Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011780

Physical Location & Seq

Genomic Coordinates Reverse (-)

11021330 .. 11025466

Gene Structure 4137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGACGATCCCACGGCGCCACCGAGAACCCCATCGTCGTCTTCCTCCCAGCTCAATACGCCTCCAACACTGCTCCGCACTCCTCAGGCCCTTCGATCGCTAACCCCATCTCGGCACATCGACCGCCTGATCAACTTCAACCACCACCAATCGCCGTCCAGGACCATCTACTCCGATAGGTTCATCCCCAGTAGATCCGGCTCCAACTTCCCCCTCTTCGACATCTCCAATACTCCATCCGAGGGCCGCAATGACTCGTCGAGCGCCTACGGCACTCTCCTACGCGCTGCCCTCTTTGGCCCTGACTCCGGTGGCGTCGTCCCTCCGGCGACGCCTGAGAAAAGGAGCGCGATTCAGATGAACCCGCCTAGTCCCAACATCTTCCGGTTCAAGACCGAGACTCGCCGATCAATGCACTCGCTTTCCCCTTTTGGGTTCGACGATGTGGTCACCGGGGTTCACCATGGCCCGGTCAAGGCTCCTCGGAAGGTCCCTCGGTCGCCTTACAAGGTTTTGGATGCACCTGCTTTGCAAGATGATTTCTATCTGAATCTTGTCGACTGGTCTTCGCACAATGTGCTTGCCGTTGGGTTGGGAAATTGTGTTTATTTATGGAATGCTTGTAGTAGCAAGGTAACTAAGTTATGTGACTTGGGGATTGATGATAGTGTCTGTTCCGTTGGCTGGGCTCAACGTGGAACTCATCTTGCGGTTGGAACTAGCAATGGAAATGTCCAAATATGGGATGCATCACGCTGTAGGAGGGTAAGAACTATGGAGGGCCATCGACTACGCATTGGGGCCTTAGCCTGGAGTTCATCTATGCTGTCTTCTGGTAGCCGGGACAAGACTATTCTTCAACGTGATATTCGTGCTCAGGAAGATTTTGTTAGCAAACTCTCCGGACACAAGTCAGAGGTTTGCGGACTGAAGTGGTCTTATGATAACCGTGAGCTGGCATCTGGTGGGAATGATAATAGGCTTTTTGTTTGGAATCAACATTCAACTCAACCGGTGCTCAAATACTGTGAGCATACTGCAGCTGTGAAAGCTATTGCATGGTCTCCCCATCTTCATGGGCTTCTTGCGTCTGGGGGAGGAACTGCAGACCGATGTATTCGCTTCTGGAATACAACCACCAACTCGCATTTGAGTTGCATGGACACTGGAAGTCAGGTATGCAATCTTGTGTGGTCGAAAAATGTCAATGAACTAGTCAGCACCCATGGGTACTCCCAAAATCAGATAATAGTTTGGAGATATCCCACCATGTCAAAGCTTGCAACTCTTACGGGCCATTCATACAGAGTTCTTTATCTTGCCATCTCGCCTGATGGACAGACAATTGTCACTGGAGCAGGCGATGAAACACTAAGATTTTGGAACGTGTTTCCTTCCCCTAAGTCCCAGAACACAGAAAGTGAAATTGGAGCATCATCTCTTGGAAGAACGGTTATCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008361 GO:0009058 GO:0009059 GO:0009653 GO:0009825 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010026 GO:0010073 GO:0010074 GO:0010090 GO:0010091 GO:0010492 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0022402 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0034641 GO:0034645 GO:0040007 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045740 GO:0045787 GO:0045935 GO:0046483 GO:0048468 GO:0048507 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051726 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090304 GO:0090329 GO:0090558 GO:0090626 GO:0098727 GO:1901360 GO:1901576 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04120 ko04914 map04110 map04111 map04120 map04914

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

488

Amino Acids

53.62

Weight (kDa)

