Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009141

Physical Location & Seq

Genomic Coordinates Reverse (-)

17967671 .. 17969304

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAAGATAGCAACCAAAGTGCTGTTCTTGATGGAAATTCTGAAAAAAAGAGCCTCAAATTATCATTACTGTCAGGCAATTGGATCAGTACAGCAGCCAGATTAGTCTCCCAAAACCCCACAGGGTGTCTGATTTTATTAAAAAATCGCCAAAACTCTGAAAATTGTGGAAGGGTCAGAGGGATTTTATGGTGTGGGATGACCAAGCAAGGTGAGGACTTGGTAAAAGAGGAGGACATGATACTTGAGGAAAATCAAGATATCGCAGCCGAATTCGTGACACACTTTCTTATGATGTCTGTTGATAAAAGGCTGGCATTGGACAAGATTGTCCATTTCAGGAGGGATTTTGCTCTGCCAGTTGATGTCAAGACTAATTGGTTGCACAAATATCCCCAACATTTCAAGGTGGTTAAAGATAATGAGGCAGTTGAGCATTTGGAACTTACAACGGGGATCACTGGGGCCAGTGATGATCATGTCCCGGGCTTGCTTTCGCTCTCTTTTCCGTTAAAGTTCCCCCCGAATTACAAAAAGCTGCTTAGCTTTACTGTTGAGAAGAGATTGGTGACTGATCACCTGACTCATTTTCAACGCGAACTTGAAATGCCCCAGAAGCTTATGAGGTTTAGCGTGTTCTTGAAGGAAGCTTACAAGGGCTCGGAGCTGATTGAGAAATGCCCCTTGGTGGTTTGGAAGGAAAAAGTCCAAAGCCTTATCGGTTACAGGGGAAAGAAGAAAATTGAAGCTTTTAGTGACATGGAAGACATGGCAGACAATGGTTTCTGTGAGAGCGATTTGGAAAGTGAGGACACCATTGAGTTGCAGCTTGAGCAAGAGGAGAAAGTGGATGACTTGGAGGCTGATTCACTTGCAGATGATTCTGAAATGGAGATTGAAGAGATCTGCAGTGCCTATGACTATGAGGATACTAAATGTCAAGGCCTACAAGGGACAGATGCCCCCACTATCAGATTTGTGAGAATTTGCTATGTTTCATGTCATGTTTTTAGATTGGAATCAGCTGCTGGATGGTTACAAGGACATCGCCAGTCAAGTTTCTTGAGCGTAGATGCCGGGACCGTGCATAAGGGCTTTCACAGTGTGGATGTTTATTGGCTAAAATTTCTTGGCCGCAATTTTCACATGCCAATCACCACGTACCTTGTAGAAAACAAAAATAAAAAAAATAAAAGAAAAGGAACAGCTCTACCACAAGAGGTTTTTCAGTGTGTTTTACAATTCATTCATGTTATGATATGCAGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

424

Amino Acids

48.33

Weight (kDa)

