pycom06g11290

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013452
Physical Location & Seq
Forward (+)
16617657 .. 16622524
4868 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3393 bp
ATGAAGGGTCGGTCGCACCGGCTTCAGAGTTCGGACCCGCCGGATGACTGGGTTAACGGGTCGTGGACCGTGGACTGCCTGTGCGGTGTCAATTTTGACGATGGGGAAGAGATGGTCAATTGCGACGAGTGTAGCGTTTGGGTGCACACCCGGTGCTCTAGGTATGTGAAGGGAGATGATAATTTTGTTTGTGATAAGTGTAAGAGTAAGAACAATAGGAATGATAGTGAGGAAACCGAGGTTGCGCAGTTGTTGGTTGAGCTTCCGACGAAGACTGTGAGGATGGAGAGCTCTTATGCACATCCGCCTAATGTGCCTACCAGGCGGCCTTTCCGGCTTTGGACTGATATACCGATGGAGGAGAGGGTGCATGTTCAGGGAATCCCGGGCGGGGACCCTGCTCTATTTGGTGGGTTGTCATCGGTTTTTACTCCGGAGCTGTGGAAGTCTACTGGGTATGTCCCCAAAAAGTTTAATTTTCAGTATAGGGAGTTCCCTTGTTGGGACGAGAAGAAGGAGGATGATGCTAAATTTGACGAGGAAAATGAGAATCCGGTTGATAGAGGTGCTGGCGTTCTGTTCTCCTTGTTGAAGGAGAGTATGTTGGCAAACCCAGTAGCTTCTTTGGTGGGGACGAGGGGCCGAACAGAGGATGGGGGGTATAACAAGAATGCATCTTTGAAAGAGAGGAAAAGGTGGGATAATGAAGCTGTTGATCTTAGGTGTGCTCAGAGTGGTGTGAAGAAGGAGAGAAGTCTACTTCGGCCTGTTGTGTTACATTCGGGCAAGCGGAAAAAGGATGATTTGGGGACATCCAAAGATCGGAGTGGCAAGAAGAAGGCTAGAGCCGCTGAGAAAGAGGCTGATGCAAAGAAGAGAGGTGCACAATCTTCTAAATCAGTGTTTACACCCACGAGTGATGCAAAACAATTGGAATTTTCTGAGGACAGAGGTCCGAAGATTTCCAAGGGTGACATTCAGAGTAAGAATAGCAAGAAGTTTAGCGATTCCATGGTCAGCGAACCTGCATCAGATGGTTGTCTTCCAGTAGACTCTACTGTTGAAAAACACTTGTCAGAAACCTTAATTTCTGACACGCGTAAACAGAAAATTTCAATTGGTGATGGACTGAAGGAAGACAAGGTCGGCCACCAAGTTCCTGTAGTGCCGGAGAATCTCACTCTCACCAAAACTATTGATGCTGTTGCTTCATTGTTAGAGCACAATGATGGTGCAGCTGATTGTGAAAAGAAAGAGGGAGATAGGACAGCAGATGACACGTTGGATGTGCAACCTCTGATTGGAGATGTCGCTGCTTCAGAAGTTAAGAATCAGATTCAATATTCTACTGGTGGGATCTCTGTAGAACCTCATTCTAAATTGAAAACAGAAGAACATAATGAGAATTGTAGTAGCTCATTGAAAGTTCAGCATTCTCCTCATGCTGATGCAAAAGATCTCAGCGTATCTTCTGATCACATGTCTGAAAGTCTGAGAATCAATGAGGTACTAGTAAACAGCCCACTATCTAGTGACCATAAGGTGCTTGGTGCTGACAGAAATTCAGAAGCGGCTAGTGATTCTCGTAAAGACAAGGGCGATGAGTTATCTGGTGATCCTTGTCAACTTAAACAGGAATTGGAAGGTTCTGAGGGTTCCATGGCTCTGCAACAAAGTCCGGCAGATCCCAAACACAGTTTGGGGTCTCCTGAAGAGCTTTCAAAACCAGATGGAATTATGTTAAACTCTCCAGCCATACCCAGTCAGTGTAAAACAATAGCATGTGCTGGAAAATCTTCTGCCATTTCATCCACCGTTGCAGTGTCCATATCATCCACTTCTGATAACTTAAAATCTGGTGATGCTCAGAATCCTCATCCAATTTCGAAGCAACGAGTAATATCTGAAAGTAATGTTAGCATTAAGAAGGATCGTGCTTCATGTGACAACTTGGACGAAGACAGGGACAATATGTCAAGGAAAACAGTAAAAGAGCATATCAGATCCTCTACAAATTCTACTCTGAAAACCTCACACTTGAGCAGGAATCATGATTCCAAGGGGGCCACATCAGAATCAAAAGATTCAGTGCATCACTCATCTTCCAAGACATCTCCAGCAGGGAATACTGCTGTTCCTTCAGGATCTAGTGAGCCTGCTGGATCACTGCCCAGCCAGAAGGCTTTACATGTACAAAATAAGAGTTCAGCTTCTAGTGCATTGCAAAGAGGTGAAAAGTTCAACCATACAACTTCATCTAAGACTACTCAGAATCACACACCATCTGCTTTTCCCCCTGCACCACCAAGTGTGCAGGCACAATTAAGTGACCAGGAGATAGCTATGCTTTTGCATCAAGAGCTCAACAGTTCTCCGAGAGTACCTCGTGTACCACGTGTTCGCAATGCGTCTAGCTTACCTCAATTGACTTCTCCAAGTGCAACAAGCACGTTAATGAAGCGTACATCTAATTCTGGAGGAAAGGATCACAGTTCGGTCTTTAGAAGAAAAATCAGGGATGCACCTAAAGATGGGTCCCGAAGTTCACGTGAACATGATGAAGAAGCTAAAAGGACGGGCAGAATATCATCTTCTCCAGATCGAAGACGACAAGATGCATCAGATGTTGCTAGTAAGAGGGAGGACAATGGATCTTCGGCAGCGGTACTCTCTGGCAGGAAGAATATTCATTCTTCCTCCACTCATACTGCAAACAGTGGACCATCTTCGTCCAATGAGGCTAATGATCGCAATGTGTCATCTGTACGCAGTTCGCCTAGGAATGTCTCTGATGATGATACAGGCTCAGTTGGTCCGATTCATCGTACATTACCAGCCTTGATAAATGAGATTATGAGTAAAGGCAGACGCATGACATATGAGGAGCTTTGTAATGCTGTGATGCCGCACTGGCATAACCTGAGAAAGCATAATGGAGAGCGTTATGCATACACAAGTCCTTCACAGGCTGTTCTTGATTGCCTTCGAAATCGACATGAATGGGCTCGGTTAGTTGATCGTGGTCCTAAGACAAATTCTAGTAGGAAAAGGCGAAAAGCAGATGCTGAAGATTCAGATGATAATGAATATGGCAAGGGAAAAAATCCAAAGGAGTTGGATGGTAAAAGCATTGAGACACAGAGAGAGGACTACCCCAAGGGCAAGAGAAAAGCTCGAAAACGTAGGAGATTGGCTCTTCAGGGAAAAGGAATAAAGGATGTCAGGGAGAAGCGGAAGGCAGATATGCTTACCGACGATGATGTTGGACAGTCATTTTCTAATTCCACCGAGGGAAGCATGTCCACTGAGGATGATATTCAGGGAGGCGGAGCATGCCCGGTAAGAGGAAGTGAGGCCTCTACTAGTTCGGATGATGAGACCGGGGCAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

1131

Amino Acids

123.41

Weight (kDa)

7.95

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7648 PF24659 943 - 1005 2.4e-33 Domain of unknown function (DUF7648)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013452)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32810
fragaria_vesca FvH4_5g10620
malus_domestica MD06G1121800.v1.1
prunus_persica Prupe.5G132500_v2.0.a1 Prupe.5G132500_v2.0.a1 Prupe.5G132500_v2.0.a1
pyrus_communis pycom06g11290
rosa_chinensis RchiOBHm_Chr7g0187521
rosa_laevigata RLG00000004774
rosa_multiflora Rmu_sc0019127.1_g000003
rosa_roxburghii Rroxscaffold_3G00267360
rosa_rugosa Rorug06G0482200 Rorug06G0482300 Rorug06G0482400
rosa_samantha Rh7AG087000 Rh7BG088400 Rh7CG087700 Rh7DG089300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 246
