pycom06g09260

FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3- polyprenyl-4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin ferredoxin reductase system to COQ6

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
14478081 .. 14481766
3686 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1368 bp
ATGGTTGGCATGGCTCTTGCTTGTTCCTTGGCAAAAATGCCGTTGACAAAGCAATTGAAAGTTGCCATCATTGATAGCAATCCCGCAGTATCAAATGGGCTTAGCATCAAGAAAGAAGACCCCCCTGATCCAAGGGTCAGTACAGTAACACCTGCGACCATATCTCTCTTCAAAGGTATTGAACTCGACATATTTGTTGTTATTTATATTGGCGCTTGGAAATATGTGGAACAGAATAGACGTGCATATTTTGATCAAATGCAGGTTTGGGACTATACTGGCTTAGGATATACAAGGTACGATGCAAGAGATGTACATAAAGATTCTCTGGGGTGTGTAGTGGAGAATAAAGTACTGCACAGTTCTCTATTGTCATGTATGCAGAATACAGATTTCCAGAAGACTATCTACCCTTCCAGATTGTCCACAATGACTTTACAGCCAAGAAACTTATCCTCGGGGGTGGGAAGCACGTCATCTGGATTGAATGAGCAGGGGAACTTAGCGAAGCTTGATCTAATTGATGGCAACAGTCTATATGCAAAATTGGTGGTTGGAGCTGATGGGTCCAAGTCACGTGTTAGAGAGTTGGCAGGATTTAAGACAACTGGATGGAGTTACTCGCAGAATGCAATCATTTGTACTGTCGAACATAGTGTGGAAAACCGATGTGCATGGCAACGCTTTCTACCTGCTGGGCCAATTGCACTTTTGCCAATAGGTGATAATTTCAGCAATATTGTTTGGACTATGAAACCGAAAGAAGCAACTGACCGTAAATTAAAGGCTGAGGATGAATTTGTGAAAGATGTCAATTATGCTCTGGATTATGGATTTGGTCCACATCCTAATTCAAGCACCTCGGGAGGTGGAGGCATATTTTCTTGGTTTAAAACAAACACGAATTTATCTGCCAATGATTGCTTCAAAGTTCCACCGAAAGTGTTGAAGTTGGCGTCTGAAAGAATGGTGTTTCCATTGTCTTTGATGCATGCCAACAACTACGCGTCAAAGCATGTGGTTCTAATCGGCGATGCAGCACATACCGTTCACCCTTTGGCTGGACAAGGGGTTAATTTGGGTTTTGGAGACGCGTTTGCTCTTTCAAGAATCATTTCGGAGGGAATTGCAGTGGGAGCAGATATTGCCGAGGTATCGTTGTTGAAGAAATACGAAGCAGAGCGGAAATCAGCAAATGTCACGATGATGGCAATCCTGGACGGGTTCCAGAAGGCTTACTCCGTTGATTTCGGTCCTTTAAATGTTTTACGGGCAGCTGCATTCAATGGAGCACAGTACTTTCCACCCCTTAAGAGGAGTATTATTTCATACGCATCAGGGGATCAAAGATTGCCAATTTTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

456

Amino Acids

49.66

Weight (kDa)

8.8

Isoelectric Point (pI)

