Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8480445.1

Orthogroup ID

OG0010228

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2157

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8480445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 977 bp

atgcggattgtaatgacacagacacttgatctccctgaggaagcaaacctttgggacacctctgatgtttctactatagtcgtgacacaaaggggtgcgagaaggagtttccagaaatttcttgcatctaaaggaattgaagtcgtggagtttgacatcttaaaccccagagaagtaatggagtacttccatgatcgtggatatctttcaattttgtgggagtgtggagggacgctatctgcagccgctatttcatctggagtaatacataaggtctttgcttttgttgctcctaagataattggtggaaaaaatgctccatcccctgtaggtgaacttgggatggttgaaatgacacaagccttggatttaattgatgtttgctatgaacaggttggacctgacatgcttgttagtggttttcttcaacccataccagatctgacgcctgttattccatcagttgatgaaacatatgaaattgatccaactgtcactccttatgaatcaagaatcatattcttttacaaaacatgggatccttatggcgctttctcaaatttctctcctcacccaattaagatgcttgatgttgatggtgattattccacttggatgagtgtagagcattactaccaggctcacaagtttgttggggtggatgatcctgtggcacgagattgtgttgaaaatatcaagtctgcaaaaagtccggaagaagcagcacgaataggacggtcaatgcagaggcagcacccttatttagtaagatccgactgggaaagtgtcaagattgatgtgatgtacagggcactaaaatgcaagttctcaatatacccacatttgaattctatgttgctgtcaactgctggatctgttctcgttgaagcttcaccgcatgatcttttctggggtggaggccgggatggagaaggcctaaattatttggggaggcttttgatgcagttgagatcaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004159 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016491 GO:0016627 GO:0016628 GO:0016787 GO:0016798 GO:0016799 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

DUF1768 RibD_C dCMP_cyt_deam_1

Protein Analysis

325

Amino Acids

36.49

Weight (kDa)

