Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009141

Physical Location & Seq

Genomic Coordinates Forward (+)

34321403 .. 34323485

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018714

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTTTACCAGAAGATACTGGTCCTCCATTGGTTGGTGGTCAAAGAATCAGAATCGGTTCATGACCACCAGTAAGCGTGTGCAGGACAGGAGCAAATTGAAGAGGGTTCATGATTTTGAAATTGTCACTGAGAAATGGAAGATAGCTTCCAAGGTGCTCTTTTTGATGGAATTACTAAAGAAGGAGCCGGAAATGATAATTCCAGTGAGGTCATTGGACAAGTTCCGAGCGCAGATTAGTCTTCCTAAGCCCCATAGGATGTCTGATTTCATTAGGAAATCACCGAAACTGTTTGAATTGTATAGGGATCGTAGGGGAGTTTTATGGTGTGGGATGACTGAGCAAGCTGAGGAGTTGGTAGAGGAGGAGGATACGTTACTTAAGCAGCATCAAGATAAGGCTGCTGAGTATGTTACTCGTTTTCTTATGATGTCTGTTGATAAGCGGCTTCGAGTTGACAAGATTGCTCATTACAGGAGAGACTTTGCTCTTCCAAATGATTTTAGGACTACCTGGGTGCACAAGTATCCCCAACACTTTAGGCTGGTAAGGGATAATGAGGATATCGAGTACTTGGAACTTGTTGCTTGGAATCCTGCTTGGGCTATAATAGAGTTGGAGAAGAAGACAATGGGGATTACTGATGCCGGTGCTCATACCCCTGGCTTGCTTTCACTCTCGGTTGCTTTGAAGTTCCCTCCCAATTACAAGAAGAATACCAAGGGACTTAAAGCTGGGTCGAAAGAATTTGGCAAGAGGGCAGTGGCTATTATGCATGAGCTTCTTAGCTTTACTGTTGAGAAGAGATTAGTGACTGATCACCTCACTCACTTCAGACAGGAACTTGTGATGCCCCAAAAGCTTATGAGACTATTTTTGAAGCATTTTGGCATCTTCTATGTCTCGGAGAGAGGGAAGAGATTTAGTGTCTTCTTGACAGAAGCTTATGAAGGTTCAGAGCTCATTAAGAAGCGCCCTTTGGTTATTTGGAAGGAAAAAGTTCAGAGCCTTATCGGTTACAGAAGAAAGAAGAAGATTGAAACTTTTACTGACATGTCAGAAATGGAAGACAGTAAACATATAGGAGCAATTCTGAAAAAACAAAGGAAGTACCATGTCTTGCAAAAGCTATGCAAGGTATGCAAAGTTGAAGAAGATGAAGCTGATGATAAAGTTGAACCTTCAGATCCAAAGGATGATCCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

403

Amino Acids

47.81

Weight (kDa)

