Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014495

Physical Location & Seq

Genomic Coordinates Reverse (-)

12765956 .. 12769705

Gene Structure 3750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACAAAGAATCAAGAGAAAATTCACCAAAAAGAAGAAATGAAGCTGAAAGTATACGTCGATAGATTGTCACAACCATCTCGTGCAATATTAATCTTCCTCAAGGTAAATGGAATAGAGTTCGAGGAGATTAAGATGGACATATCCAAACGTCAACACTTGTCTCCTGAATTCAAAAAAATAAACCCTATGGGACAAGTTCCTGCTATTGCTGATGGGAGATTTAATCTCTTTGAAAGTCATGCAATTCTTGTTTATCTTGCTTGTGCATTTCCTGGAGTAGCAGATCATTGGTATCCTGCTGACCTTTTCAGGAGAGCTAAAATCAACTCAGTATTGGATTGGCATCACTCTAACTTACGCCGTGGAGCAGCACCATATGTTCTAAATACTGTACTTGCACCCGTGCTTGGACTTCCATTGAATCCACAAGCAGCTGCTGAAGCTGAGAAACTTTTGTCCTCCTCTTTGTCTAAAATAGAGTCGATTTGGCTCCAAGGTAATGGAAAATTCTTGGTGGGTGGCCTCAAACCATCCATAGCAGATCTCAGCATGGTTTGTGAAATCATGCAACTTGAGCTTGTAGATGAGAAGGACCGCAATCGTATACTTGGCCCGCACAAGAGAGTTCTACAGTGGATTGAGGATACTAAAAATGCGACAAGACCTCACTTTGATGAAGTACATGAAGTTCTCTTCAGGGCAAAAACAAGATTTCAAGAGCGGCGGTTGATGGGAGCAAGCAACAAGACCGATTCCAGCGATAGAGCAGCTGTGCGTTCAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N

Protein Analysis

264

Amino Acids

29.96

Weight (kDa)

