pycom06g11310

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0013309
Physical Location & Seq
Reverse (-)
16631862 .. 16633475
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1278 bp
ATGGCAGCCACCACTAGCTTCCCCTACTCCTCTGCAATTTTCCTTTCAATTCTCATCATTTCAGGGTTCATGTTTCCAGCAACGGTAAATTCAATGGGGATAAACTACGGCCAAATCGCCAACAACTTACCTTCTCCCGACGACGTCGTTCCGCTGGTGAAATCCATTGGCATCTCCAAGATCAAGCTCTACGATGCCGATCCCAAAGTCCTCAAAGCCTTCGCCAACACCGGCGTCGAGTTCATAGTGGGCCTCCCCAACGACTACCTTGCCAAGGTCCAGGACCCGGCCCAGGCCCAATCCTGGGTCAAGTCCAATGTCCAGGCCCATCTCCCCGCCACCAACATCACCTGCATCTTCGTCGGCAACGAGGTCCTCACCTTCAACGACACGTCGTTGAGCAACAATCTCCTCCCGGCAATGCAGAGCGTCCACACCGCCCTCGTCGGTCTTGGCCTCGACAAGCAAGTCACCGTCACCACCGCCCACTCCCTCTCCATTCTCCAGACCTCGTATCCGCCGTCCGCCGGCGCTTTCCGCCGAGATCTGACCGGCTGCATCACTCCGATCCTCAATTTCCACGCCAAAACCGGATCGCCGTTCCTGATCAATGCCTACCCTTACTTCGCTTACAAATCGAACCCTAAGCAAGTGCCGCTCGAGTACGTCCTCTTCCAGCCGAACTCCGGCTCCCTTGATCCTGCCACCAATCTCCACTACGACAACATGCTGTTCGCCCAGATCGACGCCGTGTACTCCGCCCTGAGTTCCCTCGGTTTCAAGAAGCTCCCGGTCCACATCTCCGAGACCGGGTGGCCGTCGAAGGGGGACGAGGACGAGGCCGGAGCGACGCCGGAGAACGCGAAGAAGTACAACGGAAATCTGATCAAGCTCATTTGCCAGAAGAAGGGCACGCCGCTCAGGCCCGGGTCGGATCTCAACATCTACGTGTTCGCCCTGTTCAATGAGAACATGAAACCCGGCCCGAGTTCAGAGAGGAACTTCGGGCTGTTTAAACCCGACGGGTCGCCCGCGTACTCGATCGGGCTCTCGACGGGCAACATTTCCTTTGGTAACTCTAATTCGAATTCGAGTTCGGGTTCGGGTTCGAGTTCGGGCCAGGGACAGGTAAATCCGATTAGTAATGGTTGGTCGCCGTCGGGTTCTTCCGGCACGCCATACTTGTCCATTTCCTCCGCCCCCGCCACGGAGAGATTCCATGTGATTGGTTGGATTGCGATGATGTGGCTGCTGGCCTCGTTGTTGATGAAAAGCTGA

Protein Analysis

426

Amino Acids

45.38

Weight (kDa)

