Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010128

Physical Location & Seq

Genomic Coordinates Forward (+)

8496378 .. 8497223

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGACTGGATGGAGCAGGAACAAGAAAGAGGCATTACCATAACATCTGCTGCAACTACGACATTTTGGGACAACCATAGGATTAACATCATTGACACTCCTGGCCACGTTGACTTTACCCTTGAAGTGGAGCGGGCACTCAGGGTGCTGGATGGCGCTATATGCTTGTTTGACAGTGTTGCTGGTGTGGAACCTCAATCTGAAACTGTGTGGAGGCAAGCTGATAGATATGGGGTGCCCAGGATTTGCTTTGTCAATAAAATGGATCGTCTTGGAGCAAACTTTTTCCGAACAAGGGACATGATGGTGACAAATTTGGGTGCCAAACCACTTGTACTTCAAATTCTAGTTGGTGCAGAAGATAATTTTAAGGGAGTTATTGATCTTGTGAAGATGAGAGCTATACTTTGGTCTGGAGAAGAGTTGGGTGCTAAGTTTGTTTACGAGGAGATTCCATCTGATCTGCTGGAGCTCGCTCAAGAATACAGGGTGGAGATGATAGAAACCATAGTTGAGTTGGATGATGAAGCTATGGAGGGCTATCTAGAAGGAGTTGAACCTGATGAGGAAACCATTAAGAAATTAATTAGGAAGGGAACCATTGCAATTAATTTCGTGCCAGTACTGTGTGGTTCAGCTTTTAAAAATAAGGGGGTTCAACCATTGCTTGATGCAGTCGTGGATTATTTGCCTTCACCACTTGATGTGCCACCAATGAAGGGCACTGATGCAGACAACCAAGAAATCACAATTGAAAGGGCCTCAAGTGATGACAAACCATTTGCCGGGCTAGCATTCAAGATCGATCGATCAGTGATCCATTTGTTGGGTCCCTTCCGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009845 GO:0009941 GO:0009987 GO:0016043 GO:0017076 GO:0030554 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0071840 GO:0090351 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

282

Amino Acids

31.55

Weight (kDa)