5.53

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	61 - 150	1.2e-21	Plant organelle RNA recognition domain
PORR	PF11955	207 - 242	3.5e-07	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21970 AT5G21970
fragaria_vesca	FvH4_6g20760
malus_domestica	MD14G1152200.v1.1
prunus_persica	Prupe.5G147200_v2.0.a1
pyrus_communis	pycom06g12860 pycom14g12660
rosa_chinensis	RchiOBHm_Chr3g0476641 RchiOBHm_Chr3g0476651
rosa_laevigata	RLG00000018714 RLG00000023758
rosa_multiflora	Rmu_sc0008241.1_g000013
rosa_roxburghii	Rroxscaffold_2G00121200 Rroxscaffold_6G00405130
rosa_rugosa	Rorug03G0156200
rosa_samantha	Rh2AG301200 Rh2DG325400 Rh3AG206500 Rh3BG238900 Rh3CG232800 Rh3DG232800
rosa_wichuraiana	Rw3G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AccII	CGCG	1 cut(s)	597
AciI	CCGC	1 cut(s)	1135
AclWI	GGATC	2 cut(s)	92, 464
AcoI	YGGCCR	1 cut(s)	1132
AcsI	RAATTY	4 cut(s)	37, 272, 984, 1124
AdeI	CACNNNGTG	2 cut(s)	126, 1105
AfaI	GTAC	2 cut(s)	91, 1163
AfiI	CCNNNNNNNGG	1 cut(s)	688
AgsI	TTSAA	6 cut(s)	406, 593, 605, 643, 746, 899
AjuI	GAANNNNNNNTTGG	4 cut(s)	9, 41, 668, 700
AluBI	AGCT	9 cut(s)	538, 546, 619, 650, 667, 749, 829, 1025, 1208
AluI	AGCT	9 cut(s)	538, 546, 619, 650, 667, 749, 829, 1025, 1208
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	92, 464
AlwNI	CAGNNNCTG	1 cut(s)	1028
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	3 cut(s)	465, 943, 1132
ApeKI	GCWGC	5 cut(s)	95, 266, 538, 826, 1025
ApoI	RAATTY	4 cut(s)	37, 272, 984, 1124
AspS9I	GGNCC	2 cut(s)	465, 1080
AsuC2I	CCSGG	3 cut(s)	485, 486, 1078
AsuHPI	GGTGA	4 cut(s)	224, 569, 580, 1147
AvaI	CYCGRG	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	1080
BanII	GRGCYC	1 cut(s)	662
BarI	GAAGNNNNNNTAC	2 cut(s)	635, 667
BbsI	GAAGAC	1 cut(s)	771
BbvI	GCAGC	5 cut(s)	107, 278, 525, 838, 1012
BccI	CCATC	2 cut(s)	26, 1026
BciVI	GTATCC	1 cut(s)	922
BclI	TGATCA	2 cut(s)	475, 574
BcnI	CCSGG	3 cut(s)	485, 486, 1078
BcoDI	GTCTC	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	907
BfuI	GTATCC	1 cut(s)	922
BglII	AGATCT	1 cut(s)	903
BisI	GCNGC	6 cut(s)	96, 267, 539, 827, 1026, 1135
BlpI	GCTNAGC	1 cut(s)	542
BlsI	GCNGC	6 cut(s)	97, 268, 540, 828, 1027, 1136
Bme1390I	CCNGG	3 cut(s)	485, 486, 1078
Bme18I	GGWCC	1 cut(s)	1080
BmeT110I	CYCGRG	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	465, 1080
BmiI	GGNNCC	2 cut(s)	466, 1081
BmrFI	CCNGG	3 cut(s)	485, 486, 1078
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	949, 1063
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	771
Bpu1102I	GCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	3 cut(s)	266, 851, 1084
BpuMI	CCSGG	3 cut(s)	485, 486, 1078
BsaAI	YACGTR	1 cut(s)	1161
BsaBI	GATNNNNATC	1 cut(s)	1018
BsaJI	CCNNGG	2 cut(s)	484, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
Bse1I	ACTGG	4 cut(s)	359, 466, 468, 1051
Bse8I	GATNNNNATC	1 cut(s)	1018
BseDI	CCNNGG	2 cut(s)	484, 684
BseGI	GGATG	4 cut(s)	204, 856, 1037, 1114
BseJI	GATNNNNATC	1 cut(s)	1018
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseNI	ACTGG	4 cut(s)	359, 466, 468, 1051
BseRI	GAGGAG	2 cut(s)	245, 854
BseXI	GCAGC	5 cut(s)	107, 278, 525, 838, 1012
