pycom06g10780

riboflavin biosynthesis protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
16033635 .. 16036062
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10780.4

Sequence Viewer

Length: 1446 bp
ATGCTTCCAATGGCGGCGTTATCTTTGCCACCAGTGAGAGTCTACTGCAGCGGCGGCGGCGGCACACCCAACAGCAGTATTAGTAACAACAATTTACTCGGCAACCACGCGCTCGATGCCGCCCACATCCACCGCGCCGCCGAGCTGGCCGACGGATCCGCCGGATTCACCTCTCCCCACCCAAACTTTGGGTGCGTCATTGCCTCCAAATCCGGGAAAGTCGCCGGCGAGGGATTCCTCTACGCCCAGGGCACCAAGCCCGCCGAGGTCCTTGCCGTCGACGCAGCTGGCGACTTCTCACGCCGCGCCACTGCTTATCTCAATATGGAGCCCGGTGATTGCCACGGTGACCACTCTGCCGTCTCCGCCCTCGTTCAGGGATTGAAAGGGTGTCGAGGCTTGCAAGTTGATGTTCTTGGTGAGGACCTCAACAGTAAACTCATTGAGAGGCCTAAAAATTTGAATTTAAACAAGTCTTCTGATAGATTAGTCATTAGTATTTGTTTGGTGCTAACAGGAAAAATTGCTGCTAGCAGCGGACATGCAGCATGGATCAGCAGCAAAACGTCTAGAAATCGAGTGTTTGAACTGCGGGGTAGAAGTGATGCAGTCATTGTAGGAGGAAATACAGTGCGCAAGGACAATCCAAGACTAACTGCAAGACATGGTGGTGGACATATGCCTATGCGGATTGTAATGTCACAGACTCTTGATCTCCCAGAGGAAGCACACCTTTGGGATACCTCTGATGTATCTACTATAGTTGCAACACAAAGGGGTGCAAGAAGGCATTTCCAGAAACATCTTGCATCAAAAGGAATTGAAGTGGTGGAATTTGACATCTTAAACCCCAGAGAAGTAATGGAATACTTCCATGATCGTGGATATCTTTCACTTTTGTGGGAGTGTTGGTGTGGATTTTTGATACTTCTTCTAGAGATAAATTCTTTCTACTCATATCCTGACTCTGTATTCTCTTGTTCTTGTATCTATGTTCTACCGTTTGATTGGACTTTTTATTTTTCACTTCTGAACTTGAACCAACAGGTTGGACCTGATATGCTTATTAGTGGATTTCTTCAACCCATACCAGATGTGACCCCTGTTATTCCATCAGTTGATGAAACATTTGAAATTGATCCAACTGTGACTCCATATGAATCAAGGATTATATTCCTTTACAAAACATGGGACCCTTACGGTGCTTTCTCAAATTTTTCGCCTCACCAAATTAAGATGCCCAATGACAGTGGTGATTATGCAACTTGGTTGAGTGTCGAGCATTACTATCAGGTATTTCCTTTTGTGTATGAATCTGGTTCAATCTTACAAAACGTACCTGCTGTGGCACAAGATTGTGTTGAAAATATCAAGTCTGCCAGAAGTCCGGAAGAGGCAGCACGGATAGGAAGGTCAATGCAGAGGAAGTGTCCTGATTTGGTATAG

Protein Analysis

482

Amino Acids

52.86

Weight (kDa)