27.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 321 - 398 9.1e-13 FAD binding domain
SE PF08491 325 - 429 3.7e-08 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011500)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 160
Acc36I ACCTGC 3 cut(s) 160, 253, 700
AccBSI CCGCTC 1 cut(s) 1183
AccII CGCG 2 cut(s) 1007, 1094
AciI CCGC 2 cut(s) 84, 1183
AclWI GGATC 2 cut(s) 122, 1350
AcsI RAATTY 2 cut(s) 797, 904
AcvI CACGTG 1 cut(s) 578
AcyI GRCGYC 1 cut(s) 956
AfaI GTAC 6 cut(s) 142, 299, 315, 354, 643, 1298
AfiI CCNNNNNNNGG 2 cut(s) 1061, 1314
AflII CTTAAG 1 cut(s) 1310
AflIII ACRYGT 3 cut(s) 577, 1005, 1092
AjiI CACGTC 2 cut(s) 242, 474
AjnI CCWGG 1 cut(s) 1215
AjuI GAANNNNNNNTTGG 2 cut(s) 908, 940
AluBI AGCT 3 cut(s) 511, 560, 1277
AluI AGCT 3 cut(s) 511, 560, 1277
Alw21I GWGCWC 1 cut(s) 1294
Alw26I GTCTC 1 cut(s) 1083
AlwI GGATC 2 cut(s) 122, 1350
Ama87I CYCGRG 2 cut(s) 457, 862
AoxI GGCC 1 cut(s) 698
ApeKI GCWGC 3 cut(s) 1037, 1274, 1277
ApoI RAATTY 2 cut(s) 797, 904
Asp700I GAANNNNTTC 1 cut(s) 1114
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 4 cut(s) 567, 698, 839, 1253
AsuHPI GGTGA 2 cut(s) 734, 1043
AvaI CYCGRG 2 cut(s) 457, 862
AvaII GGWCC 3 cut(s) 567, 839, 1253
BarI GAAGNNNNNNTAC 2 cut(s) 392, 424
BbrPI CACGTG 1 cut(s) 578
BbsI GAAGAC 2 cut(s) 123, 407
Bbv12I GWGCWC 1 cut(s) 1294
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 3 cut(s) 1049, 1264, 1286
BccI CCATC 5 cut(s) 74, 518, 557, 606, 1201
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 1217
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 1083
BfoI RGCGCY 1 cut(s) 216
BfrI CTTAAG 1 cut(s) 1310
BfuAI ACCTGC 3 cut(s) 160, 253, 700
BisI GCNGC 3 cut(s) 1038, 1275, 1278
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 3 cut(s) 1039, 1276, 1279
BmcAI AGTACT 2 cut(s) 354, 1298
Bme1390I CCNGG 1 cut(s) 1217
Bme18I GGWCC 3 cut(s) 567, 839, 1253
BmeT110I CYCGRG 2 cut(s) 457, 862
BmgBI CACGTC 2 cut(s) 242, 474
BmgT120I GGNCC 4 cut(s) 567, 698, 839, 1253
BmiI GGNNCC 2 cut(s) 568, 1226
BmrFI CCNGG 1 cut(s) 1217
BmsI GCATC 5 cut(s) 114, 292, 978, 1024, 1343
BpiI GAAGAC 2 cut(s) 123, 407
Bpu10I CCTNAGC 2 cut(s) 283, 789
Bpu1102I GCTNAGC 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 578
BsaBI GATNNNNATC 2 cut(s) 78, 1211
BsaHI GRCGYC 1 cut(s) 956
BsaJI CCNNGG 5 cut(s) 27, 131, 456, 861, 1149
Bsc4I CCNNNNNNNGG 2 cut(s) 1061, 1314
Bse1I ACTGG 2 cut(s) 283, 613
Bse8I GATNNNNATC 2 cut(s) 78, 1211
BseBI CCWGG 1 cut(s) 1217
BseDI CCNNGG 5 cut(s) 27, 131, 456, 861, 1149
