pycom06g08410

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0012159
Physical Location & Seq
Reverse (-)
13544987 .. 13546124
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGTCCTCCTCCGATCTCTATGTCGTCGACGACTCCTTCTACCGCCACTCCACCACCCCAGAAATGGTGGACTTGCCATTCTTCTCCGAGCCATTCTCTCCCTTCTCGGACATTGACCTCCTCCAACTCCAAGCAATCTCCGACCAGCAAACCCAGCAAAACCCAGCTGACCAAAACTCCCCATCTCTCCTTTCTTCTTCTCCCCCAAGTTACCAGCTCGAAACCTTAAGCCTTTACCAACAAACCCAATTACCCCAAATCGATCAAAACTCTCCAAATTTGCCAATTGGGTTGCCGAATTTCTCCCCTTTTGATGCTCTGGAGGTCAAAACTGAACCCCATCAAGCTTTTGGGCCTCATACCTATGGCGGTGCAGAGAATGTGTTAAAGTTTATGCAGAGGAGCTACAGCAGCAACTGCTTTGACGGAAGTAGTAACAAGCCTGATTTTTGCTTCAAGCCAAGCTTTGATTCTCTCATGGAGTCACCAAGTTTTCAGAACCAAGCTTTTAGCTTGAGCTCTCCGGAAAGCAGCTTTTTGGCTGGTCAAATGAGAAGGGTTTCCAGCACTGGTGATTTGCAAAATTTTAGAACAAATCGTACTCCCAGAGAGAGCTCAGTGACGGCGGAAGTAGCTGCAAACTTCAAAATGGGGAGGTACAGTGCAGAAGAGAGGAAAGAGAGAATCTCAAAGTACAGAGCCAAAAGGTCACAGAGAAACTTCAACAAAACAATTAAGTATGCATGTCGAAAAACACTTGCGGACAACCGGCCCCGCATACGTGGCAGATTTGCACGCAACGACGAGACTGAAGAGATTCTCAAAGCTGCATGTTCATTTAATAGAGAAGAAGATGAAGATGAGCTCTGGGTAAAATATTTTTTCTTTTCACATTTTTGTGTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

303

Amino Acids

34.55

Weight (kDa)

5.54

Isoelectric Point (pI)