5.92

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 635
Acc36I ACCTGC 1 cut(s) 1348
AccB1I GGYRCC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 188
AccI GTMKAC 2 cut(s) 42, 279
AccII CGCG 3 cut(s) 110, 135, 306
AccIII TCCGGA 1 cut(s) 1387
AclWI GGATC 4 cut(s) 150, 163, 560, 1133
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 5 cut(s) 457, 463, 833, 943, 1213
AfaI GTAC 1 cut(s) 1338
AfiI CCNNNNNNNGG 3 cut(s) 188, 213, 376
AgsI TTSAA 9 cut(s) 385, 463, 587, 824, 1039, 1082, 1133, 1323, 1364
AjnI CCWGG 1 cut(s) 246
AleI CACNNNNGTG 1 cut(s) 898
AluBI AGCT 2 cut(s) 145, 287
AluI AGCT 2 cut(s) 145, 287
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 4 cut(s) 150, 163, 560, 1133
Aor13HI TCCGGA 1 cut(s) 1387
AoxI GGCC 2 cut(s) 147, 449
ApeKI GCWGC 7 cut(s) 48, 284, 527, 534, 545, 558, 1397
ApoI RAATTY 5 cut(s) 457, 463, 833, 943, 1213
AspLEI GCGC 4 cut(s) 112, 137, 308, 636
AspS9I GGNCC 4 cut(s) 268, 424, 1052, 1192
AsuC2I CCSGG 2 cut(s) 214, 333
AsuHPI GGTGA 6 cut(s) 160, 347, 359, 431, 1217, 1265
AsuNHI GCTAGC 1 cut(s) 530
AvaII GGWCC 4 cut(s) 268, 424, 1052, 1192
BaeGI GKGCMC 1 cut(s) 254
BamHI GGATCC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 7 cut(s) 60, 296, 514, 546, 557, 570, 1409
BccI CCATC 1 cut(s) 1120
BceAI ACGGC 2 cut(s) 260, 344
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 1 cut(s) 733
BcnI CCSGG 2 cut(s) 214, 333
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 3 cut(s) 531, 570, 935
BfmI CTRYAG 2 cut(s) 46, 759
BfuAI ACCTGC 1 cut(s) 1348
BfuI GTATCC 1 cut(s) 733
BglI GCCNNNNNGGC 1 cut(s) 146
Bme1390I CCNGG 3 cut(s) 214, 248, 333
Bme18I GGWCC 4 cut(s) 268, 424, 1052, 1192
BmgT120I GGNCC 4 cut(s) 268, 424, 1052, 1192
BmiI GGNNCC 5 cut(s) 157, 253, 330, 1193, 1194
BmrFI CCNGG 3 cut(s) 214, 248, 333
BmsI GCATC 4 cut(s) 106, 595, 818, 1227
BmtI GCTAGC 1 cut(s) 534
BpiI GAAGAC 1 cut(s) 468
BpuMI CCSGG 2 cut(s) 214, 333
BsaJI CCNNGG 4 cut(s) 246, 247, 264, 343
BsaWI WCCGGW 1 cut(s) 1387
BsaXI ACNNNNNCTCC 4 cut(s) 896, 926, 1135, 1165
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 213, 376
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 198
BseAI TCCGGA 1 cut(s) 1387
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 4 cut(s) 246, 247, 264, 343
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 3 cut(s) 188, 213, 376
BseMI GCAATG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 7 cut(s) 60, 296, 514, 546, 557, 570, 1409
Bsh1236I CGCG 3 cut(s) 110, 135, 306
BshFI GGCC 2 cut(s) 149, 451
BshNI GGYRCC 1 cut(s) 251
BsiSI CCGG 5 cut(s) 162, 213, 225, 333, 1388
BslFI GGGAC 1 cut(s) 1205
BslI CCNNNNNNNGG 3 cut(s) 188, 213, 376
BsmAI GTCTC 1 cut(s) 367