Acc36I ACCTGC 1 cut(s) 1033
AccI GTMKAC 3 cut(s) 449, 757, 1050
AccII CGCG 1 cut(s) 1099
AccIII TCCGGA 1 cut(s) 433
AclWI GGATC 9 cut(s) 1364, 1610, 1679, 1938, 1998, 2152, 2170, 2493, 2659
AcoI YGGCCR 1 cut(s) 1147
AcsI RAATTY 6 cut(s) 530, 935, 1110, 1561, 2014, 3034
AcuI CTGAAG 7 cut(s) 8, 1151, 1302, 1731, 2124, 3087, 3182
AcvI CACGTG 2 cut(s) 2396, 2549
AdeI CACNNNGTG 2 cut(s) 153, 2309
AfaI GTAC 8 cut(s) 1509, 2193, 2382, 2391, 2464, 2667, 2766, 2827
AfiI CCNNNNNNNGG 7 cut(s) 391, 502, 649, 822, 1301, 2531, 3344
AflIII ACRYGT 5 cut(s) 1097, 1278, 1479, 2188, 2395
AgsI TTSAA 9 cut(s) 592, 682, 1064, 1116, 1340, 1384, 1423, 1722, 2242
AhdI GACNNNNNGTC 1 cut(s) 1972
AhlI ACTAGT 2 cut(s) 1510, 3362
AjnI CCWGG 2 cut(s) 320, 2331
Alw21I GWGCWC 7 cut(s) 147, 158, 293, 730, 886, 1224, 2364
Alw26I GTCTC 4 cut(s) 1710, 2791, 3128, 3371
Alw44I GTGCAC 2 cut(s) 143, 882
AlwI GGATC 9 cut(s) 1364, 1610, 1679, 1938, 1998, 2152, 2170, 2493, 2659
AlwNI CAGNNNCTG 1 cut(s) 3065
Ama87I CYCGRG 1 cut(s) 385
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 6 cut(s) 326, 640, 764, 1147, 2064, 3354
ApaLI GTGCAC 2 cut(s) 143, 882
ApeKI GCWGC 3 cut(s) 1235, 1313, 2660
ApoI RAATTY 6 cut(s) 530, 935, 1110, 1561, 2014, 3034
Asp700I GAANNNNTTC 1 cut(s) 1795
AspA2I CCTAGG 1 cut(s) 2777
AspLEI GCGC 1 cut(s) 247
AsuC2I CCSGG 5 cut(s) 151, 386, 387, 3338, 3382
AsuHPI GGTGA 6 cut(s) 983, 1133, 1177, 1625, 1871, 2243
AsuII TTCGAA 2 cut(s) 1886, 2986
AvaI CYCGRG 1 cut(s) 385
AvaII GGWCC 8 cut(s) 34, 66, 394, 953, 2535, 2720, 2813, 3023
AvrII CCTAGG 1 cut(s) 2777
BaeGI GKGCMC 2 cut(s) 147, 886
BanII GRGCYC 3 cut(s) 293, 2364, 3007
BauI CACGAG 2 cut(s) 913, 2385
BbrPI CACGTG 2 cut(s) 2396, 2549
BbsI GAAGAC 5 cut(s) 278, 1034, 1143, 1965, 2611
Bbv12I GWGCWC 7 cut(s) 147, 158, 293, 730, 886, 1224, 2364
BbvI GCAGC 3 cut(s) 1247, 1300, 2672
BciT130I CCWGG 2 cut(s) 322, 2333
BclI TGATCA 1 cut(s) 1474
BcnI CCSGG 5 cut(s) 151, 386, 387, 3338, 3382
BcoDI GTCTC 4 cut(s) 1710, 2791, 3128, 3371
BcuI ACTAGT 2 cut(s) 1510, 3362
BfmI CTRYAG 2 cut(s) 1161, 1362
BfuAI ACCTGC 1 cut(s) 1033
BglI GCCNNNNNGGC 3 cut(s) 322, 334, 2911
BglII AGATCT 1 cut(s) 1456
BisI GCNGC 7 cut(s) 326, 849, 1236, 1314, 1572, 2661, 2906