9.36

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	172 - 461	2.1e-127	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	184 - 273	1.5e-08	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	190 - 355	3.7e-17	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st	PF23389	192 - 285	1.1e-13	WDR19 first beta-propeller
Beta-prop_WDR3_1st	PF25173	193 - 294	2.6e-13	WDR3 first beta-propeller domain
WDR55	PF24796	219 - 466	5.2e-11	WDR55
Beta-prop_WDR5	PF25175	221 - 392	5.3e-24	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	222 - 294	1.8e-09	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	224 - 396	4.9e-11	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	224 - 462	8.5e-16	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	274 - 462	2.4e-17	Prp19 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	290 - 383	4.4e-10	CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st	PF24817	291 - 360	2.4e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	295 - 407	1.8e-14	WDR3 first beta-propeller domain
WD40	PF00400	296 - 332	4.3e-07	WD domain, G-beta repeat
WD40_Gbeta	PF25391	298 - 466	2.2e-12	G protein beta WD-40 repeat protein
Beta-prop_Aladin	PF25460	300 - 463	2.8e-08	Aladin seven-bladed propeller
Beta-prop_THOC3	PF25174	303 - 409	7.7e-19	THOC3 beta-propeller domain
Beta-prop_EML	PF23409	342 - 464	2.6e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	345 - 463	2.1e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	345 - 463	3.5e-13	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	368 - 464	5.4e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	369 - 470	2.4e-08	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	391 - 463	2.3e-08	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	412 - 463	6.1e-08	THOC3 beta-propeller domain
WD40	PF00400	426 - 462	1.3e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11920 AT4G22910
fragaria_vesca	FvH4_5g01220 FvH4_5g01220
malus_domestica	MD00G1131600.v1.1 MD04G1070400.v1.1 MD11G1180200.v1.1 MD13G1123600.v1.1
prunus_persica	Prupe.5G087300_v2.0.a1
pyrus_communis	pycom04g06380 pycom06g06850
rosa_chinensis	RchiOBHm_Chr7g0199871
rosa_laevigata	RLG00000003764
rosa_multiflora	Rmu_sc0002748.1_g000015
rosa_roxburghii	Rroxscaffold_3G00256420
rosa_rugosa	Rorug07G0056700
rosa_samantha	Rh7AG181900 Rh7CG191500
rosa_wichuraiana	Rw7G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
AasI	GACNNNNNNGTC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	532
AccB1I	GGYRCC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	2 cut(s)	285, 350
AccIII	TCCGGA	1 cut(s)	902
AciI	CCGC	6 cut(s)	76, 124, 247, 365, 710, 924
AclWI	GGATC	2 cut(s)	2, 189
AcuI	CTGAAG	1 cut(s)	950
AcyI	GRCGYC	3 cut(s)	17, 315, 332
AdeI	CACNNNGTG	1 cut(s)	577
AfaI	GTAC	1 cut(s)	1232
AflIII	ACRYGT	1 cut(s)	1386
AgeI	ACCGGT	1 cut(s)	1012
AgsI	TTSAA	4 cut(s)	139, 391, 860, 1005
AhlI	ACTAGT	1 cut(s)	1213
AjnI	CCWGG	2 cut(s)	158, 809
