Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010228

Physical Location & Seq

Genomic Coordinates Reverse (-)

395158 .. 398492

Gene Structure 3335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG005500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGCGCTCAGAGTTTCTCCTTCTTCTGTACTCTGCAACTGCAACGCAACTCCTTCGCATAACAATGCCAACTCACTCTCATCCCACGCGCTCCATGCCTCCTACATCCGACGCGCCGTCGAGCTCGCCGATAAATCCGCCGGCTTCACCTCTCCCCACCCCAACTTCGGCTGCGTCATCGCCACTCCTTCCGGCAAAGTCGCCGGCGAGGGCTTCCTCTATGCCCAGGGCACCAGGCCCGCCGAGGTCCTCGCCGTCGAGGCCGCCGGACAGCTCTCCCGCCAAGCCACCGCTTATCTGAACATGGAGCCCGGCGACTGCCACGGCGACCACTCCGCCGTCTCCGCCCTCGTTCAGGGCGGGGTTGAAAGAGTGGTGATTGGGTTGAGGCATCCACTGCAGCATCTAAGAGGCAATGCCATAAGGGCATTGAGAAGTCAAGGCTTGCAAGTTGAGGTGCTCGGTGAGGACCTCAACAGCAAACTCATCGAGGAAGCTCGGAAGTCGTGCCTGCTGGCTAATGCTCCTTTAATTTGTAGAGCCGCTTCTCGAGTCCCCTTCTCTGTTCTCAAGTTTGCTATGACCCTTGATGGAAAAATTGCTGCTTCCAGTGGACATGCATCATGGATTAGCAGCAAGACATCTAGAAATCGAGTTTTTGAACTGCGGGGTACAAGTGATGCCATCATTGTAGGGGGAAACACAGCACGCAGGGACAATCCGAGGCTAACTGCGAGGCATGGAGGTGGGCATATGCCTATGCGGATTGTAATGACACAGACACTTGATCTCCCTGAGGAAGCAAACCTTTGGGATACCTCTGATGTTTCTACTATAGTCGTGACACAAAGGGGTGCGAGAAGGAGTTTCCAGAAATTTCTTGCATCTAAAGGAATTGAAGTCGTGGAGTTTGACATCTTAAACCCCAGAGAAGTAATGGAGTACTTCCATGATCGTGGATATCTTTCAATTTTGTGGGAGTGTGGAGGGACACTATCTGCAGCCGCTATTTCATCTGGAGTAATACATAAGGTCTTTGCTTTTGTTGCTCCTAAGATAATTGGTGGAAAAAATGCTCCATCCCCTGTAGGTGAACTTGGGATGGTTGAAATGACACAAGCCTTGGATTTAATTGATGTTTGCTATGAACAGGTTGGACCTGACATGCTTGTTAGTGGTTTTCTTCAACCCATACCAGATCTGACGCCTGTTATTCCATCAGTTGATGAAACATATGAAATTGATCCAACTGTCACTCCTTATGAATCAAGAATCATATTCTTTTACAAAACATGGGATCCTTATGGCGCTTTCTCAAATTTCTCTCCTCACCCAATTAAGATGCTTGATGTTGATGGTGATTATTCCACTTGGTTGAGTGTAGAGCATTACTACCAGGCTCACAAGTTTGTTGGGGTGGATGATCCTGTGGCACGAGATTGTGTTGAAAATATCAAGTCTGCAAAAAGTCCAGAAGAAGCAGCACGAATAGGACGGTCAATGCAGAGGCAGCACCCTTATTTAGTAAGATCCGACTGGGAAAGTGTCAAGATTGATGTGATGTACAGGGCACTAAAATGCAAGTTCTCAATATACCCACATTTGAATTCTATGTTGCTGTCAACTGCTGGATCTGTTCTCGTTGAAGCTTCACCGCATGATCTTTTCTGGGGTGGAGGCCGGGATGGAGAAGGCCTAAATTATTTGGGGAGGCTTTTGATGCAGTTGAGATCAGAGTTTCTTGGTGAGTCCCCTACATTAAGTGAGAGCTCATGCTTAGGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004159 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016491 GO:0016627 GO:0016628 GO:0016787 GO:0016798 GO:0016799 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