61.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 225 - 267 4.4e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63820 AT5G41380
fragaria_vesca FvH4_1g29660 FvH4_5g02850
malus_domestica MD06G1088000.v1.1 MD14G1108900.v1.1 MD14G1109100.v1.1
prunus_persica Prupe.5G104100_v2.0.a1
pyrus_communis pycom06g08410
rosa_chinensis RchiOBHm_Chr7g0197051
rosa_laevigata RLG00000003963
rosa_multiflora Rmu_sc0003411.1_g000005
rosa_roxburghii Rroxscaffold_3G00258700
rosa_rugosa Rorug07G0037300
rosa_samantha Rh7AG162200 Rh7BG164300 Rh7CG170400 Rh7DG163700
rosa_wichuraiana Rw7G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 523
AciI CCGC 5 cut(s) 43, 369, 626, 761, 775
AcsI RAATTY 3 cut(s) 277, 298, 583
AcuI CTGAAG 1 cut(s) 831
AfaI GTAC 3 cut(s) 601, 659, 695
AfiI CCNNNNNNNGG 1 cut(s) 64
AflII CTTAAG 1 cut(s) 226
AgsI TTSAA 3 cut(s) 457, 646, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
Alw21I GWGCWC 3 cut(s) 521, 617, 867
Alw26I GTCTC 1 cut(s) 800
AlwNI CAGNNNCTG 1 cut(s) 417
Aor13HI TCCGGA 1 cut(s) 523
AoxI GGCC 2 cut(s) 353, 770
ApeKI GCWGC 4 cut(s) 411, 531, 635, 827
ApoI RAATTY 3 cut(s) 277, 298, 583
Asp700I GAANNNNTTC 2 cut(s) 559, 816
AspS9I GGNCC 2 cut(s) 353, 771
AsuHPI GGTGA 2 cut(s) 477, 584
BanII GRGCYC 3 cut(s) 521, 617, 867
Bbv12I GWGCWC 3 cut(s) 521, 617, 867
BbvI GCAGC 4 cut(s) 423, 543, 622, 814
BccI CCATC 2 cut(s) 190, 348
BceAI ACGGC 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 800
BfmI CTRYAG 1 cut(s) 406
BfrI CTTAAG 1 cut(s) 226
BisI GCNGC 4 cut(s) 412, 532, 636, 828
BlsI GCNGC 4 cut(s) 413, 533, 637, 829
BmgT120I GGNCC 2 cut(s) 353, 771
BmiI GGNNCC 1 cut(s) 773
BmsI GCATC 1 cut(s) 304
BplI GAGNNNNNCTC 4 cut(s) 80, 112, 671, 703
BpmI CTGGAG 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 535
Bsa29I ATCGAT 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 782
BsaWI WCCGGW 1 cut(s) 523
BsaXI ACNNNNNCTCC 6 cut(s) 32, 62, 161, 191, 646, 676
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 768
Bse1I ACTGG 1 cut(s) 574
BseAI TCCGGA 1 cut(s) 523
BseCI ATCGAT 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 2 cut(s) 110, 415
BseXI GCAGC 4 cut(s) 423, 543, 622, 814
BseYI CCCAGC 2 cut(s) 153, 163
BsgI GTGCAG 2 cut(s) 393, 684
BshFI GGCC 2 cut(s) 355, 772
BshVI ATCGAT 1 cut(s) 261
BsiHKAI GWGCWC 3 cut(s) 521, 617, 867
BsiSI CCGG 2 cut(s) 524, 769
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 800
BsnI GGCC 2 cut(s) 355, 772
Bsp1286I GDGCHC 3 cut(s) 521, 617, 867
Bsp13I TCCGGA 1 cut(s) 523
Bsp143I GATC 2 cut(s) 13, 262
BspACI CCGC 5 cut(s) 43, 369, 626, 761, 775
BspANI GGCC 2 cut(s) 355, 772
BspCNI CTCAG 1 cut(s) 629
BspDI ATCGAT 1 cut(s) 261
BspEI TCCGGA 1 cut(s) 523
BspLI GGNNCC 1 cut(s) 773
BspTI CTTAAG 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 768
BsrI ACTGG 1 cut(s) 574
BssAI RCCGGY 1 cut(s) 768
BssMI GATC 2 cut(s) 13, 262
Bst4CI ACNGT 1 cut(s) 662
Bst6I CTCTTC 2 cut(s) 663, 807
BstAFI CTTAAG 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 417
BstBAI YACGTR 1 cut(s) 782
BstC8I GCNNGC 1 cut(s) 796
BstDEI CTNAG 1 cut(s) 616
BstKTI GATC 2 cut(s) 16, 265
BstMAI GTCTC 1 cut(s) 800
BstMBI GATC 2 cut(s) 13, 262
BstMWI GCNNNNNNNGC 5 cut(s) 154, 411, 417, 632, 783
BstNSI RCATGY 2 cut(s) 747, 834
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 4 cut(s) 423, 543, 622, 814
Bsu15I ATCGAT 1 cut(s) 261
BsuRI GGCC 2 cut(s) 355, 772
BsuTUI ATCGAT 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 567, 624, 667
Cac8I GCNNGC 1 cut(s) 796
CaiI CAGNNNCTG 1 cut(s) 417
Cfr10I RCCGGY 1 cut(s) 768
Cfr13I GGNCC 2 cut(s) 353, 771
ClaI ATCGAT 1 cut(s) 261
Csp6I GTAC 3 cut(s) 600, 658, 694
CviAII CATG 3 cut(s) 478, 744, 831
CviQI GTAC 3 cut(s) 600, 658, 694
DdeI CTNAG 1 cut(s) 616
DpnI GATC 2 cut(s) 15, 264
DpnII GATC 2 cut(s) 13, 262
Eam1104I CTCTTC 2 cut(s) 663, 807
EarI CTCTTC 2 cut(s) 663, 807
EciI GGCGGA 1 cut(s) 641
Ecl136II GAGCTC 3 cut(s) 519, 615, 865
Eco24I GRGCYC 3 cut(s) 521, 617, 867
Eco53kI GAGCTC 3 cut(s) 519, 615, 865
Eco57I CTGAAG 1 cut(s) 831
EcoICRI GAGCTC 3 cut(s) 519, 615, 865
EcoT22I ATGCAT 1 cut(s) 745
EcoT38I GRGCYC 3 cut(s) 521, 617, 867
FaeI CATG 3 cut(s) 481, 747, 834
FaiI YATR 9 cut(s) 21, 360, 366, 395, 479, 741, 745, 779, 832