Bsh1236I	CGCG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	467, 945, 1134
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	2 cut(s)	485, 1077
BslFI	GGGAC	3 cut(s)	467, 967, 1093
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	3 cut(s)	467, 967, 1093
BsnI	GGCC	3 cut(s)	467, 945, 1134
BsoBI	CYCGRG	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp143I	GATC	5 cut(s)	84, 456, 475, 574, 903
Bsp1720I	GCTNAGC	1 cut(s)	542
BspACI	CCGC	1 cut(s)	1135
BspANI	GGCC	3 cut(s)	467, 945, 1134
BspFNI	CGCG	1 cut(s)	597
BspLI	GGNNCC	2 cut(s)	466, 1081
BspMAI	CTGCAG	1 cut(s)	911
BspPI	GGATC	2 cut(s)	92, 464
BsrI	ACTGG	4 cut(s)	359, 466, 468, 1051
BssECI	CCNNGG	2 cut(s)	484, 684
BssMI	GATC	5 cut(s)	84, 456, 475, 574, 903
BssT1I	CCWWGG	1 cut(s)	684
Bst4CI	ACNGT	4 cut(s)	72, 553, 1084, 1103
Bst6I	CTCTTC	2 cut(s)	554, 894
BstBAI	YACGTR	1 cut(s)	1161
BstC8I	GCNNGC	2 cut(s)	315, 491
BstDEI	CTNAG	1 cut(s)	542
BstF5I	GGATG	4 cut(s)	204, 856, 1037, 1114
BstFNI	CGCG	1 cut(s)	597
BstKTI	GATC	5 cut(s)	87, 459, 478, 577, 906
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	5 cut(s)	84, 456, 475, 574, 903
BstMWI	GCNNNNNNNGC	2 cut(s)	616, 832
BstNSI	RCATGY	1 cut(s)	1150
BstSCI	CCNGG	3 cut(s)	483, 484, 1076
BstSFI	CTRYAG	1 cut(s)	907
BstUI	CGCG	1 cut(s)	597
BstV1I	GCAGC	5 cut(s)	107, 278, 525, 838, 1012
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	1 cut(s)	903
BstYI	RGATCY	1 cut(s)	903
BsuI	GTATCC	1 cut(s)	922
BsuRI	GGCC	3 cut(s)	467, 945, 1134
BtgZI	GCGATG	1 cut(s)	1031
BtsCI	GGATG	4 cut(s)	204, 856, 1037, 1114
BtsI	GCAGTG	2 cut(s)	916, 1270
BtsIMutI	CAGTG	6 cut(s)	459, 475, 916, 1108, 1235, 1270
Cac8I	GCNNGC	2 cut(s)	315, 491
CaiI	CAGNNNCTG	1 cut(s)	1028
Cfr13I	GGNCC	2 cut(s)	465, 1080
Cfr9I	CCCGGG	1 cut(s)	484
Csp6I	GTAC	2 cut(s)	90, 1162
CspCI	CAANNNNNGTGG	2 cut(s)	1147, 1182
CviAII	CATG	8 cut(s)	238, 479, 760, 769, 999, 1004, 1147, 1250
CviQI	GTAC	2 cut(s)	90, 1162
DdeI	CTNAG	1 cut(s)	542
DpnI	GATC	5 cut(s)	86, 458, 477, 576, 905
DpnII	GATC	5 cut(s)	84, 456, 475, 574, 903
DraIII	CACNNNGTG	2 cut(s)	126, 1105
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	1132
Eam1104I	CTCTTC	2 cut(s)	554, 894
EarI	CTCTTC	2 cut(s)	554, 894
Eco130I	CCWWGG	1 cut(s)	684
Eco147I	AGGCCT	1 cut(s)	945
Eco24I	GRGCYC	1 cut(s)	662
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	1080
Eco88I	CYCGRG	1 cut(s)	484
EcoRI	GAATTC	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	684
EcoT38I	GRGCYC	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	8 cut(s)	241, 482, 763, 772, 1002, 1007, 1150, 1253
FaqI	GGGAC	3 cut(s)	467, 967, 1093
FatI	CATG	8 cut(s)	237, 478, 759, 768, 998, 1003, 1146, 1249
FbaI	TGATCA	2 cut(s)	475, 574
Fnu4HI	GCNGC	6 cut(s)	96, 267, 539, 827, 1026, 1135
FokI	GGATG	4 cut(s)	211, 863, 1044, 1121
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	6 cut(s)	96, 267, 539, 827, 1026, 1135
GluI	GCNGC	6 cut(s)	96, 267, 539, 827, 1026, 1135
HaeIII	GGCC	3 cut(s)	467, 945, 1134
HapII	CCGG	2 cut(s)	485, 1077
Hin1II	CATG	8 cut(s)	241, 482, 763, 772, 1002, 1007, 1150, 1253
HindIII	AAGCTT	3 cut(s)	617, 648, 747
HinfI	GANTC	4 cut(s)	583, 866, 881, 1019
HpaII	CCGG	2 cut(s)	485, 1077
HphI	GGTGA	4 cut(s)	224, 569, 580, 1147