AjuI	GAANNNNNNNTTGG	2 cut(s)	1410, 1442
AluBI	AGCT	5 cut(s)	52, 955, 1043, 1052, 1279
AluI	AGCT	5 cut(s)	52, 955, 1043, 1052, 1279
Alw21I	GWGCWC	2 cut(s)	877, 1020
Alw26I	GTCTC	2 cut(s)	392, 1068
AlwI	GGATC	2 cut(s)	2, 189
Aor13HI	TCCGGA	1 cut(s)	902
AoxI	GGCC	7 cut(s)	87, 244, 298, 466, 781, 801, 1294
ApeKI	GCWGC	2 cut(s)	287, 1040
AsiGI	ACCGGT	1 cut(s)	1012
AspLEI	GCGC	4 cut(s)	19, 266, 287, 350
AspS9I	GGNCC	9 cut(s)	88, 162, 244, 299, 467, 490, 781, 801, 1294
AsuC2I	CCSGG	3 cut(s)	454, 470, 842
AsuHPI	GGTGA	2 cut(s)	442, 452
AvaII	GGWCC	2 cut(s)	162, 490
AxyI	CCTNAGG	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	691
BbsI	GAAGAC	3 cut(s)	33, 558, 822
Bbv12I	GWGCWC	2 cut(s)	877, 1020
BbvI	GCAGC	2 cut(s)	274, 1052
BccI	CCATC	8 cut(s)	40, 115, 173, 244, 792, 1077, 1328, 1331
BceAI	ACGGC	4 cut(s)	30, 139, 286, 569
BciT130I	CCWGG	2 cut(s)	160, 811
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	3 cut(s)	454, 470, 842
BcoDI	GTCTC	2 cut(s)	392, 1068
BcuI	ACTAGT	1 cut(s)	1213
BfaI	CTAG	3 cut(s)	369, 720, 1214
BfmI	CTRYAG	3 cut(s)	757, 1038, 1104
BfoI	RGCGCY	2 cut(s)	20, 267
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	3 cut(s)	247, 288, 1041
BlsI	GCNGC	3 cut(s)	248, 289, 1042
Bme1390I	CCNGG	5 cut(s)	160, 454, 470, 811, 842
Bme18I	GGWCC	2 cut(s)	162, 490
BmgT120I	GGNCC	9 cut(s)	88, 162, 244, 299, 467, 490, 781, 801, 1294
BmiI	GGNNCC	5 cut(s)	18, 202, 480, 492, 802
BmrFI	CCNGG	5 cut(s)	160, 454, 470, 811, 842
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	5 cut(s)	508, 736, 758, 968, 1442
BmuI	ACTGGG	1 cut(s)	183
BoxI	GACNNNNGTC	2 cut(s)	910, 1346
BpiI	GAAGAC	3 cut(s)	33, 558, 822
BpmI	CTGGAG	2 cut(s)	832, 1374
Bpu10I	CCTNAGC	2 cut(s)	805, 876
BpuMI	CCSGG	3 cut(s)	454, 470, 842
BsaBI	GATNNNNATC	1 cut(s)	543
BsaHI	GRCGYC	3 cut(s)	17, 315, 332
BsaI	GGTCTC	1 cut(s)	1068
BsaJI	CCNNGG	7 cut(s)	12, 240, 453, 463, 482, 494, 1225
BsaWI	WCCGGW	5 cut(s)	308, 384, 902, 1012, 1458
Bse118I	RCCGGY	1 cut(s)	1012
Bse1I	ACTGG	4 cut(s)	189, 566, 1171, 1357
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	2 cut(s)	256, 730
Bse8I	GATNNNNATC	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	902
BseBI	CCWGG	2 cut(s)	160, 811
BseDI	CCNNGG	7 cut(s)	12, 240, 453, 463, 482, 494, 1225
BseGI	GGATG	4 cut(s)	183, 236, 523, 751
BseJI	GATNNNNATC	1 cut(s)	543
BseMI	GCAATG	2 cut(s)	256, 730
BseMII	CTCAG	3 cut(s)	98, 327, 890
BseNI	ACTGG	4 cut(s)	189, 566, 1171, 1357
BseRI	GAGGAG	2 cut(s)	72, 471
BseXI	GCAGC	2 cut(s)	274, 1052
BseYI	CCCAGC	2 cut(s)	48, 684
Bsh1236I	CGCG	2 cut(s)	285, 350
Bsh1285I	CGRYCG	3 cut(s)	98, 124, 500
BshFI	GGCC	7 cut(s)	89, 246, 300, 468, 783, 803, 1296
BshNI	GGYRCC	1 cut(s)	16
BshTI	ACCGGT	1 cut(s)	1012
BsiEI	CGRYCG	3 cut(s)	98, 124, 500
BsiHKAI	GWGCWC	2 cut(s)	877, 1020
BslFI	GGGAC	5 cut(s)	305, 357, 476, 857, 1390
BsmAI	GTCTC	2 cut(s)	392, 1068
BsmFI	GGGAC	5 cut(s)	305, 357, 476, 857, 1390
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	7 cut(s)	89, 246, 300, 468, 783, 803, 1296