7.68

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 32 - 348 1.6e-86 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 359
AasI GACNNNNNNGTC 1 cut(s) 467
AatII GACGTC 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 359
AccBSI CCGCTC 2 cut(s) 658, 919
AccII CGCG 2 cut(s) 863, 1034
AclWI GGATC 5 cut(s) 194, 562, 601, 692, 942
AcoI YGGCCR 2 cut(s) 109, 815
AcsI RAATTY 2 cut(s) 88, 1087
AcyI GRCGYC 4 cut(s) 144, 234, 747, 851
AfaI GTAC 4 cut(s) 665, 755, 872, 1037
AflIII ACRYGT 2 cut(s) 390, 948
AgsI TTSAA 5 cut(s) 48, 93, 385, 781, 964
AjiI CACGTC 1 cut(s) 393
AjnI CCWGG 5 cut(s) 279, 291, 302, 321, 1119
AloI GAACNNNNNNTCC 2 cut(s) 674, 706
AluBI AGCT 5 cut(s) 18, 187, 787, 892, 1275
AluI AGCT 5 cut(s) 18, 187, 787, 892, 1275
Alw26I GTCTC 1 cut(s) 800
AlwI GGATC 5 cut(s) 194, 562, 601, 692, 942
Ama87I CYCGRG 3 cut(s) 659, 926, 985
ApeKI GCWGC 3 cut(s) 5, 555, 1249
ApoI RAATTY 2 cut(s) 88, 1087
AspLEI GCGC 1 cut(s) 533
AsuC2I CCSGG 7 cut(s) 287, 416, 791, 811, 927, 928, 981
AsuHPI GGTGA 5 cut(s) 169, 340, 370, 463, 469
AsuII TTCGAA 1 cut(s) 1085
AvaI CYCGRG 3 cut(s) 659, 926, 985
AvaII GGWCC 4 cut(s) 277, 283, 373, 793
BaeGI GKGCMC 1 cut(s) 914
BanII GRGCYC 1 cut(s) 1050
BarI GAAGNNNNNNTAC 2 cut(s) 656, 688
BbvI GCAGC 3 cut(s) 17, 542, 1236
BccI CCATC 1 cut(s) 336
BceAI ACGGC 6 cut(s) 124, 505, 583, 734, 802, 1141
BcgI CGANNNNNNTGC 4 cut(s) 251, 285, 343, 377
BciT130I CCWGG 5 cut(s) 281, 293, 304, 323, 1121
BciVI GTATCC 1 cut(s) 525
BclI TGATCA 2 cut(s) 606, 885
BcnI CCSGG 7 cut(s) 287, 416, 791, 811, 927, 928, 981
BcoDI GTCTC 1 cut(s) 800
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 534
BfuAI ACCTGC 1 cut(s) 359
BfuI GTATCC 1 cut(s) 525
BglI GCCNNNNNGGC 1 cut(s) 922
BglII AGATCT 1 cut(s) 544
BisI GCNGC 5 cut(s) 6, 556, 656, 917, 1250
BlsI GCNGC 5 cut(s) 7, 557, 657, 918, 1251
Bme18I GGWCC 4 cut(s) 277, 283, 373, 793
BmeT110I CYCGRG 3 cut(s) 659, 926, 985
BmgBI CACGTC 1 cut(s) 393
BmiI GGNNCC 2 cut(s) 285, 691
BmsI GCATC 4 cut(s) 180, 184, 363, 567
BpmI CTGGAG 1 cut(s) 488
Bpu10I CCTNAGC 2 cut(s) 645, 920
Bpu14I TTCGAA 1 cut(s) 1085
BpuMI CCSGG 7 cut(s) 287, 416, 791, 811, 927, 928, 981
BsaAI YACGTR 1 cut(s) 949
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 4 cut(s) 144, 234, 747, 851
BsaI GGTCTC 1 cut(s) 800
BsaJI CCNNGG 7 cut(s) 273, 291, 303, 772, 926, 1120, 1206
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 4 cut(s) 479, 509, 674, 704
Bse118I RCCGGY 3 cut(s) 230, 527, 551
Bse3DI GCAATG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 5 cut(s) 281, 293, 304, 323, 1121
BseDI CCNNGG 7 cut(s) 273, 291, 303, 772, 926, 1120, 1206
BseJI GATNNNNATC 1 cut(s) 198
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 755, 934
BseRI GAGGAG 2 cut(s) 19, 401
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 3 cut(s) 17, 542, 1236
Bsh1236I CGCG 2 cut(s) 863, 1034
Bsh1285I CGRYCG 1 cut(s) 1044
BsiEI CGRYCG 1 cut(s) 1044
BsiHKCI CYCGRG 3 cut(s) 659, 926, 985
BslFI GGGAC 2 cut(s) 842, 1137
BsmAI GTCTC 1 cut(s) 800
BsmFI GGGAC 2 cut(s) 842, 1137
Bso31I GGTCTC 1 cut(s) 800
BsoBI CYCGRG 3 cut(s) 659, 926, 985
Bsp119I TTCGAA 1 cut(s) 1085
Bsp1286I GDGCHC 2 cut(s) 914, 1050
BspCNI CTCAG 2 cut(s) 756, 933
BspFNI CGCG 2 cut(s) 863, 1034
BspLI GGNNCC 2 cut(s) 285, 691
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 5 cut(s) 194, 562, 601, 692, 942