4.57

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	1 - 232	6.6e-50	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62750
fragaria_vesca	FvH4_5g00390 FvH4_5g00390 FvH4_5g00390 FvH4_5g00390
malus_domestica	MD04G1081800.v1.1 MD06G1065300.v1.1
prunus_persica	Prupe.5G076600_v2.0.a1 Prupe.5G076600_v2.0.a1
pyrus_communis	pycom04g07370 pycom06g05630
rosa_chinensis	RchiOBHm_Chr7g0202121
rosa_laevigata	RLG00000003624
rosa_multiflora	Rmu_ssc0000228.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254840
rosa_rugosa	Rorug07G0068100
rosa_samantha	Rh7AG195600 Rh7BG196900 Rh7CG206700 Rh7DG202200
rosa_wichuraiana	Rw7G017130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	235, 320
AccB7I	CCANNNNNTGG	1 cut(s)	826
AccBSI	CCGCTC	1 cut(s)	133
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	2 cut(s)	273, 811
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	313, 342
AfaI	GTAC	2 cut(s)	336, 624
AfiI	CCNNNNNNNGG	5 cut(s)	127, 295, 719, 785, 826
AgsI	TTSAA	6 cut(s)	125, 341, 557, 659, 755, 799
AjnI	CCWGG	2 cut(s)	100, 239
AluBI	AGCT	5 cut(s)	221, 401, 472, 530, 638
AluI	AGCT	5 cut(s)	221, 401, 472, 530, 638
Alw21I	GWGCWC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	273, 811
AoxI	GGCC	2 cut(s)	103, 759
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	313, 342
ArsI	GACNNNNNNTTYG	2 cut(s)	764, 796
AseI	ATTAAT	2 cut(s)	584, 609
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	759, 830
AsuC2I	CCSGG	1 cut(s)	787
AsuHPI	GGTGA	2 cut(s)	319, 687
AsuNHI	GCTAGC	1 cut(s)	790
AvaII	GGWCC	1 cut(s)	830
BaeGI	GKGCMC	3 cut(s)	139, 240, 725
BalI	TGGCCA	1 cut(s)	105
BanI	GGYRCC	2 cut(s)	235, 320
BanII	GRGCYC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	4 cut(s)	4, 146, 298, 463
BciT130I	CCWGG	2 cut(s)	102, 241
BcnI	CCSGG	1 cut(s)	787
BfaI	CTAG	3 cut(s)	347, 545, 791
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	3 cut(s)	102, 241, 787
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	2 cut(s)	759, 830
BmiI	GGNNCC	6 cut(s)	192, 237, 322, 598, 831, 832
BmrFI	CCNGG	3 cut(s)	102, 241, 787
BmsI	GCATC	2 cut(s)	661, 718
BmtI	GCTAGC	1 cut(s)	794
BpmI	CTGGAG	2 cut(s)	435, 488
BpuEI	CTTGAG	2 cut(s)	462, 748
BpuMI	CCSGG	1 cut(s)	787
Bsa29I	ATCGAT	2 cut(s)	804, 808
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 295, 719, 785, 826
Bse1I	ACTGG	2 cut(s)	11, 620
Bse3DI	GCAATG	2 cut(s)	600, 662
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	102, 241
BseCI	ATCGAT	2 cut(s)	804, 808
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	3 cut(s)	15, 157, 526
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	5 cut(s)	127, 295, 719, 785, 826
BseMI	GCAATG	2 cut(s)	600, 662
BseMII	CTCAG	1 cut(s)	154
BseNI	ACTGG	2 cut(s)	11, 620
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	3 cut(s)	139, 240, 725
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	808
BshFI	GGCC	2 cut(s)	105, 761
BshNI	GGYRCC	2 cut(s)	235, 320
BshVI	ATCGAT	2 cut(s)	804, 808
BsiEI	CGRYCG	1 cut(s)	808
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	786
BslFI	GGGAC	3 cut(s)	83, 311, 816
BslI	CCNNNNNNNGG	5 cut(s)	127, 295, 719, 785, 826
BsmFI	GGGAC	3 cut(s)	83, 311, 816
BsmI	GAATGC	1 cut(s)	794
BsnI	GGCC	2 cut(s)	105, 761
Bsp1286I	GDGCHC	4 cut(s)	139, 240, 474, 725
Bsp143I	GATC	7 cut(s)	265, 382, 460, 801, 805, 809, 816
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	2 cut(s)	105, 761
BspCNI	CTCAG	1 cut(s)	153
BspDI	ATCGAT	2 cut(s)	804, 808
BspLI	GGNNCC	6 cut(s)	192, 237, 322, 598, 831, 832
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	2 cut(s)	273, 811
BspT107I	GGYRCC	2 cut(s)	235, 320
BsrBI	CCGCTC	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	600, 662
BsrI	ACTGG	2 cut(s)	11, 620
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	7 cut(s)	265, 382, 460, 801, 805, 809, 816
Bst2UI	CCWGG	2 cut(s)	102, 241
Bst4CI	ACNGT	3 cut(s)	176, 208, 627
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	4 cut(s)	135, 219, 474, 792
BstDEI	CTNAG	2 cut(s)	140, 432
BstF5I	GGATG	3 cut(s)	15, 157, 526
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	7 cut(s)	268, 385, 463, 804, 808, 812, 819
BstMBI	GATC	7 cut(s)	265, 382, 460, 801, 805, 809, 816
BstMCI	CGRYCG	1 cut(s)	808
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 791
BstNI	CCWGG	2 cut(s)	102, 241
BstSCI	CCNGG	3 cut(s)	100, 239, 785
BstSLI	GKGCMC	3 cut(s)	139, 240, 725
BstV1I	GCAGC	1 cut(s)	37
Bsu15I	ATCGAT	2 cut(s)	804, 808
BsuRI	GGCC	2 cut(s)	105, 761
BsuTUI	ATCGAT	2 cut(s)	804, 808
BtsCI	GGATG	3 cut(s)	15, 157, 526
BtsIMutI	CAGTG	3 cut(s)	181, 723, 819
Cac8I	GCNNGC	4 cut(s)	135, 219, 474, 792
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	759, 830
ClaI	ATCGAT	2 cut(s)	804, 808
Csp6I	GTAC	2 cut(s)	335, 623
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	9 cut(s)	105, 221, 401, 472, 530, 540, 638, 761, 790