Bso31I	GGTCTC	1 cut(s)	1068
Bsp1286I	GDGCHC	3 cut(s)	691, 877, 1020
Bsp13I	TCCGGA	1 cut(s)	902
Bsp143I	GATC	5 cut(s)	7, 95, 129, 194, 407
Bsp19I	CCATGG	2 cut(s)	463, 1225
BspACI	CCGC	6 cut(s)	76, 124, 247, 365, 710, 924
BspANI	GGCC	7 cut(s)	89, 246, 300, 468, 783, 803, 1296
BspCNI	CTCAG	3 cut(s)	97, 328, 889
BspEI	TCCGGA	1 cut(s)	902
BspFNI	CGCG	2 cut(s)	285, 350
BspLI	GGNNCC	5 cut(s)	18, 202, 480, 492, 802
BspMAI	CTGCAG	2 cut(s)	1042, 1108
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	2, 189
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	1068
BsrDI	GCAATG	2 cut(s)	256, 730
BsrFI	RCCGGY	1 cut(s)	1012
BsrI	ACTGG	4 cut(s)	189, 566, 1171, 1357
BssAI	RCCGGY	1 cut(s)	1012
BssECI	CCNNGG	7 cut(s)	12, 240, 453, 463, 482, 494, 1225
BssMI	GATC	5 cut(s)	7, 95, 129, 194, 407
BssNI	GRCGYC	3 cut(s)	17, 315, 332
BssT1I	CCWWGG	2 cut(s)	463, 1225
Bst2UI	CCWGG	2 cut(s)	160, 811
Bst4CI	ACNGT	3 cut(s)	950, 1028, 1453
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	3 cut(s)	17, 315, 332
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	4 cut(s)	582, 957, 1281, 1360
BstDEI	CTNAG	7 cut(s)	84, 336, 639, 805, 876, 1373, 1401
BstDSI	CCRYGG	3 cut(s)	12, 463, 1225
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	4 cut(s)	183, 236, 523, 751
BstFNI	CGCG	2 cut(s)	285, 350
BstH2I	RGCGCY	2 cut(s)	20, 267
BstHHI	GCGC	4 cut(s)	19, 266, 287, 350
BstKTI	GATC	5 cut(s)	10, 98, 132, 197, 410
BstMAI	GTCTC	2 cut(s)	392, 1068
BstMBI	GATC	5 cut(s)	7, 95, 129, 194, 407
BstMCI	CGRYCG	3 cut(s)	98, 124, 500
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 270, 577, 1049
BstNI	CCWGG	2 cut(s)	160, 811
BstPAI	GACNNNNGTC	2 cut(s)	910, 1346
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	5 cut(s)	158, 452, 468, 809, 840
BstSFI	CTRYAG	3 cut(s)	757, 1038, 1104
BstUI	CGCG	2 cut(s)	285, 350
BstV1I	GCAGC	2 cut(s)	274, 1052
BstV2I	GAAGAC	3 cut(s)	33, 558, 822
BstX2I	RGATCY	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	1076
BstYI	RGATCY	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	7 cut(s)	89, 246, 300, 468, 783, 803, 1296
BtgI	CCRYGG	3 cut(s)	12, 463, 1225
BtgZI	GCGATG	1 cut(s)	1377
BtsCI	GGATG	4 cut(s)	183, 236, 523, 751
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	3 cut(s)	68, 1164, 1350
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	4 cut(s)	582, 957, 1281, 1360
CfoI	GCGC	4 cut(s)	19, 266, 287, 350
Cfr10I	RCCGGY	1 cut(s)	1012
Cfr13I	GGNCC	9 cut(s)	88, 162, 244, 299, 467, 490, 781, 801, 1294
CseI	GACGC	3 cut(s)	304, 340, 1077
Csp6I	GTAC	1 cut(s)	1231
CspAI	ACCGGT	1 cut(s)	1012
CviAII	CATG	6 cut(s)	464, 1059, 1076, 1159, 1226, 1270
CviQI	GTAC	1 cut(s)	1231
DdeI	CTNAG	7 cut(s)	84, 336, 639, 805, 876, 1373, 1401
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	5 cut(s)	9, 97, 131, 196, 409
DpnII	GATC	5 cut(s)	7, 95, 129, 194, 407
DraIII	CACNNNGTG	1 cut(s)	577
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	2 cut(s)	463, 1225
Eco24I	GRGCYC	1 cut(s)	691