BlnI CCTAGG 1 cut(s) 2777
BlsI GCNGC 7 cut(s) 327, 850, 1237, 1315, 1573, 2662, 2907
Bme1390I CCNGG 7 cut(s) 151, 322, 386, 387, 2333, 3338, 3382
Bme18I GGWCC 8 cut(s) 34, 66, 394, 953, 2535, 2720, 2813, 3023
BmeRI GACNNNNNGTC 1 cut(s) 1972
BmeT110I CYCGRG 1 cut(s) 385
BmiI GGNNCC 8 cut(s) 36, 395, 396, 641, 1657, 2065, 2536, 2537
BmrFI CCNGG 7 cut(s) 151, 322, 386, 387, 2333, 3338, 3382
BmrI ACTGGG 4 cut(s) 58, 462, 608, 1755
BmuI ACTGGG 4 cut(s) 58, 462, 608, 1755
BoxI GACNNNNGTC 1 cut(s) 951
BpiI GAAGAC 5 cut(s) 278, 1034, 1143, 1965, 2611
BplI GAGNNNNNCTC 6 cut(s) 2368, 2400, 3157, 3189, 3178, 3210
BpmI CTGGAG 4 cut(s) 1734, 2100, 2496, 2580
Bpu14I TTCGAA 2 cut(s) 1886, 2986
BpuEI CTTGAG 1 cut(s) 2059
BpuMI CCSGG 5 cut(s) 151, 386, 387, 3338, 3382
BsaAI YACGTR 2 cut(s) 2396, 2549
BsaI GGTCTC 2 cut(s) 1710, 3371
BsaWI WCCGGW 2 cut(s) 433, 553
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 7 cut(s) 391, 502, 649, 822, 1301, 2531, 3344
Bse118I RCCGGY 1 cut(s) 18
Bse1I ACTGG 7 cut(s) 53, 457, 614, 1046, 1354, 1761, 2915
Bse3DI GCAATG 3 cut(s) 2219, 2410, 2758
BseAI TCCGGA 1 cut(s) 433
BseBI CCWGG 2 cut(s) 322, 2333
BseLI CCNNNNNNNGG 7 cut(s) 391, 502, 649, 822, 1301, 2531, 3344
BseMI GCAATG 3 cut(s) 2219, 2410, 2758
BseNI ACTGG 7 cut(s) 53, 457, 614, 1046, 1354, 1761, 2915
BseRI GAGGAG 3 cut(s) 374, 1428, 2897
BseSI GKGCMC 2 cut(s) 147, 886
BseXI GCAGC 3 cut(s) 1247, 1300, 2672
BseYI CCCAGC 1 cut(s) 2171
BsgI GTGCAG 3 cut(s) 1254, 2283, 2333
Bsh1236I CGCG 1 cut(s) 1099
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 6 cut(s) 328, 642, 766, 1149, 2066, 3356
BsiEI CGRYCG 1 cut(s) 14
BsiHKAI GWGCWC 7 cut(s) 147, 158, 293, 730, 886, 1224, 2364
BsiHKCI CYCGRG 1 cut(s) 385
BslFI GGGAC 7 cut(s) 407, 446, 518, 646, 823, 1979, 2521
BslI CCNNNNNNNGG 7 cut(s) 391, 502, 649, 822, 1301, 2531, 3344
BsmAI GTCTC 4 cut(s) 1710, 2791, 3128, 3371
BsmFI GGGAC 7 cut(s) 407, 446, 518, 646, 823, 1979, 2521
BsmI GAATGC 2 cut(s) 676, 1432
BsnI GGCC 6 cut(s) 328, 642, 766, 1149, 2066, 3356
Bso31I GGTCTC 2 cut(s) 1710, 3371
BsoBI CYCGRG 1 cut(s) 385
Bsp119I TTCGAA 2 cut(s) 1886, 2986
Bsp1286I GDGCHC 8 cut(s) 147, 158, 293, 730, 886, 1224, 2364, 3007
Bsp13I TCCGGA 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 2191