DUF1768 RibD_C dCMP_cyt_deam_1

Protein Analysis

595

Amino Acids

64.89

Weight (kDa)

6.26

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RibD_C	PF01872	187 - 390	1.8e-41	RibD C-terminal domain
NADAR	PF08719	427 - 580	2.4e-35	NADAR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47390 AT3G47390
fragaria_vesca	FvH4_6g00440 FvH4_6g00440
malus_domestica	MD04G1245400.v1.1 MD13G1061000.v1.1
prunus_persica	Prupe.6G362000_v2.0.a1
pyrus_communis	pycom04g21610 pycom06g10780 pycom12g23910
rosa_chinensis	RchiOBHm_Chr3g0447811
rosa_laevigata	RLG00000025969
rosa_multiflora	Rmu_co8480445.1_g000001 Rmu_ssc0000391.1_g000018
rosa_roxburghii	Rroxscaffold_6G00426010
rosa_rugosa	Rorug02G0605900
rosa_samantha	Rh3AG005400 Rh3BG005000 Rh3CG005300 Rh3DG005500
rosa_wichuraiana	Rw3G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	2 cut(s)	89, 114
AclWI	GGATC	6 cut(s)	1238, 1292, 1305, 1418, 1524, 1639
AcsI	RAATTY	3 cut(s)	875, 1318, 1606
AcyI	GRCGYC	1 cut(s)	1205
AfaI	GTAC	4 cut(s)	30, 673, 944, 1565
AfiI	CCNNNNNNNGG	2 cut(s)	167, 355
AgsI	TTSAA	9 cut(s)	368, 662, 899, 969, 1109, 1187, 1448, 1606, 1646
AhdI	GACNNNNNGTC	1 cut(s)	116
AjnI	CCWGG	3 cut(s)	225, 233, 1395
AluBI	AGCT	5 cut(s)	124, 274, 497, 1649, 1770
AluI	AGCT	5 cut(s)	124, 274, 497, 1649, 1770
Alw21I	GWGCWC	3 cut(s)	126, 462, 1772
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	6 cut(s)	1238, 1292, 1305, 1418, 1524, 1639
Ama87I	CYCGRG	1 cut(s)	549
AoxI	GGCC	4 cut(s)	236, 261, 1678, 1693
ApeKI	GCWGC	7 cut(s)	171, 400, 602, 633, 1001, 1481, 1510
ApoI	RAATTY	3 cut(s)	875, 1318, 1606
AspLEI	GCGC	4 cut(s)	7, 91, 116, 1310
AspS9I	GGNCC	4 cut(s)	237, 247, 469, 1157
AsuC2I	CCSGG	2 cut(s)	312, 1682
AsuHPI	GGTGA	8 cut(s)	139, 388, 476, 1103, 1322, 1370, 1644, 1757
AvaI	CYCGRG	1 cut(s)	549
AvaII	GGWCC	3 cut(s)	247, 469, 1157
AxyI	CCTNAGG	1 cut(s)	795
BaeGI	GKGCMC	2 cut(s)	233, 1573
BamHI	GGATCC	1 cut(s)	1297
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	3 cut(s)	126, 312, 1772
BarI	GAAGNNNNNNTAC	2 cut(s)	529, 561
BauI	CACGAG	1 cut(s)	1434
Bbv12I	GWGCWC	3 cut(s)	126, 462, 1772
BbvI	GCAGC	7 cut(s)	158, 412, 589, 645, 1013, 1493, 1522
BccI	CCATC	7 cut(s)	584, 692, 1087, 1096, 1225, 1349, 1679
BceAI	ACGGC	4 cut(s)	101, 239, 323, 340
BcgI	CGANNNNNNTGC	4 cut(s)	36, 70, 469, 503
BciT130I	CCWGG	3 cut(s)	227, 235, 1397
BciVI	GTATCC	1 cut(s)	808
BcnI	CCSGG	2 cut(s)	312, 1682
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	4 cut(s)	398, 834, 999, 1086
BfoI	RGCGCY	2 cut(s)	8, 1311