5.06

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47390 AT3G47390
fragaria_vesca	FvH4_6g00440 FvH4_6g00440
malus_domestica	MD04G1245400.v1.1 MD13G1061000.v1.1
prunus_persica	Prupe.6G362000_v2.0.a1
pyrus_communis	pycom04g21610 pycom06g10780 pycom12g23910
rosa_chinensis	RchiOBHm_Chr3g0447811
rosa_laevigata	RLG00000025969
rosa_multiflora	Rmu_co8480445.1_g000001 Rmu_ssc0000391.1_g000018
rosa_roxburghii	Rroxscaffold_6G00426010
rosa_rugosa	Rorug02G0605900
rosa_samantha	Rh3AG005400 Rh3BG005000 Rh3CG005300 Rh3DG005500
rosa_wichuraiana	Rw3G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	3 cut(s)	4, 246, 896
AclWI	GGATC	6 cut(s)	479, 533, 546, 659, 765, 880
AcsI	RAATTY	3 cut(s)	116, 559, 847
AcyI	GRCGYC	1 cut(s)	446
AfaI	GTAC	2 cut(s)	185, 806
AgsI	TTSAA	7 cut(s)	140, 210, 350, 428, 689, 847, 887
AjnI	CCWGG	1 cut(s)	636
AluBI	AGCT	1 cut(s)	890
AluI	AGCT	1 cut(s)	890
AlwI	GGATC	6 cut(s)	479, 533, 546, 659, 765, 880
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	2 cut(s)	919, 934
ApeKI	GCWGC	3 cut(s)	242, 722, 751
ApoI	RAATTY	3 cut(s)	116, 559, 847
AspLEI	GCGC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	4 cut(s)	344, 563, 611, 885
AvaII	GGWCC	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	814
BamHI	GGATCC	1 cut(s)	538
BauI	CACGAG	1 cut(s)	675
BbvI	GCAGC	3 cut(s)	254, 734, 763
BccI	CCATC	5 cut(s)	328, 337, 466, 590, 920
BciT130I	CCWGG	1 cut(s)	638
BcnI	CCSGG	1 cut(s)	923
BfmI	CTRYAG	3 cut(s)	75, 240, 327
BfoI	RGCGCY	1 cut(s)	552
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	4 cut(s)	243, 246, 723, 752
BlsI	GCNGC	4 cut(s)	244, 247, 724, 753
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	2 cut(s)	638, 923
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	2 cut(s)	638, 923
BmrI	ACTGGG	1 cut(s)	787
BmsI	GCATC	3 cut(s)	134, 573, 951
BmuI	ACTGGG	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	923
BsaHI	GRCGYC	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	712
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 481, 511
Bse1I	ACTGG	1 cut(s)	782
Bse21I	CCTNAGG	1 cut(s)	36
BseAI	TCCGGA	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	5 cut(s)	320, 348, 621, 667, 931
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	782
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	3 cut(s)	254, 734, 763
BshFI	GGCC	2 cut(s)	921, 936
BsiSI	CCGG	2 cut(s)	713, 922
BslFI	GGGAC	2 cut(s)	68, 244
BsmFI	GGGAC	2 cut(s)	68, 244
BsnI	GGCC	2 cut(s)	921, 936
Bsp1286I	GDGCHC	1 cut(s)	814
Bsp13I	TCCGGA	1 cut(s)	712
Bsp1407I	TGTACA	1 cut(s)	804
BspACI	CCGC	3 cut(s)	4, 246, 896
BspANI	GGCC	2 cut(s)	921, 936
BspCNI	CTCAG	1 cut(s)	28
BspEI	TCCGGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	540
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	6 cut(s)	479, 533, 546, 659, 765, 880
BsrGI	TGTACA	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	782
BssECI	CCNNGG	1 cut(s)	363
BssNI	GRCGYC	1 cut(s)	446
BssSI	CACGAG	1 cut(s)	675
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	2 cut(s)	493, 738
BstACI	GRCGYC	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	804
BstDEI	CTNAG	2 cut(s)	36, 294
BstF5I	GGATG	5 cut(s)	320, 348, 621, 667, 931
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	551
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 751, 961
BstNI	CCWGG	1 cut(s)	638
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	636, 921
BstSFI	CTRYAG	3 cut(s)	75, 240, 327
BstSLI	GKGCMC	1 cut(s)	814
BstV1I	GCAGC	3 cut(s)	254, 734, 763
BstX2I	RGATCY	4 cut(s)	439, 538, 770, 872
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	4 cut(s)	439, 538, 770, 872
Bsu36I	CCTNAGG	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	921, 936
BtsCI	GGATG	5 cut(s)	320, 348, 621, 667, 931
CfoI	GCGC	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	398
CseI	GACGC	2 cut(s)	241, 454