Bsp19I CCATGG 2 cut(s) 1011, 1659
BspANI GGCC 6 cut(s) 328, 642, 766, 1149, 2066, 3356
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 1 cut(s) 1099
BspHI TCATGA 1 cut(s) 2050
BspLI GGNNCC 8 cut(s) 36, 395, 396, 641, 1657, 2065, 2536, 2537
BspMI ACCTGC 1 cut(s) 1033
BspPI GGATC 9 cut(s) 1364, 1610, 1679, 1938, 1998, 2152, 2170, 2493, 2659
BspQI GCTCTTC 2 cut(s) 1707, 3201
BspT104I TTCGAA 2 cut(s) 1886, 2986
BspTNI GGTCTC 2 cut(s) 1710, 3371
BsrDI GCAATG 3 cut(s) 2219, 2410, 2758
BsrFI RCCGGY 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 2191
BsrI ACTGG 7 cut(s) 53, 457, 614, 1046, 1354, 1761, 2915
BssAI RCCGGY 1 cut(s) 18
BssSI CACGAG 2 cut(s) 913, 2385
BssT1I CCWWGG 6 cut(s) 966, 1011, 1659, 2058, 2777, 3156
Bst2BI CACGAG 2 cut(s) 913, 2385
Bst2UI CCWGG 2 cut(s) 322, 2333
Bst6I CTCTTC 4 cut(s) 102, 869, 1707, 3201
BstAUI TGTACA 1 cut(s) 2191
BstBAI YACGTR 2 cut(s) 2396, 2549
BstBI TTCGAA 2 cut(s) 1886, 2986
BstC8I GCNNGC 5 cut(s) 571, 788, 2157, 2316, 3334
BstDSI CCRYGG 3 cut(s) 69, 1011, 1659
BstFNI CGCG 1 cut(s) 1099
BstHHI GCGC 1 cut(s) 247
BstMAI GTCTC 4 cut(s) 1710, 2791, 3128, 3371
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 8 cut(s) 313, 322, 334, 848, 2216, 2359, 2911, 3333
BstNI CCWGG 2 cut(s) 322, 2333
BstNSI RCATGY 6 cut(s) 374, 1483, 1785, 2192, 3301, 3336
BstPAI GACNNNNGTC 1 cut(s) 951
BstSCI CCNGG 7 cut(s) 149, 320, 384, 385, 2331, 3336, 3380
BstSFI CTRYAG 2 cut(s) 1161, 1362
BstSLI GKGCMC 2 cut(s) 147, 886
BstUI CGCG 1 cut(s) 1099
BstV1I GCAGC 3 cut(s) 1247, 1300, 2672
BstV2I GAAGAC 5 cut(s) 278, 1034, 1143, 1965, 2611
BstX2I RGATCY 6 cut(s) 1356, 1456, 1684, 2003, 2144, 2651
BstYI RGATCY 6 cut(s) 1356, 1456, 1684, 2003, 2144, 2651
BsuRI GGCC 6 cut(s) 328, 642, 766, 1149, 2066, 3356
BtgI CCRYGG 3 cut(s) 69, 1011, 1659
BtgZI GCGATG 1 cut(s) 1614
BtsI GCAGTG 2 cut(s) 1827, 2165
BtsIMutI CAGTG 8 cut(s) 906, 1772, 1827, 2094, 2165, 2722, 2908, 3303
BveI ACCTGC 1 cut(s) 1033
Cac8I GCNNGC 5 cut(s) 571, 788, 2157, 2316, 3334
CaiI CAGNNNCTG 1 cut(s) 3065
CciI TCATGA 1 cut(s) 2050
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 18
Cfr9I CCCGGG 1 cut(s) 385
CseI GACGC 2 cut(s) 2397, 2877