BseGI GGATG 3 cut(s) 617, 799, 844
BseJI GATNNNNATC 2 cut(s) 78, 1211
BseLI CCNNNNNNNGG 2 cut(s) 1061, 1314
BseMII CTCAG 1 cut(s) 780
BseNI ACTGG 2 cut(s) 283, 613
BseRI GAGGAG 1 cut(s) 1330
BseXI GCAGC 3 cut(s) 1049, 1264, 1286
BseYI CCCAGC 1 cut(s) 695
BsgI GTGCAG 1 cut(s) 341
Bsh1236I CGCG 2 cut(s) 1007, 1094
BshFI GGCC 1 cut(s) 700
BsiHKAI GWGCWC 1 cut(s) 1294
BsiHKCI CYCGRG 2 cut(s) 457, 862
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 1061, 1314
BsmAI GTCTC 1 cut(s) 1083
BsmBI CGTCTC 1 cut(s) 1083
BsmFI GGGAC 1 cut(s) 284
BsmI GAATGC 2 cut(s) 634, 1280
BsnI GGCC 1 cut(s) 700
BsoBI CYCGRG 2 cut(s) 457, 862
Bsp1286I GDGCHC 1 cut(s) 1294
Bsp1407I TGTACA 1 cut(s) 313
Bsp143I GATC 4 cut(s) 127, 253, 514, 1342
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 2 cut(s) 84, 1183
BspANI GGCC 1 cut(s) 700
BspCNI CTCAG 1 cut(s) 781
BspFNI CGCG 2 cut(s) 1007, 1094
BspLI GGNNCC 2 cut(s) 568, 1226
BspMI ACCTGC 3 cut(s) 160, 253, 700
BspPI GGATC 2 cut(s) 122, 1350
BspTI CTTAAG 1 cut(s) 1310
BsrBI CCGCTC 1 cut(s) 1183
BsrGI TGTACA 1 cut(s) 313
BsrI ACTGG 2 cut(s) 283, 613
BssECI CCNNGG 5 cut(s) 27, 131, 456, 861, 1149
BssMI GATC 4 cut(s) 127, 253, 514, 1342
BssNI GRCGYC 1 cut(s) 956
BssT1I CCWWGG 2 cut(s) 27, 131
Bst2UI CCWGG 1 cut(s) 1217
Bst4CI ACNGT 7 cut(s) 145, 362, 533, 646, 776, 1048, 1296
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 956
BstAFI CTTAAG 1 cut(s) 1310
BstAPI GCANNNNNTGC 1 cut(s) 1145
BstAUI TGTACA 1 cut(s) 313
BstBAI YACGTR 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 993
BstDEI CTNAG 5 cut(s) 101, 283, 502, 789, 1365
BstF5I GGATG 3 cut(s) 617, 799, 844
BstFNI CGCG 2 cut(s) 1007, 1094
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 4 cut(s) 130, 256, 517, 1345
BstMAI GTCTC 1 cut(s) 1083
BstMBI GATC 4 cut(s) 127, 253, 514, 1342
BstMWI GCNNNNNNNGC 2 cut(s) 1136, 1145
BstNI CCWGG 1 cut(s) 1217
BstNSI RCATGY 2 cut(s) 995, 1019
BstSCI CCNGG 1 cut(s) 1215
BstUI CGCG 2 cut(s) 1007, 1094
BstV1I GCAGC 3 cut(s) 1049, 1264, 1286
BstV2I GAAGAC 2 cut(s) 123, 407
BsuRI GGCC 1 cut(s) 700
BtgZI GCGATG 1 cut(s) 1047
BtrI CACGTC 2 cut(s) 242, 474
BtsCI GGATG 3 cut(s) 617, 799, 844
BtsI GCAGTG 1 cut(s) 1137
BtsIMutI CAGTG 1 cut(s) 1137
BveI ACCTGC 3 cut(s) 160, 253, 700
Cac8I GCNNGC 1 cut(s) 993
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 4 cut(s) 567, 698, 839, 1253
CseI GACGC 3 cut(s) 945, 996, 1100
Csp6I GTAC 6 cut(s) 141, 298, 314, 353, 642, 1297
CspCI CAANNNNNGTGG 4 cut(s) 531, 566, 999, 1034
