pycom06g09590

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014734
Physical Location & Seq
Reverse (-)
14897159 .. 14898478
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
ATGCAATCACAGGAGCAAGCAACTCCAAACAATTTTTATACTTCCTTCAACACCGGCTCACCAGGGAAATTAAATAAAATATTTATAAGAAATATATATCGAAAGATATATAGAACTCCGGGAGGCAAGATGGGAAAGATTCAGATTGCGGTGTTCCTAGCGGCAGCAATGGGCTGCTTCTTGATAGGATCAGTGAGTGCTTTCACTCACATTGTTGGAGGAAAAGAGGGCTGGTCTGTACCTGAGAACAAAACTTACTATGAGGACTGGGCTTTTCCAAGAACCTTTGGGGTTGGTGACAGACTTGTTTTCCCCTACAGGCCCGGCTCTGGCAACGTAGTAGTCATCAACAAGGACGACTTCGACAAATGCACACAGAAGAATGTCATCTACATGTATTACAATGGACCAACCATCCTCGACCTCACAGCACCAGGTGACTACTACTACTACAGTGGCGTCGGCAAGCACTGCGAGTTTGGCCAAAAGCTCCACATCAAGGTCGTCAACAAGCCTGGATCGTCTGGCAAGATTTCCCCATTCAAGCTTGTTTCCAAGAACACCAAAACTACTGCTGGCGCGCCTGCCCCCGTCACAGATGCGGCTGCTCCTGCTCATTCCTCAGCCACAACCATTCAAAATGTTGGCATGGCTTCTGGTTTATTGACCGTCTTCCTTTCTCTCTTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

231

Amino Acids

25.07

Weight (kDa)