BspT104I TTCGAA 1 cut(s) 1085
BspTNI GGTCTC 1 cut(s) 800
BsrBI CCGCTC 2 cut(s) 658, 919
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 3 cut(s) 230, 527, 551
BssAI RCCGGY 3 cut(s) 230, 527, 551
BssECI CCNNGG 7 cut(s) 273, 291, 303, 772, 926, 1120, 1206
BssNI GRCGYC 4 cut(s) 144, 234, 747, 851
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 5 cut(s) 281, 293, 304, 323, 1121
Bst4CI ACNGT 2 cut(s) 85, 475
Bst6I CTCTTC 1 cut(s) 677
BstACI GRCGYC 4 cut(s) 144, 234, 747, 851
BstBAI YACGTR 1 cut(s) 949
BstBI TTCGAA 1 cut(s) 1085
BstC8I GCNNGC 5 cut(s) 529, 914, 1032, 1175, 1254
BstDEI CTNAG 3 cut(s) 645, 764, 920
BstDSI CCRYGG 1 cut(s) 1206
BstENI CCTNNNNNAGG 1 cut(s) 272
BstFNI CGCG 2 cut(s) 863, 1034
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstMAI GTCTC 1 cut(s) 800
BstMCI CGRYCG 1 cut(s) 1044
BstMWI GCNNNNNNNGC 3 cut(s) 537, 655, 922
BstNI CCWGG 5 cut(s) 281, 293, 304, 323, 1121
BstNSI RCATGY 1 cut(s) 730
BstSLI GKGCMC 1 cut(s) 914
BstUI CGCG 2 cut(s) 863, 1034
BstV1I GCAGC 3 cut(s) 17, 542, 1236
BstX2I RGATCY 2 cut(s) 544, 934
BstXI CCANNNNNNTGG 1 cut(s) 1226
BstYI RGATCY 2 cut(s) 544, 934
BsuI GTATCC 1 cut(s) 525
BtgI CCRYGG 1 cut(s) 1206
BtgZI GCGATG 1 cut(s) 1253
BtrI CACGTC 1 cut(s) 393
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 5 cut(s) 529, 914, 1032, 1175, 1254
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 3 cut(s) 230, 527, 551
Cfr9I CCCGGG 1 cut(s) 926
CseI GACGC 4 cut(s) 223, 418, 755, 859
Csp6I GTAC 4 cut(s) 664, 754, 871, 1036
CviAII CATG 4 cut(s) 70, 727, 973, 1220
CviQI GTAC 4 cut(s) 664, 754, 871, 1036
DdeI CTNAG 3 cut(s) 645, 764, 920
DraI TTTAAA 1 cut(s) 1015
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 2 cut(s) 109, 815
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
EciI GGCGGA 5 cut(s) 507, 514, 527, 748, 1186
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 1050
Eco31I GGTCTC 1 cut(s) 800
Eco47I GGWCC 4 cut(s) 277, 283, 373, 793
Eco88I CYCGRG 3 cut(s) 659, 926, 985
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 2 cut(s) 283, 373
EcoRI GAATTC 1 cut(s) 1087
EcoRII CCWGG 5 cut(s) 279, 291, 302, 321, 1119
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 1050
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 4 cut(s) 73, 730, 976, 1223
FaiI YATR 6 cut(s) 71, 245, 728, 974, 1180, 1221
FaqI GGGAC 2 cut(s) 842, 1137
FatI CATG 4 cut(s) 69, 726, 972, 1219
FauI CCCGC 3 cut(s) 343, 1039, 1210
FbaI TGATCA 2 cut(s) 606, 885
Fnu4HI GCNGC 5 cut(s) 6, 556, 656, 917, 1250
FriOI GRGCYC 1 cut(s) 1050
Fsp4HI GCNGC 5 cut(s) 6, 556, 656, 917, 1250
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 532
GluI GCNGC 5 cut(s) 6, 556, 656, 917, 1250
GsuI CTGGAG 1 cut(s) 488
HaeII RGCGCY 1 cut(s) 534
HgaI GACGC 4 cut(s) 223, 418, 755, 859
HhaI GCGC 1 cut(s) 533
Hin1I GRCGYC 4 cut(s) 144, 234, 747, 851
Hin1II CATG 4 cut(s) 73, 730, 976, 1223
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HinfI GANTC 1 cut(s) 1215
HphI GGTGA 5 cut(s) 169, 340, 370, 463, 469
Hpy166II GTNNAC 3 cut(s) 433, 754, 796
Hpy188I TCNGA 7 cut(s) 549, 567, 805, 885, 934, 994, 1137
Hpy188III TCNNGA 5 cut(s) 137, 505, 604, 781, 1051
Hpy8I GTNNAC 3 cut(s) 433, 754, 796
HpyAV CCTTC 5 cut(s) 141, 229, 391, 817, 901
HpyCH4III ACNGT 2 cut(s) 85, 475
HpyCH4IV ACGT 4 cut(s) 144, 392, 666, 948
HpyCH4V TGCA 4 cut(s) 35, 354, 424, 558