9.67

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PORR	PF11955	34 - 240	2.4e-51	Plant organelle RNA recognition domain
PORR	PF11955	236 - 342	5e-38	Plant organelle RNA recognition domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21970 AT5G21970
fragaria_vesca	FvH4_6g20760
malus_domestica	MD14G1152200.v1.1
prunus_persica	Prupe.5G147200_v2.0.a1
pyrus_communis	pycom06g12860 pycom14g12660
rosa_chinensis	RchiOBHm_Chr3g0476641 RchiOBHm_Chr3g0476651
rosa_laevigata	RLG00000018714 RLG00000023758
rosa_multiflora	Rmu_sc0008241.1_g000013
rosa_roxburghii	Rroxscaffold_2G00121200 Rroxscaffold_6G00405130
rosa_rugosa	Rorug03G0156200
rosa_samantha	Rh2AG301200 Rh2DG325400 Rh3AG206500 Rh3BG238900 Rh3CG232800 Rh3DG232800
rosa_wichuraiana	Rw3G018810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	33
AciI	CCGC	1 cut(s)	445
AclWI	GGATC	3 cut(s)	315, 1181, 1193
AcsI	RAATTY	1 cut(s)	746
AcuI	CTGAAG	2 cut(s)	817, 1167
AfaI	GTAC	2 cut(s)	572, 1112
AfiI	CCNNNNNNNGG	1 cut(s)	33
AflII	CTTAAG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	1053
AgsI	TTSAA	8 cut(s)	100, 119, 296, 691, 880, 1040, 1151, 1178
AjnI	CCWGG	2 cut(s)	512, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	962, 994
Alw21I	GWGCWC	4 cut(s)	159, 522, 655, 963
Alw26I	GTCTC	3 cut(s)	474, 862, 907
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	3 cut(s)	315, 1181, 1193
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	385, 401
ApoI	RAATTY	1 cut(s)	746
Asp700I	GAANNNNTTC	2 cut(s)	56, 999
AspLEI	GCGC	2 cut(s)	232, 975
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	273, 812
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	963
BbsI	GAAGAC	4 cut(s)	233, 632, 922, 1074
Bbv12I	GWGCWC	4 cut(s)	159, 522, 655, 963
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	388, 397
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	514, 663
BciVI	GTATCC	2 cut(s)	364, 537
BclI	TGATCA	1 cut(s)	817
BcoDI	GTCTC	3 cut(s)	474, 862, 907
BfoI	RGCGCY	1 cut(s)	976
BfrI	CTTAAG	1 cut(s)	380
BfuI	GTATCC	2 cut(s)	364, 537
BisI	GCNGC	3 cut(s)	386, 402, 446
BlsI	GCNGC	3 cut(s)	387, 403, 447
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	2 cut(s)	514, 663
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	514, 663
BmsI	GCATC	4 cut(s)	397, 634, 840, 900
BpiI	GAAGAC	4 cut(s)	233, 632, 922, 1074
Bpu10I	CCTNAGC	2 cut(s)	246, 348
BsaJI	CCNNGG	4 cut(s)	150, 513, 661, 720
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	3 cut(s)	23, 69, 203
BseBI	CCWGG	2 cut(s)	514, 663
BseDI	CCNNGG	4 cut(s)	150, 513, 661, 720
BseGI	GGATG	3 cut(s)	264, 339, 1201
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	4 cut(s)	120, 330, 339, 396
BseNI	ACTGG	3 cut(s)	23, 69, 203
BseRI	GAGGAG	3 cut(s)	365, 377, 380
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	388, 397
BseYI	CCCAGC	1 cut(s)	734
BsgI	GTGCAG	1 cut(s)	101
BsiHKAI	GWGCWC	4 cut(s)	159, 522, 655, 963
BsiSI	CCGG	2 cut(s)	188, 648
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	3 cut(s)	474, 862, 907
BsmFI	GGGAC	1 cut(s)	738
Bsp1286I	GDGCHC	4 cut(s)	159, 522, 655, 963
Bsp143I	GATC	4 cut(s)	307, 817, 1186, 1198
BspACI	CCGC	1 cut(s)	445