BfuI	GTATCC	1 cut(s)	808
BglI	GCCNNNNNGGC	2 cut(s)	260, 425
BglII	AGATCT	1 cut(s)	1198
BmcAI	AGTACT	1 cut(s)	944
Bme1390I	CCNGG	5 cut(s)	227, 235, 312, 1397, 1682
Bme18I	GGWCC	3 cut(s)	247, 469, 1157
BmeRI	GACNNNNNGTC	1 cut(s)	116
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	4 cut(s)	237, 247, 469, 1157
BmiI	GGNNCC	3 cut(s)	232, 309, 1299
BmrFI	CCNGG	5 cut(s)	227, 235, 312, 1397, 1682
BmrI	ACTGGG	1 cut(s)	1546
BmsI	GCATC	7 cut(s)	400, 412, 629, 670, 893, 1332, 1710
BmuI	ACTGGG	1 cut(s)	1546
BpmI	CTGGAG	1 cut(s)	1038
Bpu10I	CCTNAGC	1 cut(s)	1777
BpuEI	CTTGAG	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	312, 1682
BsaHI	GRCGYC	1 cut(s)	1205
BsaJI	CCNNGG	6 cut(s)	225, 226, 243, 322, 722, 1122
BsaXI	ACNNNNNCTCC	4 cut(s)	774, 804, 1240, 1270
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 355
Bse118I	RCCGGY	2 cut(s)	140, 203
Bse1I	ACTGG	2 cut(s)	609, 1541
Bse21I	CCTNAGG	1 cut(s)	795
Bse3DI	GCAATG	1 cut(s)	421
BseBI	CCWGG	3 cut(s)	227, 235, 1397
BseDI	CCNNGG	6 cut(s)	225, 226, 243, 322, 722, 1122
BseGI	GGATG	7 cut(s)	80, 105, 391, 1079, 1107, 1426, 1690
BseLI	CCNNNNNNNGG	2 cut(s)	167, 355
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	2 cut(s)	22, 786
BseNI	ACTGG	2 cut(s)	609, 1541
BseRI	GAGGAG	1 cut(s)	1317
BseSI	GKGCMC	2 cut(s)	233, 1573
BseXI	GCAGC	7 cut(s)	158, 412, 589, 645, 1013, 1493, 1522
Bsh1236I	CGCG	2 cut(s)	89, 114
BshFI	GGCC	4 cut(s)	238, 263, 1680, 1695
BshNI	GGYRCC	1 cut(s)	230
BsiHKAI	GWGCWC	3 cut(s)	126, 462, 1772
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	6 cut(s)	141, 192, 204, 267, 312, 1681
BslFI	GGGAC	4 cut(s)	539, 728, 1003, 1735
BslI	CCNNNNNNNGG	2 cut(s)	167, 355
BsmAI	GTCTC	1 cut(s)	346
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	4 cut(s)	539, 728, 1003, 1735
BsnI	GGCC	4 cut(s)	238, 263, 1680, 1695
BsoBI	CYCGRG	1 cut(s)	549
Bsp1286I	GDGCHC	6 cut(s)	126, 233, 312, 462, 1573, 1772
Bsp1407I	TGTACA	1 cut(s)	1563
BspANI	GGCC	4 cut(s)	238, 263, 1680, 1695
BspCNI	CTCAG	2 cut(s)	21, 787
BspFNI	CGCG	2 cut(s)	89, 114
BspLI	GGNNCC	3 cut(s)	232, 309, 1299
BspMAI	CTGCAG	2 cut(s)	402, 1003
BspPI	GGATC	6 cut(s)	1238, 1292, 1305, 1418, 1524, 1639
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	421
BsrFI	RCCGGY	2 cut(s)	140, 203
BsrGI	TGTACA	1 cut(s)	1563
BsrI	ACTGG	2 cut(s)	609, 1541
BssAI	RCCGGY	2 cut(s)	140, 203
BssECI	CCNNGG	6 cut(s)	225, 226, 243, 322, 722, 1122
BssNI	GRCGYC	1 cut(s)	1205
BssSI	CACGAG	1 cut(s)	1434
BssT1I	CCWWGG	1 cut(s)	1122
