pycom06g06790

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0016840
Physical Location & Seq
Forward (+)
10904058 .. 10905909
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 783 bp
ATGGATTATATTCCTTCCAATATACTCCAATTTGACCAAGCTTCACAACATGCTGATGACTTGTTCCAAGTTTCCACCTTTTCCTACATAGAGAGCACAATCCAAGACAATCAAGCACTCCCGCCGACTCTATCTCAGGATGGTCGTGATCTCACTTGGAGGCCAAGCTCCGGCCGCGGAAAGCGGAAGGCATCATCGTCGTCCATCAGTTTTAGTGAAATTGATGATAAAAAACCAAAGGGCAACAAGAAAGTCATGCATAGAGATATTGAACGACAAAGAAGACAACAAATGGGCACCCTTTATGCATCTCTTCGATCTCAACTCCCCCTTGAATATCTCAAGGGTAAGAGGTCTATATCTGATCATGTGCACCAGGCAGGAAATTATATTAAGCATCTACAAAACAATGTCCAAGAACTGCATAATAAGAGGGATCAATTGAAAAGGTCGTGCAATATTTTATGCTCTGCCGGTACCAAAAATACACAGTGCAAAATGCAACATTCTGTAATAATTGTTAGACCTTGTAGAGTAGGAATGGAAGTTGTTGTGAATACTCCCTTGAAACAAGGGCTTCCCCTTTCTAGAGTTCTCGAAATTCTGGTCGGAGAAGGACTTAGCACGGTCAGCTGCATCTCAACCGAAGTAAATGAAAGGTCGATTTATACAACTGAATCTGAGGTAAGTGATGGGAGTATCATTGATATGTCTGAACTACAACAGAGATTGACAAGATCTTTTGATCAAGCCTGGCTTCAACTAAGGTGCTGGAGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

261

Amino Acids

29.62

Weight (kDa)

9.14

Isoelectric Point (pI)

69.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 83 - 135 2.3e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016840)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g01160
prunus_persica Prupe.5G086600_v2.0.a1
pyrus_communis pycom06g06790
rosa_chinensis RchiOBHm_Chr7g0199961
rosa_laevigata RLG00000003756
rosa_roxburghii Rroxscaffold_3G00256320 Rroxscaffold_7G00207590
rosa_rugosa Rorug07G0057400 Rorug07G0057500
rosa_samantha Rh7AG182700 Rh7BG185900 Rh7CG192500 Rh7DG185700
rosa_wichuraiana Rw7G016020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 476
AccB1I GGYRCC 2 cut(s) 296, 476
AccII CGCG 1 cut(s) 177
AciI CCGC 4 cut(s) 122, 175, 177, 184
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 600
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 5 cut(s) 272, 335, 445, 568, 761
AjnI CCWGG 2 cut(s) 375, 752
AluBI AGCT 3 cut(s) 41, 168, 633
AluI AGCT 3 cut(s) 41, 168, 633
Alw21I GWGCWC 2 cut(s) 98, 375
Alw44I GTGCAC 1 cut(s) 371
AlwI GGATC 1 cut(s) 444
AoxI GGCC 2 cut(s) 161, 172
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 633
ApoI RAATTY 1 cut(s) 600
ArsI GACNNNNNNTTYG 2 cut(s) 591, 623
Asp718I GGTACC 1 cut(s) 476
BaeGI GKGCMC 2 cut(s) 299, 375
BanI GGYRCC 2 cut(s) 296, 476
BbsI GAAGAC 1 cut(s) 289
Bbv12I GWGCWC 2 cut(s) 98, 375
BbvI GCAGC 1 cut(s) 620
BccI CCATC 3 cut(s) 134, 212, 686
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BciT130I CCWGG 2 cut(s) 377, 754
BclI TGATCA 2 cut(s) 364, 745
BfaI CTAG 1 cut(s) 588
BglII AGATCT 1 cut(s) 737
BisI GCNGC 2 cut(s) 175, 634
BlsI GCNGC 2 cut(s) 176, 635
Bme1390I CCNGG 2 cut(s) 377, 754
BmiI GGNNCC 2 cut(s) 298, 478
BmrFI CCNGG 2 cut(s) 377, 754
BmsI GCATC 4 cut(s) 200, 317, 406, 645
BpiI GAAGAC 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 473
BseBI CCWGG 2 cut(s) 377, 754
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 149, 672
BseSI GKGCMC 2 cut(s) 299, 375
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 620
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 2 cut(s) 163, 174
BshNI GGYRCC 2 cut(s) 296, 476
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 98, 375
BsiSI CCGG 2 cut(s) 171, 474
BslI CCNNNNNNNGG 1 cut(s) 170
BsnI GGCC 2 cut(s) 163, 174
Bsp1286I GDGCHC 3 cut(s) 98, 299, 375
Bsp143I GATC 6 cut(s) 148, 317, 364, 436, 737, 745
BspACI CCGC 4 cut(s) 122, 175, 177, 184
BspANI GGCC 2 cut(s) 163, 174
BspCNI CTCAG 2 cut(s) 148, 673
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 298, 478
BspPI GGATC 1 cut(s) 444
BspT107I GGYRCC 2 cut(s) 296, 476
BsrFI RCCGGY 1 cut(s) 473
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 6 cut(s) 148, 317, 364, 436, 737, 745
Bst2UI CCWGG 2 cut(s) 377, 754
Bst4CI ACNGT 2 cut(s) 492, 628
Bst6I CTCTTC 1 cut(s) 318
BstDEI CTNAG 4 cut(s) 135, 620, 681, 764
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 177
BstKTI GATC 6 cut(s) 151, 320, 367, 439, 740, 748
BstMBI GATC 6 cut(s) 148, 317, 364, 436, 737, 745
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 174, 630
BstNI CCWGG 2 cut(s) 377, 754
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 2 cut(s) 375, 752
BstSLI GKGCMC 2 cut(s) 299, 375
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 620
BstV2I GAAGAC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 737
BstYI RGATCY 1 cut(s) 737
BstZI CGGCCG 1 cut(s) 172
BsuRI GGCC 2 cut(s) 163, 174
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 473
Cfr42I CCGCGG 1 cut(s) 178
Csp6I GTAC 1 cut(s) 477
CviAII CATG 3 cut(s) 50, 256, 368
CviJI RGCY 8 cut(s) 41, 163, 168, 174, 577, 633, 752, 757
CviKI_1 RGCY 8 cut(s) 41, 163, 168, 174, 577, 633, 752, 757
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 4 cut(s) 135, 620, 681, 764
DpnI GATC 6 cut(s) 150, 319, 366, 438, 739, 747
DpnII GATC 6 cut(s) 148, 317, 364, 436, 737, 745
EaeI YGGCCR 1 cut(s) 172
EagI CGGCCG 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EclXI CGGCCG 1 cut(s) 172
Eco52I CGGCCG 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 375, 752
EcoT22I ATGCAT 2 cut(s) 261, 310
FaeI CATG 3 cut(s) 53, 259, 371
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FatI CATG 3 cut(s) 49, 255, 367
FauI CCCGC 1 cut(s) 129
FbaI TGATCA 2 cut(s) 364, 745
Fnu4HI GCNGC 2 cut(s) 175, 634
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 175, 634
FspBI CTAG 1 cut(s) 588
GluI GCNGC 2 cut(s) 175, 634
HaeIII GGCC 2 cut(s) 163, 174
HapII CCGG 2 cut(s) 171, 474
Hin1II CATG 3 cut(s) 53, 259, 371
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 2 cut(s) 127, 677
HpaII CCGG 2 cut(s) 171, 474
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 4 cut(s) 364, 611, 682, 715
Hpy188III TCNNGA 4 cut(s) 137, 146, 588, 596
Hpy8I GTNNAC 1 cut(s) 373
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 3 cut(s) 24, 181, 608
HpyCH4III ACNGT 2 cut(s) 492, 628
HpyCH4V TGCA 8 cut(s) 259, 308, 373, 424, 456, 495, 502, 636
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 630
HpyF3I CTNAG 4 cut(s) 135, 620, 681, 764
Hsp92II CATG 3 cut(s) 53, 259, 371
KpnI GGTACC 1 cut(s) 480
Ksp22I TGATCA 2 cut(s) 364, 745
KspI CCGCGG 1 cut(s) 178
Kzo9I GATC 6 cut(s) 148, 317, 364, 436, 737, 745
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 1 cut(s) 620
LweI GCATC 4 cut(s) 200, 317, 406, 645
MaeI CTAG 1 cut(s) 588
MalI GATC 6 cut(s) 150, 319, 366, 438, 739, 747
MboI GATC 6 cut(s) 148, 317, 364, 436, 737, 745
MboII GAAGA 2 cut(s) 294, 305
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 1 cut(s) 737
MhlI GDGCHC 3 cut(s) 98, 299, 375
MluCI AATT 6 cut(s) 29, 219, 385, 440, 516, 600
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 5 cut(s) 153, 345, 426, 676, 768
Mph1103I ATGCAT 2 cut(s) 261, 310
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 2 cut(s) 54, 707
MspA1I CMGCKG 2 cut(s) 177, 633
MspI CCGG 2 cut(s) 171, 474
MspR9I CCNGG 2 cut(s) 377, 754
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 2 cut(s) 377, 754
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 174, 630
NdeII GATC 6 cut(s) 148, 317, 364, 436, 737, 745
NlaIII CATG 3 cut(s) 53, 259, 371
NlaIV GGNNCC 2 cut(s) 298, 478
NsiI ATGCAT 2 cut(s) 261, 310
NspI RCATGY 1 cut(s) 53
PfeI GAWTC 1 cut(s) 677
PkrI GCNGC 2 cut(s) 176, 635
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 375, 752
PspGI CCWGG 2 cut(s) 375, 752
PspN4I GGNNCC 2 cut(s) 298, 478
PsuI RGATCY 1 cut(s) 737
PvuII CAGCTG 1 cut(s) 633
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
RseI CAYNNNNRTG 2 cut(s) 54, 707
SacII CCGCGG 1 cut(s) 178
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 175, 634
Sau3AI GATC 6 cut(s) 148, 317, 364, 436, 737, 745
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 377, 754
SduI GDGCHC 3 cut(s) 98, 299, 375
SfaNI GCATC 4 cut(s) 200, 317, 406, 645
Sfr303I CCGCGG 1 cut(s) 178
SgrBI CCGCGG 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 54, 707
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 6 cut(s) 29, 219, 385, 440, 516, 600
SsiI CCGC 4 cut(s) 122, 175, 177, 184
SspI AATATT 1 cut(s) 460
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 2 cut(s) 375, 752
TaaI ACNGT 2 cut(s) 492, 628
TaqI TCGA 3 cut(s) 316, 597, 662
TasI AATT 6 cut(s) 29, 219, 385, 440, 516, 600
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 497
TseI GCWGC 1 cut(s) 633
TspDTI ATGAA 1 cut(s) 669
TspRI CASTG 1 cut(s) 497
VneI GTGCAC 1 cut(s) 371
XapI RAATTY 1 cut(s) 600
XbaI TCTAGA 1 cut(s) 587
XceI RCATGY 1 cut(s) 53
XspI CTAG 1 cut(s) 588
Zsp2I ATGCAT 2 cut(s) 261, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.