Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014108

Physical Location & Seq

Genomic Coordinates Reverse (-)

16942315 .. 16943449

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGACCACCGCCAACAGTGGGGCTGTCAGCGGTGGAAGTAGCTGAGGTTAACCTCATCCACCTTTCTCCGCCACTGCTTTCACCTCCAGCAGGGCCAACGACATGCGACTCCCACGCCTGCCGCTGGTGGCCTTACTCCGGCTCAAAAGAATTCGAGGCCAACGCCGCCATGATCATCATCGTCCTCCTTTGCGCTCTCACTTGCGCGTTGGGTCTTAATGCTGCCATCCGCTGCTTCCTCCGCGGTGGCAGCACCAACCCTTCCGATCGCCAGAACAACAGTGCTCCTCAGAGACAACAGGAGTTGGTTGATGTTCAGCAGAAGAGCAATGTGGCAGCGGCTAAGTGCTTAGAGGCGGCTCCGGCGGTGATTTACACGGCAGAGATGAAGGCGAAGCTGGCAGGAGTGGAGGCGGAGTGCGCTATTTGCTTGTCGGAGTTTGTGGAGGGGGAAGGGATTAGAGTGATAGGCAGGTGTAAACATGGTTTTCATGCTCAGTGTATTCAGGAATGGTTGTCTTCTCACTCCTCTTGTCCCACGTGCCGACGCACGTGCCTTCCTCAGTCTCCGTCTCAGTCACCACCACCTCCGCAACCCGCCAGGGATCATAGTTCCGAACAAAATCCTATGCCGGAAAGCGGCCCGTATAATACATCAATTAAAACCAGCATTTATGGAAACCCTTGCGTTTTTACTACCCTTTGGCCTGCATCTGTAGAAATAACCATCCAAATCTATACGGCTTTACCGAAAATGCCTCTGGCCTTTAGTACACTGGCCGACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

264

Amino Acids

28.26

Weight (kDa)

