Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010228

Physical Location & Seq

Genomic Coordinates Reverse (-)

72315087 .. 72316214

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0605900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCACCAAAATCTTATCTTTCTCTTTTCACAGTCACTCTCCTCCTCCTCCTCCTCGCCCTATTTTCTTTCCTCTGTAATGCAACGGCAAACTCATCTCCGTTTGAGTCCCTCGAGCATCTTAAGGGTTGTCACAAAGGTGACAAGGTCAAGGGCATCAACGACCTCAAGAAGTACCTTCAAAAGTTCGGTTACTTAAATTACGAGAACCAGAGACATTCCGATGACGATGATTTTGACGAGCGCTTGGAGGAAGCCGTCAAGACTTACCAGCTCAATTTCCACCTCAAGTCCACCGGAACATTGGACGACAAAACCCTATCAACGATGATGATGCCTCGTTGTGGTGTGCCTGATATCATCAACGGCACCACATCCATGCGATCAGCCCAGATAAAGCGCCAGCACCGTGCAATTCATTCCACTGTTCACTTCTCATTTTCCGATGGAAATCTAAAATGGCCTTCTTCAAAATACCATCTGACGTACGGTTTTCAAGCCGGCATCCCATCAGAAGCCCAGGGCGCTGTCGCACAGGCTTTCTCAACATGGGCTAAGAACACTCACTTCAAATTCAGCAAGGCTCAAAATTACCAGAGTGCTGATTTGAAGGTTAGCTTTCATAAGGGTGATCATAGAGACGGGAATTCATTTGATGGGCCTGGCGGAGAGCTGGCCCATGCTGCTTACCCTACGGAGGGAGCATTGCACTACGACGCAGATGAGACTTGGTCTGTAGGTGCCAAACCAGGTGCCATGGACATTGAGAGTGTTGGTTTGCATGAAATCGGGCACCTTCTGGGACTTGGACACAGCTCAGTGGAGGAAGCTATCATGTATCCAACCATCCCCGAGGGAGCGTATAAAAGTTTGCATGAGGACGATATTCAAGGAATAAAAGCTTTATACAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004159 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016491 GO:0016627 GO:0016628 GO:0016787 GO:0016798 GO:0016799 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 ko02024 map00740 map01100 map01110 map02024

Pfam Domains

Protein Families

DUF1768 RibD_C dCMP_cyt_deam_1

Protein Analysis

305

Amino Acids

33.82

Weight (kDa)

6.17

Isoelectric Point (pI)