Csp6I GTAC 8 cut(s) 1508, 2192, 2381, 2390, 2463, 2666, 2765, 2826
CviQI GTAC 8 cut(s) 1508, 2192, 2381, 2390, 2463, 2666, 2765, 2826
DraIII CACNNNGTG 2 cut(s) 153, 2309
DriI GACNNNNNGTC 1 cut(s) 1972
EaeI YGGCCR 1 cut(s) 1147
Eam1104I CTCTTC 4 cut(s) 102, 869, 1707, 3201
Eam1105I GACNNNNNGTC 1 cut(s) 1972
EarI CTCTTC 4 cut(s) 102, 869, 1707, 3201
EciI GGCGGA 2 cut(s) 294, 3342
Ecl136II GAGCTC 2 cut(s) 291, 2362
Eco130I CCWWGG 6 cut(s) 966, 1011, 1659, 2058, 2777, 3156
Eco147I AGGCCT 1 cut(s) 3356
Eco24I GRGCYC 3 cut(s) 293, 2364, 3007
Eco31I GGTCTC 2 cut(s) 1710, 3371
Eco47I GGWCC 8 cut(s) 34, 66, 394, 953, 2535, 2720, 2813, 3023
Eco53kI GAGCTC 2 cut(s) 291, 2362
Eco57I CTGAAG 7 cut(s) 8, 1151, 1302, 1731, 2124, 3087, 3182
Eco72I CACGTG 2 cut(s) 2396, 2549
Eco88I CYCGRG 1 cut(s) 385
EcoICRI GAGCTC 2 cut(s) 291, 2362
EcoO109I RGGNCCY 2 cut(s) 394, 2535
EcoRII CCWGG 2 cut(s) 320, 2331
EcoT14I CCWWGG 6 cut(s) 966, 1011, 1659, 2058, 2777, 3156
EcoT22I ATGCAT 3 cut(s) 676, 2620, 2950
EcoT38I GRGCYC 3 cut(s) 293, 2364, 3007
ErhI CCWWGG 6 cut(s) 966, 1011, 1659, 2058, 2777, 3156
FaqI GGGAC 7 cut(s) 407, 446, 518, 646, 823, 1979, 2521
FauI CCCGC 2 cut(s) 45, 383
FauNDI CATATG 1 cut(s) 2878
FbaI TGATCA 1 cut(s) 1474
FblI GTMKAC 3 cut(s) 449, 757, 1050
Fnu4HI GCNGC 7 cut(s) 326, 849, 1236, 1314, 1572, 2661, 2906
FriOI GRGCYC 3 cut(s) 293, 2364, 3007
Fsp4HI GCNGC 7 cut(s) 326, 849, 1236, 1314, 1572, 2661, 2906
FspI TGCGCA 1 cut(s) 246
GlaI GCGC 1 cut(s) 246
GluI GCNGC 7 cut(s) 326, 849, 1236, 1314, 1572, 2661, 2906
GsaI CCCAGC 1 cut(s) 2175
GsuI CTGGAG 4 cut(s) 1734, 2100, 2496, 2580
HaeIII GGCC 6 cut(s) 328, 642, 766, 1149, 2066, 3356
HgaI GACGC 2 cut(s) 2397, 2877
HhaI GCGC 1 cut(s) 247
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 2 cut(s) 55, 1625
HindII GTYRAC 2 cut(s) 55, 1625
HpaI GTTAAC 1 cut(s) 55
HphI GGTGA 6 cut(s) 983, 1133, 1177, 1625, 1871, 2243
Hpy188III TCNNGA 9 cut(s) 434, 1709, 2051, 2142, 2357, 2475, 2538, 2597, 2975
Hpy99I CGWCG 3 cut(s) 128, 271, 3257
HpyCH4IV ACGT 6 cut(s) 1280, 2395, 2450, 2548, 3181, 3389
HpyF10VI GCNNNNNNNGC 8 cut(s) 313, 322, 334, 848, 2216, 2359, 2911, 3333
HpySE526I ACGT 6 cut(s) 1280, 2395, 2450, 2548, 3181, 3389
HspAI GCGC 1 cut(s) 245