6.3

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	140 - 183	5.4e-14	Ring finger domain
zf-RING_11	PF17123	140 - 169	3.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	140 - 182	1.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	140 - 184	6.6e-06	zinc-RING finger domain
zf-rbx1	PF12678	141 - 183	5.2e-09	RING-H2 zinc finger domain
zf-C3HC4	PF00097	141 - 182	2.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	156 - 185	6.7e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17245 AT5G47610
fragaria_vesca	FvH4_5g10181
malus_domestica	MD06G1127400.v1.1 MD10G1185300.v1.1 MD14G1142700.v1.1
prunus_persica	Prupe.5G137200_v2.0.a1
pyrus_communis	pycom06g11720
rosa_chinensis	RchiOBHm_Chr7g0188061
rosa_laevigata	RLG00000004730
rosa_multiflora	Rmu_ssc0000422.1_g000018
rosa_roxburghii	Rroxscaffold_3G00266770
rosa_rugosa	Rorug06G0487900
rosa_samantha	Rh7AG092200 Rh7BG093800 Rh7CG093100
rosa_wichuraiana	Rw7G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	465
Acc36I	ACCTGC	1 cut(s)	465
AccII	CGCG	2 cut(s)	209, 246
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	1 cut(s)	152
AcvI	CACGTG	2 cut(s)	543, 555
AfaI	GTAC	1 cut(s)	775
AfiI	CCNNNNNNNGG	5 cut(s)	20, 92, 126, 140, 641
AjnI	CCWGG	1 cut(s)	602
AluBI	AGCT	2 cut(s)	44, 400
AluI	AGCT	2 cut(s)	44, 400
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	3 cut(s)	289, 573, 579
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	7 cut(s)	95, 131, 159, 643, 707, 765, 780
ApeKI	GCWGC	4 cut(s)	224, 234, 252, 338
ApoI	RAATTY	1 cut(s)	152
AspLEI	GCGC	3 cut(s)	197, 209, 425
AspS9I	GGNCC	2 cut(s)	95, 644
AsuHPI	GGTGA	3 cut(s)	75, 382, 573
BbrPI	CACGTG	2 cut(s)	543, 555
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	289
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	4 cut(s)	211, 221, 264, 350
BccI	CCATC	2 cut(s)	236, 737
BceAI	ACGGC	2 cut(s)	396, 759
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	604
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	3 cut(s)	289, 573, 579
BfmI	CTRYAG	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	465
BisI	GCNGC	9 cut(s)	124, 168, 225, 235, 253, 339, 342, 360, 643
BlsI	GCNGC	9 cut(s)	125, 169, 226, 236, 254, 340, 343, 361, 644
Bme1390I	CCNGG	1 cut(s)	604
BmgT120I	GGNCC	2 cut(s)	95, 644
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	604
BmsI	GCATC	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	45
BsaAI	YACGTR	2 cut(s)	543, 555
BsaBI	GATNNNNATC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	244, 603
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 92, 126, 140, 641
Bse1I	ACTGG	1 cut(s)	783
Bse3DI	GCAATG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	604
BseDI	CCNNGG	2 cut(s)	244, 603
BseGI	GGATG	3 cut(s)	57, 228, 729
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	5 cut(s)	20, 92, 126, 140, 641
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	5 cut(s)	36, 305, 512, 578, 590
BseNI	ACTGG	1 cut(s)	783
BseRI	GAGGAG	2 cut(s)	279, 520
BseXI	GCAGC	4 cut(s)	211, 221, 264, 350
Bsh1236I	CGCG	2 cut(s)	209, 246
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	7 cut(s)	97, 133, 161, 645, 709, 767, 782
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	141, 365, 635
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	5 cut(s)	20, 92, 126, 140, 641
BsmAI	GTCTC	3 cut(s)	289, 573, 579
BsmBI	CGTCTC	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	7 cut(s)	97, 133, 161, 645, 709, 767, 782
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	174, 268, 607
BspANI	GGCC	7 cut(s)	97, 133, 161, 645, 709, 767, 782
BspCNI	CTCAG	5 cut(s)	37, 304, 511, 577, 589
BspFNI	CGCG	2 cut(s)	209, 246
BspLI	GGNNCC	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	615
BspQI	GCTCTTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	783
BssECI	CCNNGG	2 cut(s)	244, 603
BssMI	GATC	3 cut(s)	174, 268, 607
Bst2UI	CCWGG	1 cut(s)	604
Bst4CI	ACNGT	2 cut(s)	19, 284
Bst6I	CTCTTC	1 cut(s)	320
BstBAI	YACGTR	2 cut(s)	543, 555
BstC8I	GCNNGC	3 cut(s)	121, 402, 711
BstDEI	CTNAG	7 cut(s)	45, 291, 345, 352, 498, 564, 576
BstDSI	CCRYGG	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	57, 228, 729
BstFNI	CGCG	2 cut(s)	209, 246
BstHHI	GCGC	3 cut(s)	197, 209, 425
BstKTI	GATC	3 cut(s)	177, 271, 610
BstMAI	GTCTC	3 cut(s)	289, 573, 579
BstMBI	GATC	3 cut(s)	174, 268, 607
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	7 cut(s)	167, 243, 252, 365, 401, 422, 429
BstNI	CCWGG	1 cut(s)	604
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	602
BstSFI	CTRYAG	1 cut(s)	717
BstUI	CGCG	2 cut(s)	209, 246
BstV1I	GCAGC	4 cut(s)	211, 221, 264, 350
BstV2I	GAAGAC	1 cut(s)	513
BsuRI	GGCC	7 cut(s)	97, 133, 161, 645, 709, 767, 782
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	57, 228, 729