BsmBI CGTCTC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 1205
BsnI GGCC 2 cut(s) 149, 451
Bsp1286I GDGCHC 2 cut(s) 254, 333
Bsp13I TCCGGA 1 cut(s) 1387
Bsp143I GATC 5 cut(s) 155, 552, 712, 877, 1138
BspANI GGCC 2 cut(s) 149, 451
BspEI TCCGGA 1 cut(s) 1387
BspFNI CGCG 3 cut(s) 110, 135, 306
BspLI GGNNCC 5 cut(s) 157, 253, 330, 1193, 1194
BspMAI CTGCAG 1 cut(s) 50
BspMI ACCTGC 1 cut(s) 1348
BspOI GCTAGC 1 cut(s) 534
BspPI GGATC 4 cut(s) 150, 163, 560, 1133
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 4 cut(s) 246, 247, 264, 343
BssMI GATC 5 cut(s) 155, 552, 712, 877, 1138
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 7 cut(s) 347, 434, 631, 1002, 1147, 1202, 1250
Bst6I CTCTTC 1 cut(s) 1386
BstC8I GCNNGC 6 cut(s) 147, 226, 261, 289, 401, 532
BstDSI CCRYGG 1 cut(s) 343
BstEII GGTNACC 1 cut(s) 347
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 3 cut(s) 110, 135, 306
BstHHI GCGC 4 cut(s) 112, 137, 308, 636
BstKTI GATC 5 cut(s) 158, 555, 715, 880, 1141
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 5 cut(s) 155, 552, 712, 877, 1138
BstMWI GCNNNNNNNGC 7 cut(s) 54, 57, 60, 116, 146, 281, 365
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 545
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 3 cut(s) 212, 246, 331
BstSFI CTRYAG 2 cut(s) 46, 759
BstSLI GKGCMC 1 cut(s) 254
BstUI CGCG 3 cut(s) 110, 135, 306
BstV1I GCAGC 7 cut(s) 60, 296, 514, 546, 557, 570, 1409
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 155
BstXI CCANNNNNNTGG 2 cut(s) 881, 1049
BstYI RGATCY 1 cut(s) 155
BsuI GTATCC 1 cut(s) 733
BsuRI GGCC 2 cut(s) 149, 451
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 4 cut(s) 39, 309, 636, 1255
BveI ACCTGC 1 cut(s) 1348
Cac8I GCNNGC 6 cut(s) 147, 226, 261, 289, 401, 532
CfoI GCGC 4 cut(s) 112, 137, 308, 636
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 4 cut(s) 268, 424, 1052, 1192
CseI GACGC 2 cut(s) 184, 290
Csp6I GTAC 1 cut(s) 1337
CspCI CAANNNNNGTGG 2 cut(s) 1231, 1266
CviAII CATG 5 cut(s) 542, 549, 665, 875, 1188
CviJI RGCY 7 cut(s) 145, 149, 259, 287, 331, 399, 451
CviKI_1 RGCY 7 cut(s) 145, 149, 259, 287, 331, 399, 451
CviQI GTAC 1 cut(s) 1337
DpnI GATC 5 cut(s) 157, 554, 714, 879, 1140
DpnII GATC 5 cut(s) 155, 552, 712, 877, 1138
DraI TTTAAA 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 1386
EarI CTCTTC 1 cut(s) 1386
EciI GGCGGA 2 cut(s) 148, 355
Eco147I AGGCCT 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 333
Eco32I GATATC 1 cut(s) 887
Eco47I GGWCC 4 cut(s) 268, 424, 1052, 1192
Eco91I GGTNACC 1 cut(s) 347
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoO109I RGGNCCY 3 cut(s) 268, 424, 1192
