsiI TTATAA 3 cut(s) 2199, 3102, 3197
Psp124BI GAGCTC 2 cut(s) 1152, 3482
Psp5II RGGWCCY 2 cut(s) 733, 2447
PspCI CACGTG 1 cut(s) 2339
PspFI CCCAGC 3 cut(s) 9, 445, 1778
PspPPI RGGWCCY 2 cut(s) 733, 2447
PsrI GAACNNNNNNTAC 2 cut(s) 2766, 2798
PstI CTGCAG 1 cut(s) 1249
PstNI CAGNNNCTG 1 cut(s) 1676
PsuI RGATCY 4 cut(s) 895, 1609, 2499, 3086
PvuII CAGCTG 1 cut(s) 814
RruI TCGCGA 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 3504
SacI GAGCTC 2 cut(s) 1152, 3482
SacII CCGCGG 1 cut(s) 193
SalI GTCGAC 1 cut(s) 1319
SaqAI TTAA 9 cut(s) 701, 708, 789, 1415, 2087, 2304, 2913, 3075, 3511
Sau3AI GATC 8 cut(s) 895, 1609, 1729, 2112, 2499, 2509, 3086, 3329
SchI GAGTC 1 cut(s) 1664
SexAI ACCWGGT 2 cut(s) 537, 1135
SfaNI GCATC 7 cut(s) 223, 611, 871, 943, 1166, 1867, 2293
SfcI CTRYAG 2 cut(s) 685, 1245
Sfr303I CCGCGG 1 cut(s) 193
SgrBI CCGCGG 1 cut(s) 193
SmaI CCCGGG 2 cut(s) 258, 278
SmiMI CAYNNNNRTG 1 cut(s) 3504
SmlI CTYRAG 5 cut(s) 602, 700, 899, 2086, 3210
SmoI CTYRAG 5 cut(s) 602, 700, 899, 2086, 3210
SphI GCATGC 1 cut(s) 419
SrfI GCCCGGGC 1 cut(s) 278
SseBI AGGCCT 1 cut(s) 3128
SspMI CTAG 6 cut(s) 332, 1305, 1328, 1700, 2022, 2106
SstI GAGCTC 2 cut(s) 1152, 3482
StuI AGGCCT 1 cut(s) 3128
StyI CCWWGG 3 cut(s) 270, 1958, 3036
TaaI ACNGT 2 cut(s) 617, 1237
TaiI ACGT 4 cut(s) 471, 2341, 2830, 3108
TatI WGTACW 2 cut(s) 1527, 3396
TauI GCSGC 4 cut(s) 195, 303, 627, 3463
TfiI GAWTC 9 cut(s) 5, 127, 161, 532, 1025, 1207, 2225, 2298, 3496
Tru1I TTAA 9 cut(s) 701, 708, 789, 1415, 2087, 2304, 2913, 3075, 3511
Tru9I TTAA 9 cut(s) 701, 708, 789, 1415, 2087, 2304, 2913, 3075, 3511
TscAI CASTG 8 cut(s) 268, 373, 415, 749, 785, 1119, 1739, 2839
TseFI GTSAC 3 cut(s) 1237, 1918, 2074
TseI GCWGC 9 cut(s) 40, 251, 811, 1247, 1769, 2054, 2188, 2389, 3457
Tsp45I GTSAC 3 cut(s) 1237, 1918, 2074
TspGWI ACGGA 2 cut(s) 1094, 1625
TspMI CCCGGG 2 cut(s) 256, 276
TspRI CASTG 8 cut(s) 268, 373, 415, 749, 785, 1119, 1739, 2839
Van91I CCANNNNNTGG 4 cut(s) 934, 2645, 2714, 2753
Vha464I CTTAAG 2 cut(s) 700, 2086
VneI GTGCAC 1 cut(s) 1131
XagI CCTNNNNNAGG 1 cut(s) 1224
XapI RAATTY 5 cut(s) 77, 1624, 1874, 3205, 3388
XceI RCATGY 3 cut(s) 419, 1596, 3049
XmaI CCCGGG 2 cut(s) 256, 276
XmiI GTMKAC 2 cut(s) 1320, 1658
XmnI GAANNNNTTC 1 cut(s) 3245
XspI CTAG 6 cut(s) 332, 1305, 1328, 1700, 2022, 2106
Zsp2I ATGCAT 3 cut(s) 715, 1159, 1860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.