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FatI CATG 3 cut(s) 477, 743, 830
FauI CCCGC 1 cut(s) 782
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 4 cut(s) 412, 532, 636, 828
FriOI GRGCYC 3 cut(s) 521, 617, 867
Fsp4HI GCNGC 4 cut(s) 412, 532, 636, 828
GluI GCNGC 4 cut(s) 412, 532, 636, 828
GsaI CCCAGC 2 cut(s) 157, 167
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 355, 772
HapII CCGG 2 cut(s) 524, 769
Hin1II CATG 3 cut(s) 481, 747, 834
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 3 cut(s) 345, 463, 504
HinfI GANTC 5 cut(s) 32, 470, 482, 684, 817
HpaII CCGG 2 cut(s) 524, 769
HphI GGTGA 2 cut(s) 477, 584
Hpy166II GTNNAC 2 cut(s) 28, 70
Hpy188I TCNGA 5 cut(s) 13, 88, 109, 142, 498
Hpy188III TCNNGA 2 cut(s) 320, 524
Hpy8I GTNNAC 2 cut(s) 28, 70
Hpy99I CGWCG 3 cut(s) 29, 32, 806
HpyAV CCTTC 3 cut(s) 46, 112, 549
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4IV ACGT 1 cut(s) 781
HpyCH4V TGCA 8 cut(s) 374, 397, 580, 638, 665, 743, 794, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 154, 411, 417, 632, 783
HpyF3I CTNAG 1 cut(s) 616
HpySE526I ACGT 1 cut(s) 781
Hsp92II CATG 3 cut(s) 481, 747, 834
Kpn2I TCCGGA 1 cut(s) 523
Kzo9I GATC 2 cut(s) 13, 262
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 4 cut(s) 423, 543, 622, 814
LweI GCATC 1 cut(s) 304
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 5 cut(s) 209, 434, 483, 619, 708
MalI GATC 2 cut(s) 15, 264
MboI GATC 2 cut(s) 13, 262
MboII GAAGA 8 cut(s) 73, 186, 189, 680, 824, 860, 863, 869
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 3 cut(s) 521, 617, 867
MluCI AATT 6 cut(s) 248, 277, 285, 298, 583, 732
MlyI GAGTC 2 cut(s) 26, 491
MmeI TCCRAC 2 cut(s) 148, 165
MnlI CCTC 9 cut(s) 16, 19, 128, 131, 316, 366, 393, 648, 666
Mph1103I ATGCAT 1 cut(s) 745
MroI TCCGGA 1 cut(s) 523
MroXI GAANNNNTTC 2 cut(s) 559, 816
MseI TTAA 5 cut(s) 227, 386, 735, 840, 907
MslI CAYNNNNRTG 2 cut(s) 363, 897
MspA1I CMGCKG 1 cut(s) 167
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 2 cut(s) 524, 769
MunI CAATTG 1 cut(s) 285
MwoI GCNNNNNNNGC 5 cut(s) 154, 411, 417, 632, 783
NdeII GATC 2 cut(s) 13, 262
NlaIII CATG 3 cut(s) 481, 747, 834
NlaIV GGNNCC 1 cut(s) 773
NmuCI GTSAC 3 cut(s) 483, 619, 708
NsiI ATGCAT 1 cut(s) 745
NspI RCATGY 2 cut(s) 747, 834
PdmI GAANNNNTTC 2 cut(s) 559, 816
PfeI GAWTC 3 cut(s) 470, 684, 817
PkrI GCNGC 4 cut(s) 413, 533, 637, 829
PleI GAGTC 2 cut(s) 26, 490
PpsI GAGTC 2 cut(s) 26, 490
Ppu21I YACGTR 1 cut(s) 782
Psp124BI GAGCTC 3 cut(s) 521, 617, 867
PspFI CCCAGC 2 cut(s) 153, 163
PspN4I GGNNCC 1 cut(s) 773
PspPI GGNCC 2 cut(s) 353, 771
PsrI GAACNNNNNNTAC 2 cut(s) 583, 615
PstNI CAGNNNCTG 1 cut(s) 417
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 3 cut(s) 601, 659, 695
RsaNI GTAC 3 cut(s) 600, 658, 694
RseI CAYNNNNRTG 2 cut(s) 363, 897
SacI GAGCTC 3 cut(s) 521, 617, 867
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 5 cut(s) 227, 386, 735, 840, 907
SatI GCNGC 4 cut(s) 412, 532, 636, 828
Sau3AI GATC 2 cut(s) 13, 262
Sau96I GGNCC 2 cut(s) 353, 771
SchI GAGTC 2 cut(s) 26, 491
SduI GDGCHC 3 cut(s) 521, 617, 867
SfaNI GCATC 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 406
SgrDI CGTCGACG 1 cut(s) 26
SmiMI CAYNNNNRTG 2 cut(s) 363, 897
SmlI CTYRAG 2 cut(s) 226, 514
SmoI CTYRAG 2 cut(s) 226, 514
Sse9I AATT 6 cut(s) 248, 277, 285, 298, 583, 732
SsiI CCGC 5 cut(s) 43, 369, 626, 761, 775
SspI AATATT 1 cut(s) 878
SstI GAGCTC 3 cut(s) 521, 617, 867
TaaI ACNGT 1 cut(s) 662
TaiI ACGT 1 cut(s) 784
TaqI TCGA 4 cut(s) 27, 219, 261, 748
TasI AATT 6 cut(s) 248, 277, 285, 298, 583, 732
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 3 cut(s) 470, 684, 817
Tru1I TTAA 5 cut(s) 227, 386, 735, 840, 907
Tru9I TTAA 5 cut(s) 227, 386, 735, 840, 907
TscAI CASTG 3 cut(s) 574, 624, 667
TseFI GTSAC 3 cut(s) 483, 619, 708
TseI GCWGC 4 cut(s) 411, 531, 635, 827
Tsp45I GTSAC 3 cut(s) 483, 619, 708
TspDTI ATGAA 2 cut(s) 825, 870
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 3 cut(s) 574, 624, 667
Vha464I CTTAAG 1 cut(s) 226
XapI RAATTY 3 cut(s) 277, 298, 583
XceI RCATGY 2 cut(s) 747, 834
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 347
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 2 cut(s) 559, 816
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.