EcoO65I GGTNACC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 246
EcoRV GATATC 1 cut(s) 887
EcoT38I GRGCYC 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 367
FaeI CATG 5 cut(s) 545, 552, 668, 878, 1191
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 1 cut(s) 1205
FatI CATG 5 cut(s) 541, 548, 664, 874, 1187
FauI CCCGC 2 cut(s) 268, 585
FauNDI CATATG 2 cut(s) 678, 1156
FblI GTMKAC 2 cut(s) 42, 279
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 333
FspBI CTAG 3 cut(s) 531, 570, 935
FspI TGCGCA 1 cut(s) 635
GlaI GCGC 4 cut(s) 111, 136, 307, 635
HaeIII GGCC 2 cut(s) 149, 451
HapII CCGG 5 cut(s) 162, 213, 225, 333, 1388
HgaI GACGC 2 cut(s) 184, 290
HhaI GCGC 4 cut(s) 112, 137, 308, 636
Hin1II CATG 5 cut(s) 545, 552, 668, 878, 1191
Hin6I GCGC 4 cut(s) 110, 135, 306, 634
HinP1I GCGC 4 cut(s) 110, 135, 306, 634
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 8 cut(s) 39, 165, 234, 706, 965, 1150, 1160, 1313
HpaII CCGG 5 cut(s) 162, 213, 225, 333, 1388
HphI GGTGA 6 cut(s) 160, 347, 359, 431, 1217, 1265
Hpy166II GTNNAC 4 cut(s) 43, 280, 437, 674
Hpy188I TCNGA 3 cut(s) 481, 748, 1032
Hpy188III TCNNGA 7 cut(s) 570, 710, 796, 935, 962, 1388, 1433
Hpy8I GTNNAC 4 cut(s) 43, 280, 437, 674
Hpy99I CGWCG 3 cut(s) 155, 281, 284
HpyAV CCTTC 2 cut(s) 780, 1404
HpyCH4III ACNGT 7 cut(s) 347, 434, 631, 1002, 1147, 1202, 1250
HpyCH4IV ACGT 2 cut(s) 566, 1335
HpyF10VI GCNNNNNNNGC 7 cut(s) 54, 57, 60, 116, 146, 281, 365
HpySE526I ACGT 2 cut(s) 566, 1335
Hsp92II CATG 5 cut(s) 545, 552, 668, 878, 1191
HspAI GCGC 4 cut(s) 110, 135, 306, 634
KflI GGGWCCC 1 cut(s) 1192
Kpn2I TCCGGA 1 cut(s) 1387
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 5 cut(s) 155, 552, 712, 877, 1138
LmnI GCTCC 1 cut(s) 328
Lsp1109I GCAGC 7 cut(s) 60, 296, 514, 546, 557, 570, 1409
LweI GCATC 4 cut(s) 106, 595, 818, 1227
MaeI CTAG 3 cut(s) 531, 570, 935
MaeII ACGT 2 cut(s) 566, 1335
MaeIII GTNAC 5 cut(s) 83, 347, 699, 1096, 1147
MalI GATC 5 cut(s) 157, 554, 714, 879, 1140
MboI GATC 5 cut(s) 155, 552, 712, 877, 1138
MboII GAAGA 4 cut(s) 468, 923, 1070, 1403
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 2 cut(s) 254, 333
MlyI GAGTC 4 cut(s) 48, 700, 959, 1144
MmeI TCCRAC 2 cut(s) 1030, 1166
MreI CGCCGGCG 1 cut(s) 224
MroI TCCGGA 1 cut(s) 1387
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 3 cut(s) 467, 845, 1233
MslI CAYNNNNRTG 3 cut(s) 669, 879, 898
MspA1I CMGCKG 3 cut(s) 51, 287, 537
MspI CCGG 5 cut(s) 162, 213, 225, 333, 1388
MspR9I CCNGG 3 cut(s) 214, 248, 333
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 3 cut(s) 110, 135, 306
MwoI GCNNNNNNNGC 7 cut(s) 54, 57, 60, 116, 146, 281, 365
NaeI GCCGGC 1 cut(s) 226