HpyF10VI GCNNNNNNNGC 3 cut(s) 537, 655, 922
HpyF3I CTNAG 3 cut(s) 645, 764, 920
HpySE526I ACGT 4 cut(s) 144, 392, 666, 948
Hsp92I GRCGYC 4 cut(s) 144, 234, 747, 851
Hsp92II CATG 4 cut(s) 73, 730, 976, 1223
HspAI GCGC 1 cut(s) 531
KroI GCCGGC 1 cut(s) 527
KroNI GCCGGC 1 cut(s) 529
Ksp22I TGATCA 2 cut(s) 606, 885
LmnI GCTCC 3 cut(s) 695, 792, 845
Lsp1109I GCAGC 3 cut(s) 17, 542, 1236
LweI GCATC 4 cut(s) 180, 184, 363, 567
MaeI CTAG 1 cut(s) 15
MaeII ACGT 4 cut(s) 144, 392, 666, 948
MaeIII GTNAC 3 cut(s) 469, 475, 1073
MbiI CCGCTC 2 cut(s) 658, 919
MboII GAAGA 5 cut(s) 349, 664, 877, 916, 1158
MflI RGATCY 2 cut(s) 544, 934
MhlI GDGCHC 2 cut(s) 914, 1050
MluCI AATT 6 cut(s) 36, 48, 88, 574, 1081, 1087
MmeI TCCRAC 2 cut(s) 912, 1211
MreI CGCCGGCG 1 cut(s) 527
MroNI GCCGGC 1 cut(s) 527
MseI TTAA 1 cut(s) 1014
MslI CAYNNNNRTG 1 cut(s) 947
MspA1I CMGCKG 1 cut(s) 154
MssI GTTTAAAC 1 cut(s) 1015
MvaI CCWGG 5 cut(s) 281, 293, 304, 323, 1121
MvnI CGCG 2 cut(s) 863, 1034
MwoI GCNNNNNNNGC 3 cut(s) 537, 655, 922
NaeI GCCGGC 1 cut(s) 529
NciI CCSGG 7 cut(s) 287, 416, 791, 811, 927, 928, 981
NgoMIV GCCGGC 1 cut(s) 527
NlaIII CATG 4 cut(s) 73, 730, 976, 1223
NlaIV GGNNCC 2 cut(s) 285, 691
NmeAIII GCCGAG 1 cut(s) 566
NmuCI GTSAC 2 cut(s) 469, 475
NspI RCATGY 1 cut(s) 730
NspV TTCGAA 1 cut(s) 1085
PaeR7I CTCGAG 1 cut(s) 659
PaqCI CACCTGC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 3 cut(s) 366, 518, 741
PdiI GCCGGC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 1215
PflFI GACNNNGTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 5 cut(s) 7, 557, 657, 918, 1251
Ple19I CGATCG 1 cut(s) 1044
PmeI GTTTAAAC 1 cut(s) 1015
Ppu21I YACGTR 1 cut(s) 949
PpuMI RGGWCCY 2 cut(s) 283, 373
Psp5II RGGWCCY 2 cut(s) 283, 373
Psp6I CCWGG 5 cut(s) 279, 291, 302, 321, 1119
PspGI CCWGG 5 cut(s) 279, 291, 302, 321, 1119
PspN4I GGNNCC 2 cut(s) 285, 691
PspPPI RGGWCCY 2 cut(s) 283, 373
PspXI VCTCGAGB 1 cut(s) 659
PsuI RGATCY 2 cut(s) 544, 934
PsyI GACNNNGTC 1 cut(s) 143
PvuI CGATCG 1 cut(s) 1044
RsaI GTAC 4 cut(s) 665, 755, 872, 1037
RsaNI GTAC 4 cut(s) 664, 754, 871, 1036
RseI CAYNNNNRTG 1 cut(s) 947
SaqAI TTAA 1 cut(s) 1014
SatI GCNGC 5 cut(s) 6, 556, 656, 917, 1250
SduI GDGCHC 2 cut(s) 914, 1050
SfaNI GCATC 4 cut(s) 180, 184, 363, 567
Sfr274I CTCGAG 1 cut(s) 659
SfuI TTCGAA 1 cut(s) 1085
SgrAI CRCCGGYG 2 cut(s) 230, 527
SinI GGWCC 4 cut(s) 277, 283, 373, 793
SlaI CTCGAG 1 cut(s) 659
SmaI CCCGGG 1 cut(s) 928
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 6 cut(s) 36, 48, 88, 574, 1081, 1087
SspMI CTAG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 85, 475
TaiI ACGT 4 cut(s) 147, 395, 669, 951
TaqII GACCGA 1 cut(s) 437
TasI AATT 6 cut(s) 36, 48, 88, 574, 1081, 1087
TatI WGTACW 2 cut(s) 753, 870
TauI GCSGC 2 cut(s) 658, 919
TfiI GAWTC 1 cut(s) 1215
Tru1I TTAA 1 cut(s) 1014
Tru9I TTAA 1 cut(s) 1014
TseFI GTSAC 2 cut(s) 469, 475
TseI GCWGC 3 cut(s) 5, 555, 1249
Tsp45I GTSAC 2 cut(s) 469, 475
TspDTI ATGAA 3 cut(s) 58, 232, 989
TspGWI ACGGA 2 cut(s) 891, 1223
TspMI CCCGGG 1 cut(s) 926
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 4 cut(s) 277, 283, 373, 793
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 2 cut(s) 88, 1087
XceI RCATGY 1 cut(s) 730
XhoI CTCGAG 1 cut(s) 659
XmaI CCCGGG 1 cut(s) 926
XspI CTAG 1 cut(s) 15
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.