KflI GGGWCCC 2 cut(s) 394, 2535
Kpn2I TCCGGA 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 1474
KspAI GTTAAC 1 cut(s) 55
LguI GCTCTTC 2 cut(s) 1707, 3201
LmnI GCTCC 3 cut(s) 436, 2884, 3329
Lsp1109I GCAGC 3 cut(s) 1247, 1300, 2672
MaeII ACGT 6 cut(s) 1280, 2395, 2450, 2548, 3181, 3389
MaeIII GTNAC 5 cut(s) 774, 971, 1532, 1943, 2327
MfeI CAATTG 4 cut(s) 118, 929, 1116, 2423
MflI RGATCY 6 cut(s) 1356, 1456, 1684, 2003, 2144, 2651
MhlI GDGCHC 8 cut(s) 147, 158, 293, 730, 886, 1224, 2364, 3007
MluI ACGCGT 1 cut(s) 1097
MlyI GAGTC 1 cut(s) 1046
MmeI TCCRAC 4 cut(s) 290, 1263, 3096, 3244
Mph1103I ATGCAT 3 cut(s) 676, 2620, 2950
MroI TCCGGA 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 1795
MslI CAYNNNNRTG 3 cut(s) 1227, 1446, 2453
MspA1I CMGCKG 3 cut(s) 851, 1238, 2663
MspR9I CCNGG 7 cut(s) 151, 322, 386, 387, 2333, 3338, 3382
MunI CAATTG 4 cut(s) 118, 929, 1116, 2423
Mva1269I GAATGC 2 cut(s) 676, 1432
MvaI CCWGG 2 cut(s) 322, 2333
MvnI CGCG 1 cut(s) 1099
MwoI GCNNNNNNNGC 8 cut(s) 313, 322, 334, 848, 2216, 2359, 2911, 3333
NciI CCSGG 5 cut(s) 151, 386, 387, 3338, 3382
NcoI CCATGG 2 cut(s) 1011, 1659
NdeI CATATG 1 cut(s) 2878
NlaIV GGNNCC 8 cut(s) 36, 395, 396, 641, 1657, 2065, 2536, 2537
NmuCI GTSAC 4 cut(s) 971, 1532, 1943, 2327
NsbI TGCGCA 1 cut(s) 246
NsiI ATGCAT 3 cut(s) 676, 2620, 2950
NspI RCATGY 6 cut(s) 374, 1483, 1785, 2192, 3301, 3336
NspV TTCGAA 2 cut(s) 1886, 2986
PaeI GCATGC 1 cut(s) 3336
PagI TCATGA 1 cut(s) 2050
PceI AGGCCT 1 cut(s) 3356
PciI ACATGT 2 cut(s) 1479, 2188
PciSI GCTCTTC 2 cut(s) 1707, 3201
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 2392
PctI GAATGC 2 cut(s) 676, 1432
PdmI GAANNNNTTC 1 cut(s) 1795
PflFI GACNNNGTC 1 cut(s) 1142
PkrI GCNGC 7 cut(s) 327, 850, 1237, 1315, 1573, 2662, 2907
PleI GAGTC 1 cut(s) 1046
PmaCI CACGTG 2 cut(s) 2396, 2549
PmlI CACGTG 2 cut(s) 2396, 2549
PpsI GAGTC 1 cut(s) 1046
Ppu21I YACGTR 2 cut(s) 2396, 2549
PpuMI RGGWCCY 2 cut(s) 394, 2535
PscI ACATGT 2 cut(s) 1479, 2188
PshAI GACNNNNGTC 1 cut(s) 951
Psp124BI GAGCTC 2 cut(s) 293, 2364
Psp5II RGGWCCY 2 cut(s) 394, 2535
Psp6I CCWGG 2 cut(s) 320, 2331
PspCI CACGTG 2 cut(s) 2396, 2549
PspFI CCCAGC 1 cut(s) 2171
PspGI CCWGG 2 cut(s) 320, 2331