CviAII CATG 5 cut(s) 10, 375, 675, 992, 1016
CviQI GTAC 6 cut(s) 141, 298, 314, 353, 642, 1297
DdeI CTNAG 5 cut(s) 101, 283, 502, 789, 1365
DpnI GATC 4 cut(s) 129, 255, 516, 1344
DpnII GATC 4 cut(s) 127, 253, 514, 1342
DraI TTTAAA 2 cut(s) 892, 1260
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 27, 131
Eco47I GGWCC 3 cut(s) 567, 839, 1253
Eco72I CACGTG 1 cut(s) 578
Eco88I CYCGRG 2 cut(s) 457, 862
EcoRII CCWGG 1 cut(s) 1215
EcoT14I CCWWGG 2 cut(s) 27, 131
EcoT22I ATGCAT 1 cut(s) 993
ErhI CCWWGG 2 cut(s) 27, 131
Esp3I CGTCTC 1 cut(s) 1083
FaeI CATG 5 cut(s) 13, 378, 678, 995, 1019
FaqI GGGAC 1 cut(s) 284
FatI CATG 5 cut(s) 9, 374, 674, 991, 1015
FauI CCCGC 1 cut(s) 91
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 1038, 1275, 1278
FokI GGATG 3 cut(s) 624, 806, 831
Fsp4HI GCNGC 3 cut(s) 1038, 1275, 1278
GlaI GCGC 1 cut(s) 214
GluI GCNGC 3 cut(s) 1038, 1275, 1278
GsaI CCCAGC 1 cut(s) 699
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 1 cut(s) 700
HgaI GACGC 3 cut(s) 945, 996, 1100
HhaI GCGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 956
Hin1II CATG 5 cut(s) 13, 378, 678, 995, 1019
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 2 cut(s) 323, 1110
HphI GGTGA 2 cut(s) 734, 1043
Hpy166II GTNNAC 4 cut(s) 45, 426, 842, 1051
Hpy188I TCNGA 2 cut(s) 961, 1120
Hpy188III TCNNGA 9 cut(s) 109, 397, 417, 480, 824, 864, 1107, 1201, 1228
Hpy8I GTNNAC 4 cut(s) 45, 426, 842, 1051
HpyAV CCTTC 2 cut(s) 423, 1225
HpyCH4III ACNGT 7 cut(s) 145, 362, 533, 646, 776, 1048, 1296
HpyCH4IV ACGT 3 cut(s) 241, 473, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 1136, 1145
HpyF3I CTNAG 5 cut(s) 101, 283, 502, 789, 1365
HpySE526I ACGT 3 cut(s) 241, 473, 577
Hsp92I GRCGYC 1 cut(s) 956
Hsp92II CATG 5 cut(s) 13, 378, 678, 995, 1019
HspAI GCGC 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 4 cut(s) 127, 253, 514, 1342
LmnI GCTCC 3 cut(s) 557, 1136, 1289
Lsp1109I GCAGC 3 cut(s) 1049, 1264, 1286
LweI GCATC 5 cut(s) 114, 292, 978, 1024, 1343
MaeII ACGT 3 cut(s) 241, 473, 577
MaeIII GTNAC 4 cut(s) 145, 573, 617, 1198
MalI GATC 4 cut(s) 129, 255, 516, 1344
MbiI CCGCTC 1 cut(s) 1183
MboI GATC 4 cut(s) 127, 253, 514, 1342
MboII GAAGA 4 cut(s) 128, 160, 412, 1177
MfeI CAATTG 2 cut(s) 53, 702
MhlI GDGCHC 1 cut(s) 1294
MluI ACGCGT 2 cut(s) 1005, 1092
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 8 cut(s) 466, 784, 860, 866, 871, 1114, 1144, 1308
Mph1103I ATGCAT 1 cut(s) 993
MroXI GAANNNNTTC 1 cut(s) 1114
MseI TTAA 6 cut(s) 600, 782, 891, 1074, 1259, 1311