Bst2BI	CACGAG	1 cut(s)	1434
Bst2UI	CCWGG	3 cut(s)	227, 235, 1397
Bst4CI	ACNGT	2 cut(s)	1252, 1497
BstACI	GRCGYC	1 cut(s)	1205
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstAUI	TGTACA	1 cut(s)	1563
BstC8I	GCNNGC	8 cut(s)	126, 142, 205, 240, 446, 512, 516, 709
BstDEI	CTNAG	5 cut(s)	8, 407, 795, 1053, 1777
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	7 cut(s)	80, 105, 391, 1079, 1107, 1426, 1690
BstFNI	CGCG	2 cut(s)	89, 114
BstH2I	RGCGCY	2 cut(s)	8, 1311
BstHHI	GCGC	4 cut(s)	7, 91, 116, 1310
BstMAI	GTCTC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 260, 344, 397, 425, 1046, 1510, 1720
BstNI	CCWGG	3 cut(s)	227, 235, 1397
BstNSI	RCATGY	2 cut(s)	620, 1168
BstSCI	CCNGG	5 cut(s)	225, 233, 310, 1395, 1680
BstSFI	CTRYAG	4 cut(s)	398, 834, 999, 1086
BstSLI	GKGCMC	2 cut(s)	233, 1573
BstUI	CGCG	2 cut(s)	89, 114
BstV1I	GCAGC	7 cut(s)	158, 412, 589, 645, 1013, 1493, 1522
BstX2I	RGATCY	4 cut(s)	1198, 1297, 1529, 1631
BstXI	CCANNNNNNTGG	1 cut(s)	956
BstYI	RGATCY	4 cut(s)	1198, 1297, 1529, 1631
Bsu36I	CCTNAGG	1 cut(s)	795
BsuI	GTATCC	1 cut(s)	808
BsuRI	GGCC	4 cut(s)	238, 263, 1680, 1695
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	163
BtsCI	GGATG	7 cut(s)	80, 105, 391, 1079, 1107, 1426, 1690
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	395, 616
Cac8I	GCNNGC	8 cut(s)	126, 142, 205, 240, 446, 512, 516, 709
CfoI	GCGC	4 cut(s)	7, 91, 116, 1310
Cfr10I	RCCGGY	2 cut(s)	140, 203
Cfr13I	GGNCC	4 cut(s)	237, 247, 469, 1157
CseI	GACGC	3 cut(s)	120, 163, 1213
Csp6I	GTAC	4 cut(s)	29, 672, 943, 1564
CviQI	GTAC	4 cut(s)	29, 672, 943, 1564
DdeI	CTNAG	5 cut(s)	8, 407, 795, 1053, 1777
DriI	GACNNNNNGTC	1 cut(s)	116
Eam1105I	GACNNNNNGTC	1 cut(s)	116
EciI	GGCGGA	3 cut(s)	127, 325, 334
Ecl136II	GAGCTC	2 cut(s)	124, 1770
Eco130I	CCWWGG	1 cut(s)	1122
Eco147I	AGGCCT	1 cut(s)	1695
Eco24I	GRGCYC	3 cut(s)	126, 312, 1772
Eco32I	GATATC	1 cut(s)	962
Eco47I	GGWCC	3 cut(s)	247, 469, 1157
Eco53kI	GAGCTC	2 cut(s)	124, 1770
Eco81I	CCTNAGG	1 cut(s)	795
Eco88I	CYCGRG	1 cut(s)	549
EcoICRI	GAGCTC	2 cut(s)	124, 1770
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	247, 469
EcoRI	GAATTC	1 cut(s)	1606
EcoRII	CCWGG	3 cut(s)	225, 233, 1395
EcoRV	GATATC	1 cut(s)	962
EcoT14I	CCWWGG	1 cut(s)	1122
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	3 cut(s)	126, 312, 1772
ErhI	CCWWGG	1 cut(s)	1122
Esp3I	CGTCTC	1 cut(s)	346
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FaqI	GGGAC	4 cut(s)	539, 728, 1003, 1735
FauI	CCCGC	4 cut(s)	247, 287, 353, 660
