Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012136

Physical Location & Seq

Genomic Coordinates Reverse (-)

5034072 .. 5035603

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCCATTTCCATGGCCTTGCTTTCTCCCACAACCCATCTCCCAACCCTCTCACCTTCCTCATCACACTTCAAACCCCTCCTGACCCACAAGCCTTTTCTCTCTCTCAGACCCAAGAACCACCCTCTCTTCACCACCAGAGCCTCGGCTGAGAATGGAGCTGGAGCTCTCGGCTCAGTTGCCACAGCCGTGGAGCCCAAAGCAGAGCCCGAGGTCCCCGTGCCCGCCGCTGAGGCTGTTCCGGTGAAGAGTGAGACCTCTGCCGGGGCTAATGGATCACCTGGAACAGCTGAGGAGGTAATCGTGGTGAATTTATTTGAAGATGGGAGATGGGTCAATGGGACTTGGGATTTGAAGCAGTTTGAGAAAAATGGAAAAACCGATTGGGATGCTGTTATTGATGCTGAGGCCAGGAGGAGAAAATGGCTCCAGGACAACCCGGAATCATCCAGTAATGAGAACCCTGTGTCTTTTGACACGTCCATTGTACCTTGGTGGGCATGGATAAAGAGATACCATTTACCTGAAGCTGAACTACTTAACGGTCGTGCTGCTATGATAGGTTTTTTCATGGCGTATTTTGTTGATAGCTTGACTGGAGTAGGCCTAGTCGACCAAATGGGCAATTTCTTCTGCAAAACGTTATTGTTCATAGCTGTAGGGGGAGTGCTTCTGATCATCAAGAACGAGGATGTTGAAAACCTAAAGAAACTACTCGAAGAGACGACGTTTTATGATAAGCAATGGCAAGCAACCTGGCAAGAAGAGACACCGGCTAGCAGTAGCAAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006810 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009889 GO:0009891 GO:0009893 GO:0010380 GO:0010468 GO:0010556 GO:0016020 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019899 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046136 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051193 GO:0051194 GO:0051234 GO:0051252 GO:0055035 GO:0055085 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0080090 GO:0090056 GO:0140110 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1902326 GO:1902930 GO:1902932 GO:1903506 GO:1904963 GO:1904964 GO:1904965 GO:1904966 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

266

Amino Acids

29.23

Weight (kDa)