Csp6I	GTAC	2 cut(s)	184, 805
CviAII	CATG	4 cut(s)	191, 406, 534, 899
CviJI	RGCY	7 cut(s)	245, 362, 641, 890, 921, 936, 955
CviKI_1	RGCY	7 cut(s)	245, 362, 641, 890, 921, 936, 955
CviQI	GTAC	2 cut(s)	184, 805
DdeI	CTNAG	2 cut(s)	36, 294
Eco130I	CCWWGG	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	936
Eco32I	GATATC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	847
EcoRII	CCWGG	1 cut(s)	636
EcoRV	GATATC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	4 cut(s)	194, 409, 537, 902
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	2 cut(s)	68, 244
FatI	CATG	4 cut(s)	190, 405, 533, 898
FauNDI	CATATG	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	243, 246, 723, 752
FokI	GGATG	5 cut(s)	307, 355, 628, 674, 938
Fsp4HI	GCNGC	4 cut(s)	243, 246, 723, 752
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	4 cut(s)	243, 246, 723, 752
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	921, 936
HapII	CCGG	2 cut(s)	713, 922
HgaI	GACGC	2 cut(s)	241, 454
HhaI	GCGC	1 cut(s)	551
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	194, 409, 537, 902
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HindIII	AAGCTT	1 cut(s)	888
HinfI	GANTC	2 cut(s)	506, 513
HpaII	CCGG	2 cut(s)	713, 922
HphI	GGTGA	4 cut(s)	344, 563, 611, 885
Hpy166II	GTNNAC	2 cut(s)	335, 864
Hpy188I	TCNGA	4 cut(s)	64, 444, 775, 976
Hpy188III	TCNNGA	6 cut(s)	82, 112, 258, 510, 713, 790
Hpy8I	GTNNAC	2 cut(s)	335, 864
HpyAV	CCTTC	2 cut(s)	96, 926
HpyCH4III	ACNGT	2 cut(s)	493, 738
HpyCH4V	TGCA	6 cut(s)	125, 242, 704, 745, 822, 964
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 751, 961
HpyF3I	CTNAG	2 cut(s)	36, 294
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	4 cut(s)	194, 409, 537, 902
HspAI	GCGC	1 cut(s)	549
Kpn2I	TCCGGA	1 cut(s)	712
LmnI	GCTCC	2 cut(s)	295, 322
Lsp1109I	GCAGC	3 cut(s)	254, 734, 763
LweI	GCATC	3 cut(s)	134, 573, 951
MaeIII	GTNAC	2 cut(s)	82, 493
MboII	GAAGA	2 cut(s)	416, 728
MflI	RGATCY	4 cut(s)	439, 538, 770, 872
MhlI	GDGCHC	1 cut(s)	814
MmeI	TCCRAC	3 cut(s)	376, 512, 798
MnlI	CCTC	7 cut(s)	31, 70, 221, 579, 741, 911, 945
MroI	TCCGGA	1 cut(s)	712
MseI	TTAA	3 cut(s)	161, 371, 579
MslI	CAYNNNNRTG	3 cut(s)	195, 614, 817
MspI	CCGG	2 cut(s)	713, 922
MspR9I	CCNGG	2 cut(s)	638, 923
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	3 cut(s)	287, 751, 961
NciI	CCSGG	1 cut(s)	923
NdeI	CATATG	1 cut(s)	475
NlaIII	CATG	4 cut(s)	194, 409, 537, 902
NlaIV	GGNNCC	1 cut(s)	540
NmuCI	GTSAC	2 cut(s)	82, 493
NspI	RCATGY	1 cut(s)	409
PceI	AGGCCT	1 cut(s)	936
PfeI	GAWTC	2 cut(s)	506, 513
PkrI	GCNGC	4 cut(s)	244, 247, 724, 753
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	4 cut(s)	439, 538, 770, 872
RsaI	GTAC	2 cut(s)	185, 806
RsaNI	GTAC	2 cut(s)	184, 805
RseI	CAYNNNNRTG	3 cut(s)	195, 614, 817
SaqAI	TTAA	3 cut(s)	161, 371, 579
SatI	GCNGC	4 cut(s)	243, 246, 723, 752
Sau96I	GGNCC	1 cut(s)	398
ScaI	AGTACT	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	638, 923
SduI	GDGCHC	1 cut(s)	814
SetI	ASST	7 cut(s)	51, 62, 276, 334, 396, 403, 892
SfaNI	GCATC	3 cut(s)	134, 573, 951
SfcI	CTRYAG	3 cut(s)	75, 240, 327
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	3 cut(s)	195, 614, 817
SseBI	AGGCCT	1 cut(s)	936
SsiI	CCGC	3 cut(s)	4, 246, 896
StuI	AGGCCT	1 cut(s)	936
StyD4I	CCNGG	2 cut(s)	636, 921
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	493, 738
TatI	WGTACW	2 cut(s)	183, 804
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	506, 513
Tru1I	TTAA	3 cut(s)	161, 371, 579
Tru9I	TTAA	3 cut(s)	161, 371, 579
TseFI	GTSAC	2 cut(s)	82, 493
TseI	GCWGC	3 cut(s)	242, 722, 751
Tsp45I	GTSAC	2 cut(s)	82, 493
TspDTI	ATGAA	5 cut(s)	243, 402, 483, 492, 519
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	3 cut(s)	116, 559, 847
XceI	RCATGY	1 cut(s)	409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.