9.52

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 78 - 162 2.4e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03930
malus_domestica MD06G1100600.v1.1 MD14G1120500.v1.1
prunus_persica Prupe.5G114200_v2.0.a1
pyrus_communis pycom06g09590
rosa_chinensis RchiOBHm_Chr7g0195571
rosa_laevigata RLG00000004108
rosa_multiflora Rmu_co8275177.1_g000001 Rmu_sc0017741.1_g000001 Rmu_ssc0000078.1_g000006
rosa_roxburghii Rroxscaffold_3G00260340
rosa_rugosa Rorug07G0024300
rosa_samantha Rh7AG152000 Rh7BG153700 Rh7CG157200 Rh7DG153000
rosa_wichuraiana Rw7G012990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AccII CGCG 1 cut(s) 581
AciI CCGC 3 cut(s) 149, 161, 602
AclWI GGATC 2 cut(s) 196, 526
AcoI YGGCCR 1 cut(s) 481
AcyI GRCGYC 1 cut(s) 459
AdeI CACNNNGTG 1 cut(s) 437
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 329, 499
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 49, 544, 638
AjnI CCWGG 3 cut(s) 61, 433, 514
AluBI AGCT 2 cut(s) 490, 547
AluI AGCT 2 cut(s) 490, 547
AlwI GGATC 2 cut(s) 196, 526
AoxI GGCC 2 cut(s) 320, 481
ApeKI GCWGC 3 cut(s) 164, 174, 605
AscI GGCGCGCC 1 cut(s) 579
AspLEI GCGC 2 cut(s) 581, 583
AspS9I GGNCC 2 cut(s) 321, 407
AsuC2I CCSGG 2 cut(s) 120, 324
AsuHPI GGTGA 3 cut(s) 51, 308, 449
AvaII GGWCC 1 cut(s) 407
BalI TGGCCA 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 664
BbvCI CCTCAGC 1 cut(s) 622
BbvI GCAGC 3 cut(s) 161, 176, 592
BccI CCATC 2 cut(s) 124, 422
BciT130I CCWGG 3 cut(s) 63, 435, 516
BcnI CCSGG 2 cut(s) 120, 324
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 2 cut(s) 316, 451
BisI GCNGC 5 cut(s) 162, 165, 175, 603, 606
BlsI GCNGC 5 cut(s) 163, 166, 176, 604, 607
Bme1390I CCNGG 5 cut(s) 63, 120, 324, 435, 516
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 2 cut(s) 321, 407
BmrFI CCNGG 5 cut(s) 63, 120, 324, 435, 516
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 589
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 664
Bpu10I CCTNAGC 1 cut(s) 622
BpuMI CCSGG 2 cut(s) 120, 324
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 499
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 3 cut(s) 63, 435, 516
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 414
BseLI CCNNNNNNNGG 2 cut(s) 329, 499
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 234, 636
BseNI ACTGG 1 cut(s) 272
BsePI GCGCGC 1 cut(s) 579
BseXI GCAGC 3 cut(s) 161, 176, 592
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 2 cut(s) 322, 483
BsiSI CCGG 3 cut(s) 54, 119, 324
BslI CCNNNNNNNGG 2 cut(s) 329, 499
BsnI GGCC 2 cut(s) 322, 483
Bsp143I GATC 2 cut(s) 188, 518
BspACI CCGC 3 cut(s) 149, 161, 602
BspANI GGCC 2 cut(s) 322, 483
BspCNI CTCAG 2 cut(s) 235, 635
BspFNI CGCG 1 cut(s) 581
BspPI GGATC 2 cut(s) 196, 526
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 62
BssHII GCGCGC 1 cut(s) 579
BssMI GATC 2 cut(s) 188, 518
BssNI GRCGYC 1 cut(s) 459
Bst2UI CCWGG 3 cut(s) 63, 435, 516
Bst4CI ACNGT 2 cut(s) 455, 670
Bst6I CTCTTC 1 cut(s) 689
BstACI GRCGYC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 471
BstC8I GCNNGC 5 cut(s) 18, 467, 577, 581, 585
BstDEI CTNAG 2 cut(s) 243, 622
BstF5I GGATG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 581
BstHHI GCGC 2 cut(s) 581, 583
BstKTI GATC 2 cut(s) 191, 521
BstMBI GATC 2 cut(s) 188, 518
BstMWI GCNNNNNNNGC 3 cut(s) 471, 480, 611
BstNI CCWGG 3 cut(s) 63, 435, 516
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 5 cut(s) 61, 118, 322, 433, 514
BstSFI CTRYAG 2 cut(s) 316, 451
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 3 cut(s) 161, 176, 592
BstV2I GAAGAC 1 cut(s) 664
BsuRI GGCC 2 cut(s) 322, 483
BtsCI GGATG 1 cut(s) 414
BtsI GCAGTG 1 cut(s) 469
BtsIMutI CAGTG 3 cut(s) 198, 460, 469
Cac8I GCNNGC 5 cut(s) 18, 467, 577, 581, 585
CfoI GCGC 2 cut(s) 581, 583
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 321, 407
CseI GACGC 1 cut(s) 448
CsiI ACCWGGT 1 cut(s) 433