24.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	53 - 110	1.2e-11	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	154 - 303	4.8e-45	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47390 AT3G47390
fragaria_vesca	FvH4_6g00440 FvH4_6g00440
malus_domestica	MD04G1245400.v1.1 MD13G1061000.v1.1
prunus_persica	Prupe.6G362000_v2.0.a1
pyrus_communis	pycom04g21610 pycom06g10780 pycom12g23910
rosa_chinensis	RchiOBHm_Chr3g0447811
rosa_laevigata	RLG00000025969
rosa_multiflora	Rmu_co8480445.1_g000001 Rmu_ssc0000391.1_g000018
rosa_roxburghii	Rroxscaffold_6G00426010
rosa_rugosa	Rorug02G0605900
rosa_samantha	Rh3AG005400 Rh3BG005000 Rh3CG005300 Rh3DG005500
rosa_wichuraiana	Rw3G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	4, 368, 740, 752, 792
AciI	CCGC	1 cut(s)	666
AclI	AACGTT	1 cut(s)	912
AcsI	RAATTY	2 cut(s)	572, 646
AfaI	GTAC	2 cut(s)	176, 488
AfeI	AGCGCT	1 cut(s)	245
AfiI	CCNNNNNNNGG	3 cut(s)	344, 697, 698
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	6 cut(s)	182, 471, 497, 571, 610, 890
AjnI	CCWGG	3 cut(s)	519, 661, 748
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	6 cut(s)	274, 618, 673, 816, 830, 902
AluI	AGCT	6 cut(s)	274, 618, 673, 816, 830, 902
Alw26I	GTCTC	3 cut(s)	208, 633, 719
Ama87I	CYCGRG	2 cut(s)	113, 851
Aor51HI	AGCGCT	1 cut(s)	245
AoxI	GGCC	3 cut(s)	461, 659, 675
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	2 cut(s)	572, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	3 cut(s)	246, 402, 527
AspS9I	GGNCC	2 cut(s)	659, 676
AsuHPI	GGTGA	2 cut(s)	152, 641
AvaI	CYCGRG	2 cut(s)	113, 851
BaeGI	GKGCMC	1 cut(s)	795
BanI	GGYRCC	5 cut(s)	4, 368, 740, 752, 792
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	5 cut(s)	440, 486, 517, 650, 854
BceAI	ACGGC	3 cut(s)	102, 242, 382
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	3 cut(s)	521, 663, 750
BciVI	GTATCC	1 cut(s)	849
BclI	TGATCA	1 cut(s)	631
BcoDI	GTCTC	3 cut(s)	208, 633, 719
BfmI	CTRYAG	1 cut(s)	735
BfoI	RGCGCY	3 cut(s)	247, 403, 528
BfrI	CTTAAG	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	849
BisI	GCNGC	1 cut(s)	684
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	3 cut(s)	521, 663, 750
BmeT110I	CYCGRG	2 cut(s)	113, 851
BmgT120I	GGNCC	2 cut(s)	659, 676
BmiI	GGNNCC	5 cut(s)	6, 370, 742, 754, 794
BmrFI	CCNGG	3 cut(s)	521, 663, 750
BmsI	GCATC	4 cut(s)	127, 165, 324, 513
BpuEI	CTTGAG	2 cut(s)	152, 272
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	4 cut(s)	519, 520, 756, 852
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 697, 698
Bse118I	RCCGGY	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	704
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	521, 663, 750
BseDI	CCNNGG	4 cut(s)	519, 520, 756, 852
BseGI	GGATG	3 cut(s)	374, 504, 846
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	344, 697, 698
BseMI	GCAATG	1 cut(s)	704
BseMII	CTCAG	1 cut(s)	831
BseRI	GAGGAG	5 cut(s)	32, 35, 38, 41, 44
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	1 cut(s)	670
BshFI	GGCC	3 cut(s)	463, 661, 677
BshNI	GGYRCC	5 cut(s)	4, 368, 740, 752, 792
BsiHKCI	CYCGRG	2 cut(s)	113, 851
BsiSI	CCGG	2 cut(s)	297, 501
BsiWI	CGTACG	1 cut(s)	486
BslFI	GGGAC	2 cut(s)	94, 816
BslI	CCNNNNNNNGG	3 cut(s)	344, 697, 698