BspCNI	CTCAG	4 cut(s)	121, 331, 340, 397
BspHI	TCATGA	2 cut(s)	60, 109
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	3 cut(s)	315, 1181, 1193
BspQI	GCTCTTC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	3 cut(s)	23, 69, 203
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	4 cut(s)	150, 513, 661, 720
BssMI	GATC	4 cut(s)	307, 817, 1186, 1198
BssT1I	CCWWGG	2 cut(s)	150, 720
Bst2UI	CCWGG	2 cut(s)	514, 663
Bst4CI	ACNGT	3 cut(s)	291, 796, 1073
Bst6I	CTCTTC	4 cut(s)	95, 495, 797, 911
BstAFI	CTTAAG	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	1140
BstC8I	GCNNGC	2 cut(s)	345, 668
BstDEI	CTNAG	6 cut(s)	129, 246, 339, 348, 405, 785
BstF5I	GGATG	3 cut(s)	264, 339, 1201
BstH2I	RGCGCY	1 cut(s)	976
BstHHI	GCGC	2 cut(s)	232, 975
BstKTI	GATC	4 cut(s)	310, 820, 1189, 1201
BstMAI	GTCTC	3 cut(s)	474, 862, 907
BstMBI	GATC	4 cut(s)	307, 817, 1186, 1198
BstMWI	GCNNNNNNNGC	2 cut(s)	859, 1140
BstNI	CCWGG	2 cut(s)	514, 663
BstNSI	RCATGY	1 cut(s)	1057
BstSCI	CCNGG	2 cut(s)	512, 661
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	2 cut(s)	388, 397
BstV2I	GAAGAC	4 cut(s)	233, 632, 922, 1074
BstX2I	RGATCY	1 cut(s)	1186
BstYI	RGATCY	1 cut(s)	1186
BsuI	GTATCC	2 cut(s)	364, 537
BtsCI	GGATG	3 cut(s)	264, 339, 1201
BtsI	GCAGTG	1 cut(s)	768
BtsIMutI	CAGTG	3 cut(s)	126, 210, 768
Cac8I	GCNNGC	2 cut(s)	345, 668
CciI	TCATGA	2 cut(s)	60, 109
CfoI	GCGC	2 cut(s)	232, 975
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	571, 1111
CviAII	CATG	5 cut(s)	61, 110, 776, 1054, 1115
CviQI	GTAC	2 cut(s)	571, 1111
DdeI	CTNAG	6 cut(s)	129, 246, 339, 348, 405, 785
DpnI	GATC	4 cut(s)	309, 819, 1188, 1200
DpnII	GATC	4 cut(s)	307, 817, 1186, 1198
Eam1104I	CTCTTC	4 cut(s)	95, 495, 797, 911
EarI	CTCTTC	4 cut(s)	95, 495, 797, 911
Ecl136II	GAGCTC	1 cut(s)	961
Eco130I	CCWWGG	2 cut(s)	150, 720
Eco24I	GRGCYC	1 cut(s)	963
Eco32I	GATATC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	961
Eco57I	CTGAAG	2 cut(s)	817, 1167
EcoICRI	GAGCTC	1 cut(s)	961
EcoRII	CCWGG	2 cut(s)	512, 661
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	150, 720
EcoT22I	ATGCAT	1 cut(s)	777
EcoT38I	GRGCYC	1 cut(s)	963
ErhI	CCWWGG	2 cut(s)	150, 720
FaeI	CATG	5 cut(s)	64, 113, 779, 1057, 1118
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	5 cut(s)	60, 109, 775, 1053, 1114
FbaI	TGATCA	1 cut(s)	817
Fnu4HI	GCNGC	3 cut(s)	386, 402, 446
FokI	GGATG	2 cut(s)	271, 346
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	3 cut(s)	386, 402, 446
GlaI	GCGC	2 cut(s)	231, 974
GluI	GCNGC	3 cut(s)	386, 402, 446
GsaI	CCCAGC	1 cut(s)	738
HaeII	RGCGCY	1 cut(s)	976
HapII	CCGG	2 cut(s)	188, 648
HhaI	GCGC	2 cut(s)	232, 975
Hin1II	CATG	5 cut(s)	64, 113, 779, 1057, 1118
Hin6I	GCGC	2 cut(s)	230, 973
HinP1I	GCGC	2 cut(s)	230, 973
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	2 cut(s)	860, 942
HinfI	GANTC	3 cut(s)	46, 52, 592
HpaII	CCGG	2 cut(s)	188, 648
HphI	GGTGA	2 cut(s)	273, 812
Hpy166II	GTNNAC	4 cut(s)	6, 457, 520, 1076
Hpy188III	TCNNGA	4 cut(s)	61, 110, 392, 934
Hpy8I	GTNNAC	4 cut(s)	6, 457, 520, 1076
HpyAV	CCTTC	4 cut(s)	175, 944, 985, 1191
HpyCH4III	ACNGT	3 cut(s)	291, 796, 1073