5.48

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17600 AT5G47110
fragaria_vesca	FvH4_5g20330 FvH4_5g20330
malus_domestica	MD04G1055800.v1.1 MD06G1047300.v1.1
prunus_persica	Prupe.5G057100_v2.0.a1
pyrus_communis	pycom04g04920 pycom06g04010
rosa_chinensis	RchiOBHm_Chr7g0205511
rosa_laevigata	RLG00000003373
rosa_multiflora	Rmu_sc0002237.1_g000015
rosa_roxburghii	Rroxscaffold_3G00252170
rosa_rugosa	Rorug07G0091800
rosa_samantha	Rh7AG222400 Rh7BG217800 Rh7CG234800 Rh7DG228800
rosa_wichuraiana	Rw7G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	2 cut(s)	225, 228
AclI	AACGTT	1 cut(s)	641
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	264
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	4 cut(s)	73, 320, 355, 698
AjiI	CACGTC	1 cut(s)	480
AjnI	CCWGG	4 cut(s)	280, 410, 429, 755
AjuI	GAANNNNNNNTTGG	2 cut(s)	367, 399
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	6 cut(s)	161, 167, 290, 530, 591, 656
AluI	AGCT	6 cut(s)	161, 167, 290, 530, 591, 656
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	3 cut(s)	248, 716, 761
AlwI	GGATC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	3 cut(s)	15, 408, 604
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	310
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	2 cut(s)	265, 440
AsuHPI	GGTGA	5 cut(s)	45, 124, 256, 270, 319
AsuNHI	GCTAGC	1 cut(s)	776
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	225
BanII	GRGCYC	3 cut(s)	169, 198, 210
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
Bbv12I	GWGCWC	1 cut(s)	169
BbvCI	CCTCAGC	3 cut(s)	231, 291, 405
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	3 cut(s)	45, 317, 324
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	4 cut(s)	282, 412, 431, 757
BclI	TGATCA	1 cut(s)	675
BcnI	CCSGG	2 cut(s)	265, 440
BcoDI	GTCTC	3 cut(s)	248, 716, 761
BfaI	CTAG	2 cut(s)	608, 777
BfmI	CTRYAG	1 cut(s)	657
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	228, 552
BlsI	GCNGC	2 cut(s)	229, 553
Bme1390I	CCNGG	6 cut(s)	265, 282, 412, 431, 440, 757
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	3 cut(s)	195, 216, 428
BmrFI	CCNGG	6 cut(s)	265, 282, 412, 431, 440, 757
BmsI	GCATC	2 cut(s)	379, 391
BmtI	GCTAGC	1 cut(s)	780
BpmI	CTGGAG	3 cut(s)	183, 413, 618
Bpu10I	CCTNAGC	3 cut(s)	231, 291, 405
BpuMI	CCSGG	2 cut(s)	265, 440
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	6 cut(s)	12, 144, 189, 210, 264, 491
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse118I	RCCGGY	1 cut(s)	772
Bse1I	ACTGG	2 cut(s)	450, 601
Bse3DI	GCAATG	1 cut(s)	749
BseBI	CCWGG	4 cut(s)	282, 412, 431, 757
BseDI	CCNNGG	6 cut(s)	12, 144, 189, 210, 264, 491
BseGI	GGATG	3 cut(s)	394, 446, 697
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	6 cut(s)	121, 141, 189, 222, 282, 396
BseNI	ACTGG	2 cut(s)	450, 601
BseRI	GAGGAG	2 cut(s)	308, 430
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	538
Bsh1285I	CGRYCG	1 cut(s)	547
BshFI	GGCC	3 cut(s)	17, 410, 606
BsiEI	CGRYCG	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	4 cut(s)	242, 264, 440, 773
BslFI	GGGAC	2 cut(s)	200, 355
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	3 cut(s)	248, 716, 761
BsmBI	CGTCTC	1 cut(s)	716
BsmFI	GGGAC	2 cut(s)	200, 355
BsnI	GGCC	3 cut(s)	17, 410, 606
Bso31I	GGTCTC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	4 cut(s)	169, 198, 210, 225
Bsp143I	GATC	2 cut(s)	275, 675
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	225, 228
BspANI	GGCC	3 cut(s)	17, 410, 606
BspCNI	CTCAG	6 cut(s)	120, 142, 188, 223, 283, 397
BspLI	GGNNCC	3 cut(s)	195, 216, 428
BspOI	GCTAGC	1 cut(s)	780
BspPI	GGATC	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	772
BsrI	ACTGG	2 cut(s)	450, 601
BssAI	RCCGGY	1 cut(s)	772
BssECI	CCNNGG	6 cut(s)	12, 144, 189, 210, 264, 491
BssMI	GATC	2 cut(s)	275, 675
BssT1I	CCWWGG	2 cut(s)	12, 491
Bst2UI	CCWGG	4 cut(s)	282, 412, 431, 757
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	4 cut(s)	134, 242, 714, 759
BstC8I	GCNNGC	3 cut(s)	225, 750, 778
BstDEI	CTNAG	6 cut(s)	107, 150, 175, 231, 291, 405
BstDSI	CCRYGG	2 cut(s)	12, 189
BstF5I	GGATG	3 cut(s)	394, 446, 697
BstKTI	GATC	2 cut(s)	278, 678
BstMAI	GTCTC	3 cut(s)	248, 716, 761
BstMBI	GATC	2 cut(s)	275, 675
BstMCI	CGRYCG	1 cut(s)	547
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	4 cut(s)	282, 412, 431, 757
BstSCI	CCNGG	6 cut(s)	263, 280, 410, 429, 438, 755
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	538