BsmAI	GTCTC	3 cut(s)	208, 633, 719
BsmBI	CGTCTC	1 cut(s)	633
BsmFI	GGGAC	2 cut(s)	94, 816
BsnI	GGCC	3 cut(s)	463, 661, 677
BsoBI	CYCGRG	2 cut(s)	113, 851
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	2 cut(s)	383, 631
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	1 cut(s)	666
BspANI	GGCC	3 cut(s)	463, 661, 677
BspCNI	CTCAG	1 cut(s)	830
BspLI	GGNNCC	5 cut(s)	6, 370, 742, 754, 794
BspT107I	GGYRCC	5 cut(s)	4, 368, 740, 752, 792
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	704
BsrFI	RCCGGY	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	4 cut(s)	519, 520, 756, 852
BssMI	GATC	2 cut(s)	383, 631
BssT1I	CCWWGG	1 cut(s)	756
Bst2UI	CCWGG	3 cut(s)	521, 663, 750
Bst4CI	ACNGT	4 cut(s)	34, 410, 427, 491
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	404, 502, 675
BstDEI	CTNAG	2 cut(s)	555, 817
BstDSI	CCRYGG	1 cut(s)	756
BstF5I	GGATG	3 cut(s)	374, 504, 846
BstH2I	RGCGCY	3 cut(s)	247, 403, 528
BstHHI	GCGC	3 cut(s)	246, 402, 527
BstKTI	GATC	2 cut(s)	386, 634
BstMAI	GTCTC	3 cut(s)	208, 633, 719
BstMBI	GATC	2 cut(s)	383, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	524, 683
BstNI	CCWGG	3 cut(s)	521, 663, 750
BstSCI	CCNGG	3 cut(s)	519, 661, 748
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	795
BstV1I	GCAGC	1 cut(s)	670
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	3 cut(s)	463, 661, 677
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	3 cut(s)	374, 504, 846
BtsIMutI	CAGTG	2 cut(s)	423, 825
Cac8I	GCNNGC	3 cut(s)	404, 502, 675
CfoI	GCGC	3 cut(s)	246, 402, 527
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	2 cut(s)	659, 676
CseI	GACGC	1 cut(s)	725
CsiI	ACCWGGT	1 cut(s)	748
Csp6I	GTAC	2 cut(s)	175, 487
CviAII	CATG	7 cut(s)	379, 549, 680, 757, 782, 835, 875
CviQI	GTAC	2 cut(s)	175, 487
DdeI	CTNAG	2 cut(s)	555, 817
DpnI	GATC	2 cut(s)	385, 633
DpnII	GATC	2 cut(s)	383, 631
EciI	GGCGGA	1 cut(s)	681
Eco130I	CCWWGG	1 cut(s)	756
Eco32I	GATATC	1 cut(s)	358
Eco47III	AGCGCT	1 cut(s)	245
Eco88I	CYCGRG	2 cut(s)	113, 851
EcoRI	GAATTC	1 cut(s)	646
EcoRII	CCWGG	3 cut(s)	519, 661, 748
EcoRV	GATATC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	756
Esp3I	CGTCTC	1 cut(s)	633
FaeI	CATG	7 cut(s)	382, 552, 683, 760, 785, 838, 878
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FaqI	GGGAC	2 cut(s)	94, 816
FatI	CATG	7 cut(s)	378, 548, 679, 756, 781, 834, 874
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	3 cut(s)	361, 491, 833
Fsp4HI	GCNGC	1 cut(s)	684
GlaI	GCGC	3 cut(s)	245, 401, 526
GluI	GCNGC	1 cut(s)	684
HaeII	RGCGCY	3 cut(s)	247, 403, 528
HaeIII	GGCC	3 cut(s)	463, 661, 677
HapII	CCGG	2 cut(s)	297, 501
HgaI	GACGC	1 cut(s)	725
HhaI	GCGC	3 cut(s)	246, 402, 527
Hin1II	CATG	7 cut(s)	382, 552, 683, 760, 785, 838, 878
Hin6I	GCGC	3 cut(s)	244, 400, 525
HinP1I	GCGC	3 cut(s)	244, 400, 525
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	2 cut(s)	297, 501
HphI	GGTGA	2 cut(s)	152, 641
Hpy166II	GTNNAC	2 cut(s)	294, 430
Hpy188I	TCNGA	4 cut(s)	223, 445, 483, 514
Hpy188III	TCNNGA	2 cut(s)	169, 262
Hpy8I	GTNNAC	2 cut(s)	294, 430
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	4 cut(s)	188, 474, 604, 806
HpyCH4III	ACNGT	4 cut(s)	34, 410, 427, 491
HpyCH4IV	ACGT	2 cut(s)	485, 912