MslI CAYNNNNRTG 1 cut(s) 1205
MspA1I CMGCKG 1 cut(s) 1277
MspCI CTTAAG 1 cut(s) 1310
MspR9I CCNGG 1 cut(s) 1217
MunI CAATTG 2 cut(s) 53, 702
Mva1269I GAATGC 2 cut(s) 634, 1280
MvaI CCWGG 1 cut(s) 1217
MvnI CGCG 2 cut(s) 1007, 1094
MwoI GCNNNNNNNGC 2 cut(s) 1136, 1145
NdeII GATC 4 cut(s) 127, 253, 514, 1342
NlaIII CATG 5 cut(s) 13, 378, 678, 995, 1019
NlaIV GGNNCC 2 cut(s) 568, 1226
NmeAIII GCCGAG 1 cut(s) 1174
NmuCI GTSAC 2 cut(s) 573, 1198
NsiI ATGCAT 1 cut(s) 993
NspI RCATGY 2 cut(s) 995, 1019
PaeI GCATGC 1 cut(s) 995
PaqCI CACCTGC 1 cut(s) 160
PctI GAATGC 2 cut(s) 634, 1280
PdmI GAANNNNTTC 1 cut(s) 1114
PfeI GAWTC 2 cut(s) 323, 1110
PfoI TCCNGGA 1 cut(s) 1215
PkrI GCNGC 3 cut(s) 1039, 1276, 1279
PmaCI CACGTG 1 cut(s) 578
PmlI CACGTG 1 cut(s) 578
Ppu21I YACGTR 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 1215
PspCI CACGTG 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 695
PspGI CCWGG 1 cut(s) 1215
PspN4I GGNNCC 2 cut(s) 568, 1226
PspPI GGNCC 4 cut(s) 567, 698, 839, 1253
PvuII CAGCTG 1 cut(s) 1277
RsaI GTAC 6 cut(s) 142, 299, 315, 354, 643, 1298
RsaNI GTAC 6 cut(s) 141, 298, 314, 353, 642, 1297
RseI CAYNNNNRTG 1 cut(s) 1205
SaqAI TTAA 6 cut(s) 600, 782, 891, 1074, 1259, 1311
SatI GCNGC 3 cut(s) 1038, 1275, 1278
Sau3AI GATC 4 cut(s) 127, 253, 514, 1342
Sau96I GGNCC 4 cut(s) 567, 698, 839, 1253
ScaI AGTACT 2 cut(s) 354, 1298
ScrFI CCNGG 1 cut(s) 1217
SduI GDGCHC 1 cut(s) 1294
SfaNI GCATC 5 cut(s) 114, 292, 978, 1024, 1343
SinI GGWCC 3 cut(s) 567, 839, 1253
SmiMI CAYNNNNRTG 1 cut(s) 1205
SmlI CTYRAG 1 cut(s) 1310
SmoI CTYRAG 1 cut(s) 1310
SphI GCATGC 1 cut(s) 995
SsiI CCGC 2 cut(s) 84, 1183
SspI AATATT 1 cut(s) 739
StyD4I CCNGG 1 cut(s) 1215
StyI CCWWGG 2 cut(s) 27, 131
TaaI ACNGT 7 cut(s) 145, 362, 533, 646, 776, 1048, 1296
TaiI ACGT 3 cut(s) 244, 476, 580
TaqI TCGA 2 cut(s) 186, 648
TaqII GACCGA 1 cut(s) 1241
TatI WGTACW 5 cut(s) 140, 313, 352, 641, 1296
TfiI GAWTC 2 cut(s) 323, 1110
Tru1I TTAA 6 cut(s) 600, 782, 891, 1074, 1259, 1311
Tru9I TTAA 6 cut(s) 600, 782, 891, 1074, 1259, 1311
TscAI CASTG 1 cut(s) 1137
TseFI GTSAC 2 cut(s) 573, 1198
TseI GCWGC 3 cut(s) 1037, 1274, 1277
Tsp45I GTSAC 2 cut(s) 573, 1198
TspDTI ATGAA 3 cut(s) 767, 810, 1317
TspGWI ACGGA 1 cut(s) 1231
TspRI CASTG 1 cut(s) 1137
Vha464I CTTAAG 1 cut(s) 1310
VpaK11BI GGWCC 3 cut(s) 567, 839, 1253
XapI RAATTY 2 cut(s) 797, 904
XceI RCATGY 2 cut(s) 995, 1019
XmnI GAANNNNTTC 1 cut(s) 1114
ZrmI AGTACT 2 cut(s) 354, 1298
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.