Csp6I GTAC 1 cut(s) 239
CviAII CATG 2 cut(s) 394, 649
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 2 cut(s) 243, 622
DpnI GATC 2 cut(s) 190, 520
DpnII GATC 2 cut(s) 188, 518
DraIII CACNNNGTG 1 cut(s) 437
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 689
EarI CTCTTC 1 cut(s) 689
Eco47I GGWCC 1 cut(s) 407
EcoRII CCWGG 3 cut(s) 61, 433, 514
FaeI CATG 2 cut(s) 397, 652
FaiI YATR 9 cut(s) 39, 86, 95, 97, 109, 111, 261, 395, 650
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 2 cut(s) 393, 648
Fnu4HI GCNGC 5 cut(s) 162, 165, 175, 603, 606
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 5 cut(s) 162, 165, 175, 603, 606
FspBI CTAG 1 cut(s) 158
GlaI GCGC 2 cut(s) 580, 582
GluI GCNGC 5 cut(s) 162, 165, 175, 603, 606
HaeIII GGCC 2 cut(s) 322, 483
HapII CCGG 3 cut(s) 54, 119, 324
HgaI GACGC 1 cut(s) 448
HhaI GCGC 2 cut(s) 581, 583
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 2 cut(s) 397, 652
Hin6I GCGC 2 cut(s) 579, 581
HinP1I GCGC 2 cut(s) 579, 581
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 1 cut(s) 139
HpaII CCGG 3 cut(s) 54, 119, 324
HphI GGTGA 3 cut(s) 51, 308, 449
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 455, 670
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 2 cut(s) 4, 372
HpyF10VI GCNNNNNNNGC 3 cut(s) 471, 480, 611
HpyF3I CTNAG 2 cut(s) 243, 622
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 2 cut(s) 397, 652
HspAI GCGC 2 cut(s) 579, 581
Kzo9I GATC 2 cut(s) 188, 518
LmnI GCTCC 3 cut(s) 13, 495, 613
Lsp1109I GCAGC 3 cut(s) 161, 176, 592
LweI GCATC 1 cut(s) 589
MabI ACCWGGT 1 cut(s) 433
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 3 cut(s) 296, 437, 592
MalI GATC 2 cut(s) 190, 520
MboI GATC 2 cut(s) 188, 518
MboII GAAGA 3 cut(s) 391, 664, 676
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 2 cut(s) 31, 68
MluNI TGGCCA 1 cut(s) 483
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 7 cut(s) 116, 212, 220, 256, 428, 434, 631
Mox20I TGGCCA 1 cut(s) 483
MscI TGGCCA 1 cut(s) 483
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 483
MspI CCGG 3 cut(s) 54, 119, 324
MspR9I CCNGG 5 cut(s) 63, 120, 324, 435, 516
MvaI CCWGG 3 cut(s) 63, 435, 516
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 3 cut(s) 471, 480, 611
NciI CCSGG 2 cut(s) 120, 324
NdeII GATC 2 cut(s) 188, 518
NlaIII CATG 2 cut(s) 397, 652
NmuCI GTSAC 3 cut(s) 296, 437, 592
NspI RCATGY 1 cut(s) 397
PalAI GGCGCGCC 1 cut(s) 579
PauI GCGCGC 1 cut(s) 579
PciI ACATGT 1 cut(s) 393
PfeI GAWTC 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 5 cut(s) 163, 166, 176, 604, 607
PscI ACATGT 1 cut(s) 393
PsiI TTATAA 1 cut(s) 86
Psp6I CCWGG 3 cut(s) 61, 433, 514
PspGI CCWGG 3 cut(s) 61, 433, 514
PspPI GGNCC 2 cut(s) 321, 407
PsrI GAACNNNNNNTAC 2 cut(s) 239, 271
PteI GCGCGC 1 cut(s) 579
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 5 cut(s) 162, 165, 175, 603, 606
Sau3AI GATC 2 cut(s) 188, 518
Sau96I GGNCC 2 cut(s) 321, 407
ScrFI CCNGG 5 cut(s) 63, 120, 324, 435, 516
SetI ASST 8 cut(s) 244, 287, 339, 426, 439, 492, 504, 549
SexAI ACCWGGT 1 cut(s) 433
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 2 cut(s) 316, 451
SgsI GGCGCGCC 1 cut(s) 579
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 2 cut(s) 31, 68
SsiI CCGC 3 cut(s) 149, 161, 602
SspI AATATT 1 cut(s) 81
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 5 cut(s) 61, 118, 322, 433, 514
TaaI ACNGT 2 cut(s) 455, 670
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 100, 363, 420
TasI AATT 2 cut(s) 31, 68
TauI GCSGC 2 cut(s) 164, 605
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 3 cut(s) 198, 460, 476
TseFI GTSAC 3 cut(s) 296, 437, 592
TseI GCWGC 3 cut(s) 164, 174, 605
Tsp45I GTSAC 3 cut(s) 296, 437, 592
TspDTI ATGAA 1 cut(s) 676
TspRI CASTG 3 cut(s) 198, 460, 476
VpaK11BI GGWCC 1 cut(s) 407
XceI RCATGY 1 cut(s) 397
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.