HpyCH4V	TGCA	5 cut(s)	83, 413, 709, 781, 874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	524, 683
HpyF3I	CTNAG	2 cut(s)	555, 817
HpySE526I	ACGT	2 cut(s)	485, 912
Hsp92II	CATG	7 cut(s)	382, 552, 683, 760, 785, 838, 878
HspAI	GCGC	3 cut(s)	244, 400, 525
KroI	GCCGGC	1 cut(s)	500
KroNI	GCCGGC	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	383, 631
LmnI	GCTCC	2 cut(s)	701, 857
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	4 cut(s)	127, 165, 324, 513
MabI	ACCWGGT	1 cut(s)	748
MaeII	ACGT	2 cut(s)	485, 912
MaeIII	GTNAC	4 cut(s)	34, 131, 140, 191
MalI	GATC	2 cut(s)	385, 633
MboI	GATC	2 cut(s)	383, 631
MboII	GAAGA	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	795
MluCI	AATT	6 cut(s)	199, 277, 414, 572, 589, 646
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	866
MroNI	GCCGGC	1 cut(s)	500
MseI	TTAA	2 cut(s)	123, 197
MslI	CAYNNNNRTG	4 cut(s)	138, 222, 377, 627
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	2 cut(s)	297, 501
MspR9I	CCNGG	3 cut(s)	521, 663, 750
MvaI	CCWGG	3 cut(s)	521, 663, 750
MwoI	GCNNNNNNNGC	2 cut(s)	524, 683
NaeI	GCCGGC	1 cut(s)	502
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	2 cut(s)	383, 631
NgoMIV	GCCGGC	1 cut(s)	500
NlaIII	CATG	7 cut(s)	382, 552, 683, 760, 785, 838, 878
NlaIV	GGNNCC	5 cut(s)	6, 370, 742, 754, 794
NmuCI	GTSAC	3 cut(s)	34, 131, 140
OliI	CACNNNNGTG	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	113
PasI	CCCWGGG	1 cut(s)	520
PdiI	GCCGGC	1 cut(s)	502
Pfl23II	CGTACG	1 cut(s)	486
PflFI	GACNNNGTC	2 cut(s)	146, 730
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp1406I	AACGTT	1 cut(s)	912
Psp6I	CCWGG	3 cut(s)	519, 661, 748
PspGI	CCWGG	3 cut(s)	519, 661, 748
PspLI	CGTACG	1 cut(s)	486
PspN4I	GGNNCC	5 cut(s)	6, 370, 742, 754, 794
PspPI	GGNCC	2 cut(s)	659, 676
PspXI	VCTCGAGB	1 cut(s)	113
PsyI	GACNNNGTC	2 cut(s)	146, 730
RsaI	GTAC	2 cut(s)	176, 488
RsaNI	GTAC	2 cut(s)	175, 487
RseI	CAYNNNNRTG	4 cut(s)	138, 222, 377, 627
SaqAI	TTAA	2 cut(s)	123, 197
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	2 cut(s)	383, 631
Sau96I	GGNCC	2 cut(s)	659, 676
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	521, 663, 750
SduI	GDGCHC	1 cut(s)	795
SexAI	ACCWGGT	1 cut(s)	748
SfaNI	GCATC	4 cut(s)	127, 165, 324, 513
SfcI	CTRYAG	1 cut(s)	735
Sfr274I	CTCGAG	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	113
SmiMI	CAYNNNNRTG	4 cut(s)	138, 222, 377, 627
SmlI	CTYRAG	4 cut(s)	113, 122, 167, 287
SmoI	CTYRAG	4 cut(s)	113, 122, 167, 287
Sse9I	AATT	6 cut(s)	199, 277, 414, 572, 589, 646
SsiI	CCGC	1 cut(s)	666
StyD4I	CCNGG	3 cut(s)	519, 661, 748
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	4 cut(s)	34, 410, 427, 491
TaiI	ACGT	2 cut(s)	488, 915
TaqI	TCGA	1 cut(s)	114
TasI	AATT	6 cut(s)	199, 277, 414, 572, 589, 646
Tru1I	TTAA	2 cut(s)	123, 197
Tru9I	TTAA	2 cut(s)	123, 197
TscAI	CASTG	2 cut(s)	430, 825
TseFI	GTSAC	3 cut(s)	34, 131, 140
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	3 cut(s)	34, 131, 140
TspDTI	ATGAA	4 cut(s)	407, 611, 639, 798
TspGWI	ACGGA	2 cut(s)	90, 710
TspRI	CASTG	2 cut(s)	430, 825
Tth111I	GACNNNGTC	2 cut(s)	146, 730
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	2 cut(s)	572, 646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.