CviKI_1	RGCY	9 cut(s)	105, 221, 401, 472, 530, 540, 638, 761, 790
CviQI	GTAC	2 cut(s)	335, 623
DdeI	CTNAG	2 cut(s)	140, 432
DpnI	GATC	7 cut(s)	267, 384, 462, 803, 807, 811, 818
DpnII	GATC	7 cut(s)	265, 382, 460, 801, 805, 809, 816
DraI	TTTAAA	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	472
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	830
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoO109I	RGGNCCY	2 cut(s)	759, 830
EcoRII	CCWGG	2 cut(s)	100, 239
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	1 cut(s)	304
FaiI	YATR	9 cut(s)	41, 78, 161, 163, 231, 302, 404, 509, 533
FaqI	GGGAC	3 cut(s)	83, 311, 816
FatI	CATG	1 cut(s)	300
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	3 cut(s)	22, 164, 533
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	3 cut(s)	347, 545, 791
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	435, 488
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	105, 761
HapII	CCGG	1 cut(s)	786
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	1 cut(s)	786
HphI	GGTGA	2 cut(s)	319, 687
Hpy166II	GTNNAC	2 cut(s)	112, 442
Hpy188I	TCNGA	3 cut(s)	202, 290, 460
Hpy188III	TCNNGA	4 cut(s)	414, 479, 545, 799
Hpy8I	GTNNAC	2 cut(s)	112, 442
HpyAV	CCTTC	5 cut(s)	542, 586, 702, 712, 844
HpyCH4III	ACNGT	3 cut(s)	176, 208, 627
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	5 cut(s)	53, 356, 605, 674, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 791
HpyF3I	CTNAG	2 cut(s)	140, 432
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	156
KflI	GGGWCCC	1 cut(s)	830
Kzo9I	GATC	7 cut(s)	265, 382, 460, 801, 805, 809, 816
LmnI	GCTCC	4 cut(s)	13, 130, 275, 469
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	661, 718
MaeI	CTAG	3 cut(s)	347, 545, 791
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	7 cut(s)	267, 384, 462, 803, 807, 811, 818
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	7 cut(s)	265, 382, 460, 801, 805, 809, 816
MboII	GAAGA	3 cut(s)	371, 403, 431
MfeI	CAATTG	1 cut(s)	750
MhlI	GDGCHC	4 cut(s)	139, 240, 474, 725
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	8 cut(s)	313, 342, 364, 581, 585, 606, 610, 750
MluNI	TGGCCA	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	7 cut(s)	23, 204, 207, 439, 529, 559, 772
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	6 cut(s)	84, 369, 576, 584, 609, 642
MslI	CAYNNNNRTG	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	1 cut(s)	786
MspR9I	CCNGG	3 cut(s)	102, 241, 787
MunI	CAATTG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	794
MvaI	CCWGG	2 cut(s)	102, 241
MwoI	GCNNNNNNNGC	2 cut(s)	162, 791
NciI	CCSGG	1 cut(s)	787
NdeII	GATC	7 cut(s)	265, 382, 460, 801, 805, 809, 816
NheI	GCTAGC	1 cut(s)	790
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	6 cut(s)	192, 237, 322, 598, 831, 832
NmuCI	GTSAC	1 cut(s)	307
PctI	GAATGC	1 cut(s)	794
PfeI	GAWTC	1 cut(s)	451
PflMI	CCANNNNNTGG	1 cut(s)	826
PkrI	GCNGC	1 cut(s)	52
Ple19I	CGATCG	1 cut(s)	808
PpuMI	RGGWCCY	1 cut(s)	830
PshBI	ATTAAT	2 cut(s)	584, 609
Psp124BI	GAGCTC	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	830
Psp6I	CCWGG	2 cut(s)	100, 239
PspGI	CCWGG	2 cut(s)	100, 239
PspN4I	GGNNCC	6 cut(s)	192, 237, 322, 598, 831, 832
PspPI	GGNCC	2 cut(s)	759, 830
PspPPI	RGGWCCY	1 cut(s)	830
PvuI	CGATCG	1 cut(s)	808
RsaI	GTAC	2 cut(s)	336, 624
RsaNI	GTAC	2 cut(s)	335, 623
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	6 cut(s)	84, 369, 576, 584, 609, 642
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	7 cut(s)	265, 382, 460, 801, 805, 809, 816
Sau96I	GGNCC	2 cut(s)	759, 830
ScaI	AGTACT	1 cut(s)	624
ScrFI	CCNGG	3 cut(s)	102, 241, 787
SduI	GDGCHC	4 cut(s)	139, 240, 474, 725
SetI	ASST	8 cut(s)	111, 196, 223, 403, 474, 532, 562, 640
SfaNI	GCATC	2 cut(s)	661, 718
SinI	GGWCC	1 cut(s)	830
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	477, 763
SmoI	CTYRAG	2 cut(s)	477, 763
Sse9I	AATT	8 cut(s)	313, 342, 364, 581, 585, 606, 610, 750
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	3 cut(s)	347, 545, 791
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	3 cut(s)	100, 239, 785
TaaI	ACNGT	3 cut(s)	176, 208, 627
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	2 cut(s)	804, 808
TasI	AATT	8 cut(s)	313, 342, 364, 581, 585, 606, 610, 750
TatI	WGTACW	2 cut(s)	334, 622
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	6 cut(s)	84, 369, 576, 584, 609, 642
Tru9I	TTAA	6 cut(s)	84, 369, 576, 584, 609, 642
TscAI	CASTG	3 cut(s)	181, 730, 819
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	540, 731
TspGWI	ACGGA	1 cut(s)	827
TspRI	CASTG	3 cut(s)	181, 730, 819
Van91I	CCANNNNNTGG	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	830
VspI	ATTAAT	2 cut(s)	584, 609
XapI	RAATTY	2 cut(s)	313, 342
XbaI	TCTAGA	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	3 cut(s)	347, 545, 791
ZrmI	AGTACT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.