Eco31I	GGTCTC	1 cut(s)	1068
Eco32I	GATATC	1 cut(s)	1262
Eco47I	GGWCC	2 cut(s)	162, 490
Eco57I	CTGAAG	1 cut(s)	950
Eco81I	CCTNAGG	1 cut(s)	84
Eco91I	GGTNACC	1 cut(s)	448
EcoO109I	RGGNCCY	3 cut(s)	88, 490, 801
EcoO65I	GGTNACC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	158, 809
EcoRV	GATATC	1 cut(s)	1262
EcoT14I	CCWWGG	2 cut(s)	463, 1225
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	691
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	463, 1225
FaeI	CATG	6 cut(s)	467, 1062, 1079, 1162, 1229, 1273
FaqI	GGGAC	5 cut(s)	305, 357, 476, 857, 1390
FatI	CATG	6 cut(s)	463, 1058, 1075, 1158, 1225, 1269
FauI	CCCGC	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	247, 288, 1041
FokI	GGATG	4 cut(s)	170, 223, 530, 758
FriOI	GRGCYC	1 cut(s)	691
Fsp4HI	GCNGC	3 cut(s)	247, 288, 1041
FspBI	CTAG	3 cut(s)	369, 720, 1214
GlaI	GCGC	4 cut(s)	18, 265, 286, 349
GluI	GCNGC	3 cut(s)	247, 288, 1041
GsaI	CCCAGC	2 cut(s)	52, 688
GsuI	CTGGAG	2 cut(s)	832, 1374
HaeII	RGCGCY	2 cut(s)	20, 267
HaeIII	GGCC	7 cut(s)	89, 246, 300, 468, 783, 803, 1296
HgaI	GACGC	3 cut(s)	304, 340, 1077
HhaI	GCGC	4 cut(s)	19, 266, 287, 350
Hin1I	GRCGYC	3 cut(s)	17, 315, 332
Hin1II	CATG	6 cut(s)	467, 1062, 1079, 1162, 1229, 1273
Hin6I	GCGC	4 cut(s)	17, 264, 285, 348
HinP1I	GCGC	4 cut(s)	17, 264, 285, 348
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	1 cut(s)	1277
HinfI	GANTC	6 cut(s)	254, 305, 352, 400, 550, 994
HphI	GGTGA	2 cut(s)	442, 452
Hpy166II	GTNNAC	2 cut(s)	460, 559
Hpy188I	TCNGA	7 cut(s)	175, 241, 357, 486, 549, 916, 1245
Hpy188III	TCNNGA	4 cut(s)	391, 878, 903, 1126
Hpy8I	GTNNAC	2 cut(s)	460, 559
Hpy99I	CGWCG	5 cut(s)	40, 262, 320, 334, 443
HpyAV	CCTTC	3 cut(s)	101, 481, 1404
HpyCH4III	ACNGT	3 cut(s)	950, 1028, 1453
HpyCH4IV	ACGT	3 cut(s)	694, 862, 1386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 270, 577, 1049
HpyF3I	CTNAG	7 cut(s)	84, 336, 639, 805, 876, 1373, 1401
HpySE526I	ACGT	3 cut(s)	694, 862, 1386
Hsp92I	GRCGYC	3 cut(s)	17, 315, 332
Hsp92II	CATG	6 cut(s)	467, 1062, 1079, 1162, 1229, 1273
HspAI	GCGC	4 cut(s)	17, 264, 285, 348
KasI	GGCGCC	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	902
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	7, 95, 129, 194, 407
LmnI	GCTCC	6 cut(s)	78, 206, 345, 484, 1355, 1430
Lsp1109I	GCAGC	2 cut(s)	274, 1052
LweI	GCATC	5 cut(s)	508, 736, 758, 968, 1442
MaeI	CTAG	3 cut(s)	369, 720, 1214
MaeII	ACGT	3 cut(s)	694, 862, 1386
MaeIII	GTNAC	4 cut(s)	448, 634, 647, 1348
MalI	GATC	5 cut(s)	9, 97, 131, 196, 409
MboI	GATC	5 cut(s)	7, 95, 129, 194, 407
MboII	GAAGA	9 cut(s)	33, 208, 373, 558, 822, 848, 893, 1064, 1458
MfeI	CAATTG	1 cut(s)	1344
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	3 cut(s)	691, 877, 1020
MluCI	AATT	3 cut(s)	598, 1344, 1425
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	3 cut(s)	248, 299, 394
MmeI	TCCRAC	3 cut(s)	89, 228, 694
Mph1103I	ATGCAT	1 cut(s)	751
MroI	TCCGGA	1 cut(s)	902
MslI	CAYNNNNRTG	1 cut(s)	1074