NciI CCSGG 2 cut(s) 214, 333
NdeI CATATG 2 cut(s) 678, 1156
NdeII GATC 5 cut(s) 155, 552, 712, 877, 1138
NgoMIV GCCGGC 1 cut(s) 224
NheI GCTAGC 1 cut(s) 530
NlaIII CATG 5 cut(s) 545, 552, 668, 878, 1191
NlaIV GGNNCC 5 cut(s) 157, 253, 330, 1193, 1194
NmeAIII GCCGAG 3 cut(s) 78, 166, 289
NmuCI GTSAC 4 cut(s) 347, 699, 1096, 1147
NsbI TGCGCA 1 cut(s) 635
NspI RCATGY 1 cut(s) 545
OliI CACNNNNGTG 1 cut(s) 898
PasI CCCWGGG 1 cut(s) 247
PceI AGGCCT 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 4 cut(s) 165, 234, 1160, 1313
PflMI CCANNNNNTGG 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 212
PleI GAGTC 4 cut(s) 47, 700, 959, 1144
PpsI GAGTC 4 cut(s) 47, 700, 959, 1144
PpuMI RGGWCCY 3 cut(s) 268, 424, 1192
Psp5II RGGWCCY 3 cut(s) 268, 424, 1192
Psp6I CCWGG 1 cut(s) 246
PspEI GGTNACC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 5 cut(s) 157, 253, 330, 1193, 1194
PspPI GGNCC 4 cut(s) 268, 424, 1052, 1192
PspPPI RGGWCCY 3 cut(s) 268, 424, 1192
PstI CTGCAG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 1338
RsaNI GTAC 1 cut(s) 1337
RseI CAYNNNNRTG 3 cut(s) 669, 879, 898
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 3 cut(s) 467, 845, 1233
Sau3AI GATC 5 cut(s) 155, 552, 712, 877, 1138
Sau96I GGNCC 4 cut(s) 268, 424, 1052, 1192
SchI GAGTC 4 cut(s) 48, 700, 959, 1144
ScrFI CCNGG 3 cut(s) 214, 248, 333
SduI GDGCHC 2 cut(s) 254, 333
SfaNI GCATC 4 cut(s) 106, 595, 818, 1227
SfcI CTRYAG 2 cut(s) 46, 759
SgrAI CRCCGGYG 1 cut(s) 224
SgrDI CGTCGACG 1 cut(s) 278
SinI GGWCC 4 cut(s) 268, 424, 1052, 1192
SmiMI CAYNNNNRTG 3 cut(s) 669, 879, 898
SseBI AGGCCT 1 cut(s) 451
SspMI CTAG 3 cut(s) 531, 570, 935
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 3 cut(s) 212, 246, 331
TaaI ACNGT 7 cut(s) 347, 434, 631, 1002, 1147, 1202, 1250
TaiI ACGT 2 cut(s) 569, 1338
TaqI TCGA 5 cut(s) 114, 279, 394, 577, 1278
TauI GCSGC 8 cut(s) 17, 54, 57, 60, 63, 122, 140, 306
TfiI GAWTC 4 cut(s) 165, 234, 1160, 1313
Tru1I TTAA 3 cut(s) 467, 845, 1233
Tru9I TTAA 3 cut(s) 467, 845, 1233
TscAI CASTG 4 cut(s) 39, 316, 636, 1255
TseFI GTSAC 4 cut(s) 347, 699, 1096, 1147
TseI GCWGC 7 cut(s) 48, 284, 527, 534, 545, 558, 1397
Tsp45I GTSAC 4 cut(s) 347, 699, 1096, 1147
TspDTI ATGAA 3 cut(s) 1137, 1173, 1326
TspGWI ACGGA 2 cut(s) 168, 1417
TspRI CASTG 4 cut(s) 39, 316, 636, 1255
Van91I CCANNNNNTGG 1 cut(s) 188
VpaK11BI GGWCC 4 cut(s) 268, 424, 1052, 1192
XagI CCTNNNNNAGG 1 cut(s) 374
XapI RAATTY 5 cut(s) 457, 463, 833, 943, 1213
XbaI TCTAGA 2 cut(s) 569, 934
XceI RCATGY 1 cut(s) 545
XcmI CCANNNNNNNNNTGG 2 cut(s) 185, 859
XmiI GTMKAC 2 cut(s) 42, 279
XspI CTAG 3 cut(s) 531, 570, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.