FauNDI	CATATG	2 cut(s)	753, 1234
FokI	GGATG	7 cut(s)	67, 92, 378, 1066, 1114, 1433, 1697
FriOI	GRGCYC	3 cut(s)	126, 312, 1772
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	4 cut(s)	6, 90, 115, 1309
GsuI	CTGGAG	1 cut(s)	1038
HaeII	RGCGCY	2 cut(s)	8, 1311
HaeIII	GGCC	4 cut(s)	238, 263, 1680, 1695
HapII	CCGG	6 cut(s)	141, 192, 204, 267, 312, 1681
HgaI	GACGC	3 cut(s)	120, 163, 1213
HhaI	GCGC	4 cut(s)	7, 91, 116, 1310
Hin1I	GRCGYC	1 cut(s)	1205
Hin6I	GCGC	4 cut(s)	5, 89, 114, 1308
HinP1I	GCGC	4 cut(s)	5, 89, 114, 1308
HincII	GTYRAC	1 cut(s)	1623
HindII	GTYRAC	1 cut(s)	1623
HindIII	AAGCTT	1 cut(s)	1647
HinfI	GANTC	4 cut(s)	552, 1265, 1272, 1748
HpaII	CCGG	6 cut(s)	141, 192, 204, 267, 312, 1681
HphI	GGTGA	8 cut(s)	139, 388, 476, 1103, 1322, 1370, 1644, 1757
Hpy166II	GTNNAC	3 cut(s)	614, 1094, 1623
Hpy188I	TCNGA	9 cut(s)	11, 110, 300, 501, 723, 823, 1203, 1534, 1735
Hpy188III	TCNNGA	8 cut(s)	549, 645, 841, 871, 1017, 1269, 1472, 1549
Hpy8I	GTNNAC	3 cut(s)	614, 1094, 1623
Hpy99I	CGWCG	3 cut(s)	114, 122, 260
HpyAV	CCTTC	6 cut(s)	30, 63, 198, 568, 855, 1685
HpyCH4III	ACNGT	2 cut(s)	1252, 1497
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 260, 344, 397, 425, 1046, 1510, 1720
HpyF3I	CTNAG	5 cut(s)	8, 407, 795, 1053, 1777
Hsp92I	GRCGYC	1 cut(s)	1205
HspAI	GCGC	4 cut(s)	5, 89, 114, 1308
KroI	GCCGGC	2 cut(s)	140, 203
KroNI	GCCGGC	2 cut(s)	142, 205
LmnI	GCTCC	5 cut(s)	96, 307, 529, 1054, 1081
Lsp1109I	GCAGC	7 cut(s)	158, 412, 589, 645, 1013, 1493, 1522
LweI	GCATC	7 cut(s)	400, 412, 629, 670, 893, 1332, 1710
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	2 cut(s)	841, 1252
MboII	GAAGA	3 cut(s)	15, 1175, 1487
MflI	RGATCY	4 cut(s)	1198, 1297, 1529, 1631
MhlI	GDGCHC	6 cut(s)	126, 233, 312, 462, 1573, 1772
MlyI	GAGTC	2 cut(s)	561, 1757
MmeI	TCCRAC	4 cut(s)	133, 1135, 1271, 1557
Mph1103I	ATGCAT	1 cut(s)	622
MreI	CGCCGGCG	1 cut(s)	203
MroNI	GCCGGC	2 cut(s)	140, 203
MseI	TTAA	5 cut(s)	530, 920, 1130, 1338, 1760
MslI	CAYNNNNRTG	4 cut(s)	63, 744, 954, 1576
MspI	CCGG	6 cut(s)	141, 192, 204, 267, 312, 1681
MspR9I	CCNGG	5 cut(s)	227, 235, 312, 1397, 1682
MvaI	CCWGG	3 cut(s)	227, 235, 1397
MvnI	CGCG	2 cut(s)	89, 114
MwoI	GCNNNNNNNGC	8 cut(s)	95, 260, 344, 397, 425, 1046, 1510, 1720
NaeI	GCCGGC	2 cut(s)	142, 205
NciI	CCSGG	2 cut(s)	312, 1682
NdeI	CATATG	2 cut(s)	753, 1234
NgoMIV	GCCGGC	2 cut(s)	140, 203
NlaIV	GGNNCC	3 cut(s)	232, 309, 1299
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	841, 1252