BstXI	CCANNNNNNTGG	2 cut(s)	13, 190
BsuRI	GGCC	3 cut(s)	17, 410, 606
BtgI	CCRYGG	2 cut(s)	12, 189
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	394, 446, 697
Cac8I	GCNNGC	3 cut(s)	225, 750, 778
Cfr10I	RCCGGY	1 cut(s)	772
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	3 cut(s)	13, 501, 571
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	6 cut(s)	107, 150, 175, 231, 291, 405
DpnI	GATC	2 cut(s)	277, 677
DpnII	GATC	2 cut(s)	275, 675
Eam1104I	CTCTTC	4 cut(s)	134, 242, 714, 759
EarI	CTCTTC	4 cut(s)	134, 242, 714, 759
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	12, 491
Eco147I	AGGCCT	1 cut(s)	606
Eco24I	GRGCYC	3 cut(s)	169, 198, 210
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	4 cut(s)	280, 410, 429, 755
EcoT14I	CCWWGG	2 cut(s)	12, 491
EcoT38I	GRGCYC	3 cut(s)	169, 198, 210
ErhI	CCWWGG	2 cut(s)	12, 491
Esp3I	CGTCTC	1 cut(s)	716
FaeI	CATG	3 cut(s)	16, 504, 574
FaiI	YATR	6 cut(s)	14, 502, 557, 572, 653, 735
FaqI	GGGAC	2 cut(s)	200, 355
FatI	CATG	3 cut(s)	12, 500, 570
FauI	CCCGC	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	675
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	2 cut(s)	228, 552
FokI	GGATG	3 cut(s)	401, 433, 704
FriOI	GRGCYC	3 cut(s)	169, 198, 210
Fsp4HI	GCNGC	2 cut(s)	228, 552
FspBI	CTAG	2 cut(s)	608, 777
GluI	GCNGC	2 cut(s)	228, 552
GsuI	CTGGAG	3 cut(s)	183, 413, 618
HaeIII	GGCC	3 cut(s)	17, 410, 606
HapII	CCGG	4 cut(s)	242, 264, 440, 773
Hin1II	CATG	3 cut(s)	16, 504, 574
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	4 cut(s)	242, 264, 440, 773
HphI	GGTGA	5 cut(s)	45, 124, 256, 270, 319
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	2 cut(s)	110, 675
Hpy188III	TCNNGA	2 cut(s)	82, 682
Hpy8I	GTNNAC	1 cut(s)	613
Hpy99I	CGWCG	1 cut(s)	730
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	3 cut(s)	479, 641, 728
HpyCH4V	TGCA	1 cut(s)	636
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	6 cut(s)	107, 150, 175, 231, 291, 405
HpySE526I	ACGT	3 cut(s)	479, 641, 728
Hsp92II	CATG	3 cut(s)	16, 504, 574
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	2 cut(s)	275, 675
LmnI	GCTCC	4 cut(s)	158, 164, 193, 432
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	2 cut(s)	379, 391
MaeI	CTAG	2 cut(s)	608, 777
MaeII	ACGT	3 cut(s)	479, 641, 728
MalI	GATC	2 cut(s)	277, 677
MboI	GATC	2 cut(s)	275, 675
MboII	GAAGA	6 cut(s)	121, 259, 332, 622, 731, 776
MhlI	GDGCHC	4 cut(s)	169, 198, 210, 225
MluCI	AATT	2 cut(s)	310, 625
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	11, 188
MspA1I	CMGCKG	2 cut(s)	230, 290
MspI	CCGG	4 cut(s)	242, 264, 440, 773
MspR9I	CCNGG	6 cut(s)	265, 282, 412, 431, 440, 757
MvaI	CCWGG	4 cut(s)	282, 412, 431, 757
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	2 cut(s)	265, 440
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	275, 675
NheI	GCTAGC	1 cut(s)	776
NlaIII	CATG	3 cut(s)	16, 504, 574
NlaIV	GGNNCC	3 cut(s)	195, 216, 428
NmeAIII	GCCGAG	2 cut(s)	125, 150
OliI	CACNNNNGTG	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	443
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	2 cut(s)	229, 553
PpuMI	RGGWCCY	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	169
Psp1406I	AACGTT	1 cut(s)	641
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	4 cut(s)	280, 410, 429, 755
PspGI	CCWGG	4 cut(s)	280, 410, 429, 755
PspN4I	GGNNCC	3 cut(s)	195, 216, 428
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
RseI	CAYNNNNRTG	2 cut(s)	11, 188
SacI	GAGCTC	1 cut(s)	169
SalI	GTCGAC	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	2 cut(s)	228, 552
Sau3AI	GATC	2 cut(s)	275, 675
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	6 cut(s)	265, 282, 412, 431, 440, 757
SduI	GDGCHC	4 cut(s)	169, 198, 210, 225
SfaNI	GCATC	2 cut(s)	379, 391
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	2 cut(s)	11, 188
Sse9I	AATT	2 cut(s)	310, 625
SseBI	AGGCCT	1 cut(s)	606
SsiI	CCGC	2 cut(s)	225, 228
SspMI	CTAG	2 cut(s)	608, 777
SstI	GAGCTC	1 cut(s)	169
StuI	AGGCCT	1 cut(s)	606
StyD4I	CCNGG	6 cut(s)	263, 280, 410, 429, 438, 755
StyI	CCWWGG	2 cut(s)	12, 491
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	3 cut(s)	482, 644, 731
TaqI	TCGA	2 cut(s)	612, 717
TasI	AATT	2 cut(s)	310, 625
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TseI	GCWGC	1 cut(s)	551
TspDTI	ATGAA	2 cut(s)	559, 640
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	612
XspI	CTAG	2 cut(s)	608, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.