MspA1I	CMGCKG	1 cut(s)	1043
MspR9I	CCNGG	5 cut(s)	160, 454, 470, 811, 842
MunI	CAATTG	1 cut(s)	1344
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	2 cut(s)	160, 811
MvnI	CGCG	2 cut(s)	285, 350
MwoI	GCNNNNNNNGC	4 cut(s)	58, 270, 577, 1049
NarI	GGCGCC	1 cut(s)	17
NciI	CCSGG	3 cut(s)	454, 470, 842
NcoI	CCATGG	2 cut(s)	463, 1225
NdeII	GATC	5 cut(s)	7, 95, 129, 194, 407
NlaIII	CATG	6 cut(s)	467, 1062, 1079, 1162, 1229, 1273
NlaIV	GGNNCC	5 cut(s)	18, 202, 480, 492, 802
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	3 cut(s)	448, 647, 1348
NsiI	ATGCAT	1 cut(s)	751
PaqCI	CACCTGC	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 868
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	3 cut(s)	352, 550, 994
PfoI	TCCNGGA	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	1012
PkrI	GCNGC	3 cut(s)	248, 289, 1042
Ple19I	CGATCG	1 cut(s)	98
PleI	GAGTC	3 cut(s)	248, 299, 394
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	3 cut(s)	248, 299, 394
PpuMI	RGGWCCY	1 cut(s)	490
PshAI	GACNNNNGTC	2 cut(s)	910, 1346
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	158, 809
PspEI	GGTNACC	1 cut(s)	448
PspFI	CCCAGC	2 cut(s)	48, 684
PspGI	CCWGG	2 cut(s)	158, 809
PspN4I	GGNNCC	5 cut(s)	18, 202, 480, 492, 802
PspPI	GGNCC	9 cut(s)	88, 162, 244, 299, 467, 490, 781, 801, 1294
PspPPI	RGGWCCY	1 cut(s)	490
PstI	CTGCAG	2 cut(s)	1042, 1108
PsuI	RGATCY	1 cut(s)	194
PvuI	CGATCG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	1232
RsaNI	GTAC	1 cut(s)	1231
RseI	CAYNNNNRTG	1 cut(s)	1074
SalI	GTCGAC	1 cut(s)	557
SatI	GCNGC	3 cut(s)	247, 288, 1041
Sau3AI	GATC	5 cut(s)	7, 95, 129, 194, 407
Sau96I	GGNCC	9 cut(s)	88, 162, 244, 299, 467, 490, 781, 801, 1294
SchI	GAGTC	3 cut(s)	248, 299, 394
ScrFI	CCNGG	5 cut(s)	160, 454, 470, 811, 842
SduI	GDGCHC	3 cut(s)	691, 877, 1020
SfaNI	GCATC	5 cut(s)	508, 736, 758, 968, 1442
SfcI	CTRYAG	3 cut(s)	757, 1038, 1104
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	2 cut(s)	162, 490
SmiMI	CAYNNNNRTG	1 cut(s)	1074
SpeI	ACTAGT	1 cut(s)	1213
Sse9I	AATT	3 cut(s)	598, 1344, 1425
SsiI	CCGC	6 cut(s)	76, 124, 247, 365, 710, 924
SspDI	GGCGCC	1 cut(s)	16
SspMI	CTAG	3 cut(s)	369, 720, 1214
StyD4I	CCNGG	5 cut(s)	158, 452, 468, 809, 840
StyI	CCWWGG	2 cut(s)	463, 1225
TaaI	ACNGT	3 cut(s)	950, 1028, 1453
TaiI	ACGT	3 cut(s)	697, 865, 1389
TaqI	TCGA	8 cut(s)	94, 120, 219, 260, 438, 558, 787, 1196
TaqII	GACCGA	3 cut(s)	410, 486, 1125
TasI	AATT	3 cut(s)	598, 1344, 1425
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	3 cut(s)	352, 550, 994
TscAI	CASTG	3 cut(s)	75, 1171, 1357
TseFI	GTSAC	3 cut(s)	448, 647, 1348
TseI	GCWGC	2 cut(s)	287, 1040
Tsp45I	GTSAC	3 cut(s)	448, 647, 1348
TspDTI	ATGAA	7 cut(s)	172, 374, 807, 1064, 1224, 1290, 1380
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	3 cut(s)	75, 1171, 1357
VpaK11BI	GGWCC	2 cut(s)	162, 490
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	3 cut(s)	369, 720, 1214
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.