NsiI	ATGCAT	1 cut(s)	622
NspI	RCATGY	2 cut(s)	620, 1168
PaeR7I	CTCGAG	1 cut(s)	549
PasI	CCCWGGG	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	1695
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdiI	GCCGGC	2 cut(s)	142, 205
PfeI	GAWTC	2 cut(s)	1265, 1272
PleI	GAGTC	2 cut(s)	560, 1756
PpsI	GAGTC	2 cut(s)	560, 1756
PpuMI	RGGWCCY	2 cut(s)	247, 469
Psp124BI	GAGCTC	2 cut(s)	126, 1772
Psp5II	RGGWCCY	2 cut(s)	247, 469
Psp6I	CCWGG	3 cut(s)	225, 233, 1395
PspGI	CCWGG	3 cut(s)	225, 233, 1395
PspN4I	GGNNCC	3 cut(s)	232, 309, 1299
PspPI	GGNCC	4 cut(s)	237, 247, 469, 1157
PspPPI	RGGWCCY	2 cut(s)	247, 469
PstI	CTGCAG	2 cut(s)	402, 1003
PsuI	RGATCY	4 cut(s)	1198, 1297, 1529, 1631
RsaI	GTAC	4 cut(s)	30, 673, 944, 1565
RsaNI	GTAC	4 cut(s)	29, 672, 943, 1564
RseI	CAYNNNNRTG	4 cut(s)	63, 744, 954, 1576
SacI	GAGCTC	2 cut(s)	126, 1772
SaqAI	TTAA	5 cut(s)	530, 920, 1130, 1338, 1760
Sau96I	GGNCC	4 cut(s)	237, 247, 469, 1157
ScaI	AGTACT	1 cut(s)	944
SchI	GAGTC	2 cut(s)	561, 1757
ScrFI	CCNGG	5 cut(s)	227, 235, 312, 1397, 1682
SduI	GDGCHC	6 cut(s)	126, 233, 312, 462, 1573, 1772
SfaNI	GCATC	7 cut(s)	400, 412, 629, 670, 893, 1332, 1710
SfcI	CTRYAG	4 cut(s)	398, 834, 999, 1086
Sfr274I	CTCGAG	1 cut(s)	549
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	3 cut(s)	247, 469, 1157
SlaI	CTCGAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	4 cut(s)	63, 744, 954, 1576
SmlI	CTYRAG	2 cut(s)	549, 569
SmoI	CTYRAG	2 cut(s)	549, 569
SseBI	AGGCCT	1 cut(s)	1695
SspMI	CTAG	1 cut(s)	645
SstI	GAGCTC	2 cut(s)	126, 1772
StuI	AGGCCT	1 cut(s)	1695
StyD4I	CCNGG	5 cut(s)	225, 233, 310, 1395, 1680
StyI	CCWWGG	1 cut(s)	1122
TaaI	ACNGT	2 cut(s)	1252, 1497
TaqI	TCGA	5 cut(s)	120, 258, 489, 550, 652
TatI	WGTACW	3 cut(s)	28, 942, 1563
TauI	GCSGC	3 cut(s)	266, 545, 1007
TfiI	GAWTC	2 cut(s)	1265, 1272
Tru1I	TTAA	5 cut(s)	530, 920, 1130, 1338, 1760
Tru9I	TTAA	5 cut(s)	530, 920, 1130, 1338, 1760
TscAI	CASTG	2 cut(s)	402, 616
TseFI	GTSAC	2 cut(s)	841, 1252
TseI	GCWGC	7 cut(s)	171, 400, 602, 633, 1001, 1481, 1510
Tsp45I	GTSAC	2 cut(s)	841, 1252
TspDTI	ATGAA	5 cut(s)	1002, 1161, 1242, 1251, 1278
TspRI	CASTG	2 cut(s)	402, 616
VpaK11BI	GGWCC	3 cut(s)	247, 469, 1157
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	3 cut(s)	875, 1318, 1606
XbaI	TCTAGA	1 cut(s)	644
XceI	RCATGY	2 cut(s)	620, 1168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XhoI	CTCGAG	1 cut(s)	549
XspI	CTAG	1 cut(s)	645
ZrmI	AGTACT	1 cut(s)	944
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.