PspN4I GGNNCC 8 cut(s) 36, 395, 396, 641, 1657, 2065, 2536, 2537
PspPPI RGGWCCY 2 cut(s) 394, 2535
PsrI GAACNNNNNNTAC 4 cut(s) 476, 508, 2382, 2414
PstNI CAGNNNCTG 1 cut(s) 3065
PsuI RGATCY 6 cut(s) 1356, 1456, 1684, 2003, 2144, 2651
PsyI GACNNNGTC 1 cut(s) 1142
PvuII CAGCTG 1 cut(s) 1238
RsaI GTAC 8 cut(s) 1509, 2193, 2382, 2391, 2464, 2667, 2766, 2827
RsaNI GTAC 8 cut(s) 1508, 2192, 2381, 2390, 2463, 2666, 2765, 2826
RseI CAYNNNNRTG 3 cut(s) 1227, 1446, 2453
SacI GAGCTC 2 cut(s) 293, 2364
SapI GCTCTTC 2 cut(s) 1707, 3201
SatI GCNGC 7 cut(s) 326, 849, 1236, 1314, 1572, 2661, 2906
SchI GAGTC 1 cut(s) 1046
ScrFI CCNGG 7 cut(s) 151, 322, 386, 387, 2333, 3338, 3382
SduI GDGCHC 8 cut(s) 147, 158, 293, 730, 886, 1224, 2364, 3007
SfcI CTRYAG 2 cut(s) 1161, 1362
SfuI TTCGAA 2 cut(s) 1886, 2986
SinI GGWCC 8 cut(s) 34, 66, 394, 953, 2535, 2720, 2813, 3023
SmaI CCCGGG 1 cut(s) 387
SmiMI CAYNNNNRTG 3 cut(s) 1227, 1446, 2453
SmlI CTYRAG 1 cut(s) 2038
SmoI CTYRAG 1 cut(s) 2038
SpeI ACTAGT 2 cut(s) 1510, 3362
SphI GCATGC 1 cut(s) 3336
SseBI AGGCCT 1 cut(s) 3356
SspI AATATT 2 cut(s) 1343, 2686
SstI GAGCTC 2 cut(s) 293, 2364
StuI AGGCCT 1 cut(s) 3356
StyD4I CCNGG 7 cut(s) 149, 320, 384, 385, 2331, 3336, 3380
StyI CCWWGG 6 cut(s) 966, 1011, 1659, 2058, 2777, 3156
TaiI ACGT 6 cut(s) 1283, 2398, 2453, 2551, 3184, 3392
TaqI TCGA 5 cut(s) 1886, 2602, 2986, 2992, 3175
TaqII GACCGA 1 cut(s) 2485
TatI WGTACW 1 cut(s) 2191
TauI GCSGC 4 cut(s) 328, 851, 1574, 2908
TscAI CASTG 8 cut(s) 906, 1772, 1827, 2094, 2172, 2722, 2915, 3310
TseFI GTSAC 4 cut(s) 971, 1532, 1943, 2327
TseI GCWGC 3 cut(s) 1235, 1313, 2660
Tsp45I GTSAC 4 cut(s) 971, 1532, 1943, 2327
TspMI CCCGGG 1 cut(s) 385
TspRI CASTG 8 cut(s) 906, 1772, 1827, 2094, 2172, 2722, 2915, 3310
Tth111I GACNNNGTC 1 cut(s) 1142
VneI GTGCAC 2 cut(s) 143, 882
VpaK11BI GGWCC 8 cut(s) 34, 66, 394, 953, 2535, 2720, 2813, 3023
XapI RAATTY 6 cut(s) 530, 935, 1110, 1561, 2014, 3034
XceI RCATGY 6 cut(s) 374, 1483, 1785, 2192, 3301, 3336
XcmI CCANNNNNNNNNTGG 2 cut(s) 1544, 1696
XmaI CCCGGG 1 cut(s) 385
XmaJI CCTAGG 1 cut(s) 2777
XmiI GTMKAC 3 cut(s) 449, 757, 1050
XmnI GAANNNNTTC 1 cut(s) 1795
Zsp2I ATGCAT 3 cut(s) 676, 2620, 2950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.