9.45

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	14 - 88	1.2e-14	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	20 - 93	2.7e-08	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	27 - 88	4e-09	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41210
fragaria_vesca	FvH4_5g02100
malus_domestica	MD06G1081000.v1.1
prunus_persica	Prupe.5G098100_v2.0.a1
pyrus_communis	pycom06g07800
rosa_chinensis	RchiOBHm_Chr7g0198031 RchiOBHm_Chr7g0198101
rosa_laevigata	RLG00000003889 RLG00000003891
rosa_multiflora	Rmu_sc0000221.1_g000031
rosa_roxburghii	Rroxscaffold_3G00258000
rosa_rugosa	Rorug07G0045600
rosa_samantha	Rh7AG168900 Rh7BG172000 Rh7CG178500 Rh7DG171300
rosa_wichuraiana	Rw7G014770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	724
AccI	GTMKAC	2 cut(s)	54, 607
AciI	CCGC	4 cut(s)	598, 617, 724, 727
AcsI	RAATTY	3 cut(s)	21, 170, 509
AcuI	CTGAAG	2 cut(s)	462, 682
AfaI	GTAC	2 cut(s)	396, 684
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	5 cut(s)	175, 236, 424, 719, 783
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	6 cut(s)	46, 320, 437, 446, 580, 773
AluI	AGCT	6 cut(s)	46, 320, 437, 446, 580, 773
Alw26I	GTCTC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	523, 613
ApeKI	GCWGC	4 cut(s)	371, 434, 437, 770
ApoI	RAATTY	3 cut(s)	21, 170, 509
AseI	ATTAAT	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	595, 614
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	595
BauI	CACGAG	1 cut(s)	81
BbvI	GCAGC	4 cut(s)	383, 424, 446, 782
BccI	CCATC	5 cut(s)	85, 130, 209, 541, 727
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	2 cut(s)	306, 640
BcoDI	GTCTC	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	632
BfuI	GTATCC	2 cut(s)	306, 640
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	5 cut(s)	372, 435, 438, 725, 771
BlsI	GCNGC	5 cut(s)	373, 436, 439, 726, 772
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	2 cut(s)	595, 614
BmiI	GGNNCC	1 cut(s)	494
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	86, 596
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	364, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse8I	GATNNNNATC	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	364, 496
BseGI	GGATG	1 cut(s)	533
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	345, 438, 562
BseRI	GAGGAG	2 cut(s)	140, 454
BseXI	GCAGC	4 cut(s)	383, 424, 446, 782
BshFI	GGCC	2 cut(s)	525, 615
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	525, 615
Bsp143I	GATC	2 cut(s)	286, 544
BspACI	CCGC	4 cut(s)	598, 617, 724, 727
BspANI	GGCC	2 cut(s)	525, 615
BspCNI	CTCAG	3 cut(s)	344, 439, 561
BspLI	GGNNCC	1 cut(s)	494
BsrBI	CCGCTC	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	364, 496
BssMI	GATC	2 cut(s)	286, 544
BssNAI	GTATAC	2 cut(s)	55, 608
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	496
Bst1107I	GTATAC	2 cut(s)	55, 608
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	394, 636
Bst6I	CTCTTC	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	617, 742
BstDEI	CTNAG	3 cut(s)	331, 447, 548
BstDSI	CCRYGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	533
BstKTI	GATC	2 cut(s)	289, 547
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	286, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 577
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	632
BstV1I	GCAGC	4 cut(s)	383, 424, 446, 782
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	544
BstZ17I	GTATAC	2 cut(s)	55, 608
BsuI	GTATCC	2 cut(s)	306, 640
BsuRI	GGCC	2 cut(s)	525, 615
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	533
BtsIMutI	CAGTG	1 cut(s)	641
Cac8I	GCNNGC	2 cut(s)	617, 742
CaiI	CAGNNNCTG	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	595, 614
Csp6I	GTAC	2 cut(s)	395, 683
CviAII	CATG	4 cut(s)	242, 553, 568, 686
CviJI	RGCY	9 cut(s)	46, 320, 437, 446, 493, 525, 580, 615, 773
CviKI_1	RGCY	9 cut(s)	46, 320, 437, 446, 493, 525, 580, 615, 773
CviQI	GTAC	2 cut(s)	395, 683
DdeI	CTNAG	3 cut(s)	331, 447, 548
DpnI	GATC	2 cut(s)	288, 546
DpnII	GATC	2 cut(s)	286, 544
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	496
Eco47I	GGWCC	1 cut(s)	595
Eco57I	CTGAAG	2 cut(s)	462, 682
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	4 cut(s)	245, 556, 571, 689
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	4 cut(s)	241, 552, 567, 685
FauI	CCCGC	1 cut(s)	624
FauNDI	CATATG	1 cut(s)	379
FblI	GTMKAC	2 cut(s)	54, 607
Fnu4HI	GCNGC	5 cut(s)	372, 435, 438, 725, 771
FokI	GGATG	1 cut(s)	520
Fsp4HI	GCNGC	5 cut(s)	372, 435, 438, 725, 771
GluI	GCNGC	5 cut(s)	372, 435, 438, 725, 771
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	525, 615
Hin1II	CATG	4 cut(s)	245, 556, 571, 689
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HinfI	GANTC	4 cut(s)	10, 424, 482, 755
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	55, 155, 608
Hpy188III	TCNNGA	4 cut(s)	14, 167, 313, 719
Hpy8I	GTNNAC	3 cut(s)	55, 155, 608
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	2 cut(s)	394, 636
HpyCH4IV	ACGT	2 cut(s)	57, 151
HpyCH4V	TGCA	5 cut(s)	86, 245, 269, 401, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 577
HpyF3I	CTNAG	3 cut(s)	331, 447, 548
HpySE526I	ACGT	2 cut(s)	57, 151
Hsp92II	CATG	4 cut(s)	245, 556, 571, 689
Kzo9I	GATC	2 cut(s)	286, 544
LmnI	GCTCC	3 cut(s)	368, 498, 737
LpnPI	CCDG	8 cut(s)	180, 216, 261, 288, 298, 312, 685, 772
Lsp1109I	GCAGC	4 cut(s)	383, 424, 446, 782
LweI	GCATC	1 cut(s)	355
MaeII	ACGT	2 cut(s)	57, 151
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	2 cut(s)	288, 546
MbiI	CCGCTC	1 cut(s)	724
MboI	GATC	2 cut(s)	286, 544
MboII	GAAGA	3 cut(s)	47, 88, 688
MflI	RGATCY	1 cut(s)	544
MluCI	AATT	4 cut(s)	21, 170, 246, 509
MlyI	GAGTC	1 cut(s)	491
MnlI	CCTC	7 cut(s)	110, 118, 472, 475, 536, 637, 678
MseI	TTAA	3 cut(s)	92, 132, 225
MslI	CAYNNNNRTG	1 cut(s)	675
MspA1I	CMGCKG	2 cut(s)	437, 773
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	443, 577
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	286, 544
NlaIII	CATG	4 cut(s)	245, 556, 571, 689
NlaIV	GGNNCC	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	10, 424, 755
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	5 cut(s)	373, 436, 439, 726, 772
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	494
PspPI	GGNCC	2 cut(s)	595, 614
PsrI	GAACNNNNNNTAC	2 cut(s)	675, 707
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	2 cut(s)	437, 773
RsaI	GTAC	2 cut(s)	396, 684
RsaNI	GTAC	2 cut(s)	395, 683
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	3 cut(s)	92, 132, 225
SatI	GCNGC	5 cut(s)	372, 435, 438, 725, 771
Sau3AI	GATC	2 cut(s)	286, 544
Sau96I	GGNCC	2 cut(s)	595, 614
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	632
SinI	GGWCC	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	2 cut(s)	101, 575
SmoI	CTYRAG	2 cut(s)	101, 575
Sse9I	AATT	4 cut(s)	21, 170, 246, 509
SsiI	CCGC	4 cut(s)	598, 617, 724, 727
SspI	AATATT	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	2 cut(s)	394, 636
TaiI	ACGT	2 cut(s)	60, 154
TaqI	TCGA	3 cut(s)	60, 123, 485
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	4 cut(s)	21, 170, 246, 509
TatI	WGTACW	2 cut(s)	394, 682
TauI	GCSGC	1 cut(s)	727
TfiI	GAWTC	3 cut(s)	10, 424, 755
Tru1I	TTAA	3 cut(s)	92, 132, 225
Tru9I	TTAA	3 cut(s)	92, 132, 225
TscAI	CASTG	1 cut(s)	641
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	4 cut(s)	371, 434, 437, 770
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	3 cut(s)	56, 693, 702
TspRI	CASTG	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	595
VspI	ATTAAT	1 cut(s)	92
XapI	RAATTY	3 cut(s)	21, 170, 509
XmiI	GTMKAC	2 cut(s)	54, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.