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	6 cut(s)	82, 520, 775, 1123, 1134, 1143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	859, 1140
HpyF3I	CTNAG	6 cut(s)	129, 246, 339, 348, 405, 785
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	5 cut(s)	64, 113, 779, 1057, 1118
HspAI	GCGC	2 cut(s)	230, 973
Ksp22I	TGATCA	1 cut(s)	817
Kzo9I	GATC	4 cut(s)	307, 817, 1186, 1198
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	3 cut(s)	90, 184, 1085
Lsp1109I	GCAGC	2 cut(s)	388, 397
LweI	GCATC	4 cut(s)	397, 634, 840, 900
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	5 cut(s)	124, 375, 412, 811, 1016
MalI	GATC	4 cut(s)	309, 819, 1188, 1200
MboI	GATC	4 cut(s)	307, 817, 1186, 1198
MflI	RGATCY	1 cut(s)	1186
MhlI	GDGCHC	4 cut(s)	159, 522, 655, 963
MluCI	AATT	8 cut(s)	95, 120, 170, 198, 296, 703, 746, 1089
MmeI	TCCRAC	1 cut(s)	597
Mph1103I	ATGCAT	1 cut(s)	777
MroXI	GAANNNNTTC	2 cut(s)	56, 999
MseI	TTAA	4 cut(s)	381, 729, 966, 1207
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	2 cut(s)	188, 648
MspR9I	CCNGG	2 cut(s)	514, 663
MvaI	CCWGG	2 cut(s)	514, 663
MwoI	GCNNNNNNNGC	2 cut(s)	859, 1140
NdeII	GATC	4 cut(s)	307, 817, 1186, 1198
NlaIII	CATG	5 cut(s)	64, 113, 779, 1057, 1118
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	124, 811
NsiI	ATGCAT	1 cut(s)	777
NspI	RCATGY	1 cut(s)	1057
PagI	TCATGA	2 cut(s)	60, 109
PciI	ACATGT	1 cut(s)	1053
PciSI	GCTCTTC	1 cut(s)	495
PdmI	GAANNNNTTC	2 cut(s)	56, 999
PfeI	GAWTC	3 cut(s)	46, 52, 592
PflMI	CCANNNNNTGG	1 cut(s)	33
PkrI	GCNGC	3 cut(s)	387, 403, 447
PscI	ACATGT	1 cut(s)	1053
Psp124BI	GAGCTC	1 cut(s)	963
Psp6I	CCWGG	2 cut(s)	512, 661
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	2 cut(s)	512, 661
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	1186
RsaI	GTAC	2 cut(s)	572, 1112
RsaNI	GTAC	2 cut(s)	571, 1111
SacI	GAGCTC	1 cut(s)	963
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	381, 729, 966, 1207
SatI	GCNGC	3 cut(s)	386, 402, 446
Sau3AI	GATC	4 cut(s)	307, 817, 1186, 1198
Sau96I	GGNCC	1 cut(s)	21
ScaI	AGTACT	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	514, 663
SduI	GDGCHC	4 cut(s)	159, 522, 655, 963
SfaNI	GCATC	4 cut(s)	397, 634, 840, 900
SinI	GGWCC	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	8 cut(s)	95, 120, 170, 198, 296, 703, 746, 1089
SsiI	CCGC	1 cut(s)	445
SstI	GAGCTC	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	512, 661
StyI	CCWWGG	2 cut(s)	150, 720
TaaI	ACNGT	3 cut(s)	291, 796, 1073
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	3 cut(s)	451, 567, 740
TasI	AATT	8 cut(s)	95, 120, 170, 198, 296, 703, 746, 1089
TatI	WGTACW	1 cut(s)	570
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	46, 52, 592
Tru1I	TTAA	4 cut(s)	381, 729, 966, 1207
Tru9I	TTAA	4 cut(s)	381, 729, 966, 1207
TscAI	CASTG	3 cut(s)	133, 210, 768
TseFI	GTSAC	2 cut(s)	124, 811
TseI	GCWGC	2 cut(s)	385, 401
Tsp45I	GTSAC	2 cut(s)	124, 811
TspDTI	ATGAA	5 cut(s)	49, 98, 259, 963, 1173
TspRI	CASTG	3 cut(s)	133, 210, 768
Van91I	CCANNNNNTGG	1 cut(s)	33
Vha464I	CTTAAG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	746
XceI	RCATGY	1 cut(s)	1057
XmnI	GAANNNNTTC	2 cut(s)	56, 999
ZrmI	AGTACT	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.