Hpy188I	TCNGA	7 cut(s)	43, 132, 160, 179, 664, 886, 974
Hpy188III	TCNNGA	7 cut(s)	29, 257, 277, 340, 370, 640, 1063
HpyAV	CCTTC	3 cut(s)	165, 637, 691
HpyCH4III	ACNGT	4 cut(s)	72, 553, 1084, 1103
HpyCH4IV	ACGT	1 cut(s)	1160
HpyCH4V	TGCA	6 cut(s)	385, 826, 875, 909, 1087, 1263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	616, 832
HpyF3I	CTNAG	1 cut(s)	542
HpySE526I	ACGT	1 cut(s)	1160
Hsp92II	CATG	8 cut(s)	241, 482, 763, 772, 1002, 1007, 1150, 1253
Ksp22I	TGATCA	2 cut(s)	475, 574
Kzo9I	GATC	5 cut(s)	84, 456, 475, 574, 903
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	5 cut(s)	107, 278, 525, 838, 1012
LweI	GCATC	2 cut(s)	949, 1063
MaeII	ACGT	1 cut(s)	1160
MaeIII	GTNAC	5 cut(s)	277, 568, 722, 755, 1035
MalI	GATC	5 cut(s)	86, 458, 477, 576, 905
MboI	GATC	5 cut(s)	84, 456, 475, 574, 903
MboII	GAAGA	5 cut(s)	17, 571, 748, 776, 911
MfeI	CAATTG	1 cut(s)	79
MflI	RGATCY	1 cut(s)	903
MhlI	GDGCHC	1 cut(s)	662
MlyI	GAGTC	1 cut(s)	577
MseI	TTAA	3 cut(s)	140, 414, 512
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	485, 1077
MspR9I	CCNGG	3 cut(s)	485, 486, 1078
MunI	CAATTG	1 cut(s)	79
MvnI	CGCG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	616, 832
NciI	CCSGG	3 cut(s)	485, 486, 1078
NdeII	GATC	5 cut(s)	84, 456, 475, 574, 903
NlaIII	CATG	8 cut(s)	241, 482, 763, 772, 1002, 1007, 1150, 1253
NlaIV	GGNNCC	2 cut(s)	466, 1081
NmuCI	GTSAC	3 cut(s)	277, 568, 755
NspI	RCATGY	1 cut(s)	1150
PceI	AGGCCT	1 cut(s)	945
PfeI	GAWTC	3 cut(s)	866, 881, 1019
PkrI	GCNGC	6 cut(s)	97, 268, 540, 828, 1027, 1136
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Ppu21I	YACGTR	1 cut(s)	1161
PspN4I	GGNNCC	2 cut(s)	466, 1081
PspPI	GGNCC	2 cut(s)	465, 1080
PstI	CTGCAG	1 cut(s)	911
PstNI	CAGNNNCTG	1 cut(s)	1028
PsuI	RGATCY	1 cut(s)	903
PvuII	CAGCTG	1 cut(s)	1025
RsaI	GTAC	2 cut(s)	91, 1163
RsaNI	GTAC	2 cut(s)	90, 1162
SaqAI	TTAA	3 cut(s)	140, 414, 512
SatI	GCNGC	6 cut(s)	96, 267, 539, 827, 1026, 1135
Sau3AI	GATC	5 cut(s)	84, 456, 475, 574, 903
Sau96I	GGNCC	2 cut(s)	465, 1080
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	3 cut(s)	485, 486, 1078
SduI	GDGCHC	1 cut(s)	662
SfaNI	GCATC	2 cut(s)	949, 1063
SfcI	CTRYAG	1 cut(s)	907
SinI	GGWCC	1 cut(s)	1080
SmaI	CCCGGG	1 cut(s)	486
SmlI	CTYRAG	3 cut(s)	245, 830, 1063
SmoI	CTYRAG	3 cut(s)	245, 830, 1063
SseBI	AGGCCT	1 cut(s)	945
SsiI	CCGC	1 cut(s)	1135
StuI	AGGCCT	1 cut(s)	945
StyD4I	CCNGG	3 cut(s)	483, 484, 1076
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	4 cut(s)	72, 553, 1084, 1103
TaiI	ACGT	1 cut(s)	1163
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	1 cut(s)	1137
TfiI	GAWTC	3 cut(s)	866, 881, 1019
Tru1I	TTAA	3 cut(s)	140, 414, 512
Tru9I	TTAA	3 cut(s)	140, 414, 512
TscAI	CASTG	6 cut(s)	466, 475, 916, 1108, 1235, 1270
TseFI	GTSAC	3 cut(s)	277, 568, 755
TseI	GCWGC	5 cut(s)	95, 266, 538, 826, 1025
Tsp45I	GTSAC	3 cut(s)	277, 568, 755
TspDTI	ATGAA	3 cut(s)	987, 1234, 1238
TspGWI	ACGGA	1 cut(s)	498
TspMI	CCCGGG	1 cut(s)	484
TspRI	CASTG	6 cut(s)	466, 475, 916, 1108, 1235, 1270
VpaK11BI	GGWCC	1 cut(s)	1080
XapI	RAATTY	4 cut(s)	37, 272, 984, 1124
XceI	RCATGY	1 cut(s)	1150
XmaI	CCCGGG	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.