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	5 cut(s)	24, 74, 289, 506, 776
BveI	ACCTGC	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	121, 402, 711
CfoI	GCGC	3 cut(s)	197, 209, 425
Cfr13I	GGNCC	2 cut(s)	95, 644
Cfr42I	CCGCGG	1 cut(s)	247
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	774
CviAII	CATG	4 cut(s)	105, 172, 485, 494
CviQI	GTAC	1 cut(s)	774
DdeI	CTNAG	7 cut(s)	45, 291, 345, 352, 498, 564, 576
DpnI	GATC	3 cut(s)	176, 270, 609
DpnII	GATC	3 cut(s)	174, 268, 607
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	2 cut(s)	60, 431
Eco72I	CACGTG	2 cut(s)	543, 555
EcoNI	CCTNNNNNAGG	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	602
Esp3I	CGTCTC	1 cut(s)	579
FaeI	CATG	4 cut(s)	108, 175, 488, 497
FaiI	YATR	9 cut(s)	106, 173, 486, 495, 612, 632, 651, 678, 741
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	4 cut(s)	104, 171, 484, 493
FauI	CCCGC	1 cut(s)	607
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	9 cut(s)	124, 168, 225, 235, 253, 339, 342, 360, 643
FokI	GGATG	3 cut(s)	44, 215, 716
Fsp4HI	GCNGC	9 cut(s)	124, 168, 225, 235, 253, 339, 342, 360, 643
GlaI	GCGC	3 cut(s)	196, 208, 424
GluI	GCNGC	9 cut(s)	124, 168, 225, 235, 253, 339, 342, 360, 643
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	7 cut(s)	97, 133, 161, 645, 709, 767, 782
HapII	CCGG	3 cut(s)	141, 365, 635
HgaI	GACGC	1 cut(s)	558
HhaI	GCGC	3 cut(s)	197, 209, 425
Hin1II	CATG	4 cut(s)	108, 175, 488, 497
Hin6I	GCGC	3 cut(s)	195, 207, 423
HinP1I	GCGC	3 cut(s)	195, 207, 423
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	110
HpaI	GTTAAC	1 cut(s)	52
HpaII	CCGG	3 cut(s)	141, 365, 635
HphI	GGTGA	3 cut(s)	75, 382, 573
Hpy166II	GTNNAC	3 cut(s)	52, 482, 776
Hpy188I	TCNGA	4 cut(s)	268, 294, 439, 619
Hpy188III	TCNNGA	1 cut(s)	509
Hpy8I	GTNNAC	3 cut(s)	52, 482, 776
Hpy99I	CGWCG	1 cut(s)	552
HpyAV	CCTTC	4 cut(s)	273, 385, 449, 569
HpyCH4III	ACNGT	2 cut(s)	19, 284
HpyCH4IV	ACGT	2 cut(s)	542, 554
HpyCH4V	TGCA	1 cut(s)	713
HpyF10VI	GCNNNNNNNGC	7 cut(s)	167, 243, 252, 365, 401, 422, 429
HpyF3I	CTNAG	7 cut(s)	45, 291, 345, 352, 498, 564, 576
HpySE526I	ACGT	2 cut(s)	542, 554
Hsp92II	CATG	4 cut(s)	108, 175, 488, 497
HspAI	GCGC	3 cut(s)	195, 207, 423
Ksp22I	TGATCA	1 cut(s)	174
KspAI	GTTAAC	1 cut(s)	52
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	174, 268, 607
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	292, 367
Lsp1109I	GCAGC	4 cut(s)	211, 221, 264, 350
LweI	GCATC	1 cut(s)	722
MaeII	ACGT	2 cut(s)	542, 554
MaeIII	GTNAC	1 cut(s)	579
MalI	GATC	3 cut(s)	176, 270, 609
MboI	GATC	3 cut(s)	174, 268, 607
MboII	GAAGA	2 cut(s)	337, 513
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	2 cut(s)	152, 660
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	417
MseI	TTAA	3 cut(s)	51, 219, 663
MspA1I	CMGCKG	5 cut(s)	32, 126, 234, 246, 341
MspI	CCGG	3 cut(s)	141, 365, 635
MspR9I	CCNGG	1 cut(s)	604
MvaI	CCWGG	1 cut(s)	604
MvnI	CGCG	2 cut(s)	209, 246
MwoI	GCNNNNNNNGC	7 cut(s)	167, 243, 252, 365, 401, 422, 429
NdeII	GATC	3 cut(s)	174, 268, 607
NlaIII	CATG	4 cut(s)	108, 175, 488, 497
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	579
NspI	RCATGY	1 cut(s)	108
PaqCI	CACCTGC	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	749
PkrI	GCNGC	9 cut(s)	125, 169, 226, 236, 254, 340, 343, 361, 644
Ple19I	CGATCG	1 cut(s)	271
PleI	GAGTC	1 cut(s)	104
PmaCI	CACGTG	2 cut(s)	543, 555
PmlI	CACGTG	2 cut(s)	543, 555
PpsI	GAGTC	1 cut(s)	104
Ppu21I	YACGTR	2 cut(s)	543, 555
Psp6I	CCWGG	1 cut(s)	602
PspCI	CACGTG	2 cut(s)	543, 555
PspGI	CCWGG	1 cut(s)	602
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	95, 644
PvuI	CGATCG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	775
RsaNI	GTAC	1 cut(s)	774
SacII	CCGCGG	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	51, 219, 663
SatI	GCNGC	9 cut(s)	124, 168, 225, 235, 253, 339, 342, 360, 643
Sau3AI	GATC	3 cut(s)	174, 268, 607
Sau96I	GGNCC	2 cut(s)	95, 644
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	604
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	1 cut(s)	722
SfcI	CTRYAG	1 cut(s)	717
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	152, 660
StyD4I	CCNGG	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	19, 284
TaiI	ACGT	2 cut(s)	545, 557
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	152, 660
TatI	WGTACW	1 cut(s)	773
TauI	GCSGC	5 cut(s)	126, 170, 344, 362, 645
Tru1I	TTAA	3 cut(s)	51, 219, 663
Tru9I	TTAA	3 cut(s)	51, 219, 663
TscAI	CASTG	5 cut(s)	24, 81, 289, 506, 783
TseFI	GTSAC	1 cut(s)	579
TseI	GCWGC	4 cut(s)	224, 234, 252, 338
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	2 cut(s)	404, 482
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	5 cut(s)	24, 81, 289, 506, 783
XagI	CCTNNNNNAGG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.