Rw3G018810

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009141
Physical Location & Seq
Forward (+)
21081893 .. 21083172
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018810.1

Sequence Viewer

Length: 1245 bp
ATGTTTGCGAGGAGATGCTGCTCCTCCGTTGGTTGGTGGTCGAAAAATCAGAAGCGGCTCATGACCACCAGTAAGCGTGTGCAGGACAGGAGCAAACTGAAGAGGGTTCATGATCTTGAGATTGTCACTGAGAAATGGAAGATAGCCTCCAAGGTGCTTTTTTTGATGGAATTACTAAAGAAGGAGCCGGAAATGATAATTCCGGTGAGGTCATTGGACAAGTTCCGGGCGCAGATTAGTCTTCCTAAGCCCCATAGGATGTCTGATTTCATTAGGAAATCGCCGAAACTGTTTGAATTGTATAGGGATCCTGAGGAGTTGGTAGAGGAGGAGGATAGGTTACTTGAGCAGCGTCAAGATAAGGCTGCTGAGTATGTTACTCGTTTTCTTATGATGTCTGTTGATAAGCGGCTTCGAGTTGACAAGATTGCTCATTATAGGAGAGACTTTGCGCTTCCAAATGATTTTAGGACTACCTGGGTGCACAAGTATCCCCAACACTTTAGGCTGGTACGGGATAATGAGGATATTGAGTACTTGGAACTTGTTACTTGGAATCCTGCTTGGGCTATAACGGAGCTGGAGAAGAAGACAATGGGGGTTACTGACGCCGGTGCTTATACCCCTGGCTTGCTTTCACTCTCGTTTCCTTTGAAGTTCCCTCCCAATTACAAGAAGAGAGTGTACAAATATCGGGGAGCGCTTGATCATTTTCAGAAAAGGTCTTATTTGTCACCCTATGCAGATGCCGGGGGACTTAAAGCTGGGTCGAAAGAATTTGACAAGAGGGCAGTGGCTATTATGCATGAGCTTCTCAGCTTTACTGTTGAGAAGAGATTGGTGACTGATCACCTCACTCACTTCAGACAGGAACTTGTGATGCCCCAAAAGCTTATGAGACTATTTCTGAAGCATTTTGGCATCTTCTATGTCTCGGAGAGAGGGAAGAGATTTAGTGTCTTCTTGACAGAAGCTTATGAAGGTTCAGAGCTCATTGAGAAGTGCCCTTTGGTTATTTGGAAGGAAAAAGTTCAGAGCCTAATTGGTTACAGAGGAAAGAAGAAGATTGAAACTTTTACTGACATGTCAGACATGGAAGACAGTGGTTTATATAGGAGCAATTCTGAAAGTGAAAGTGATTCTGAAGAAGAGAGCATTCACTTGGAGGATAACTCACATACAGATAATTCTGAAATGGAGATTGACGAGGTTTTCAGTGCTTACGAGGACTCTAAAACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

414

Amino Acids

48.95

Weight (kDa)

8.75

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 34 - 350 1.2e-98 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 55, 409
AclWI GGATC 2 cut(s) 302, 315
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 4 cut(s) 119, 847, 929, 1164
AcyI GRCGYC 1 cut(s) 609
AfaI GTAC 3 cut(s) 513, 536, 686
AfeI AGCGCT 1 cut(s) 702
AfiI CCNNNNNNNGG 1 cut(s) 33
AflIII ACRYGT 1 cut(s) 1083
AgsI TTSAA 3 cut(s) 296, 655, 1070
AjnI CCWGG 2 cut(s) 476, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
AluBI AGCT 7 cut(s) 580, 764, 811, 819, 892, 974, 991
AluI AGCT 7 cut(s) 580, 764, 811, 819, 892, 974, 991
Alw21I GWGCWC 2 cut(s) 486, 993
Alw26I GTCTC 3 cut(s) 438, 892, 937
Alw44I GTGCAC 1 cut(s) 482
AlwI GGATC 2 cut(s) 302, 315
Aor51HI AGCGCT 1 cut(s) 702
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 3 cut(s) 18, 349, 365
ApoI RAATTY 1 cut(s) 776
Asp700I GAANNNNTTC 1 cut(s) 1029
AspLEI GCGC 3 cut(s) 232, 454, 703
AsuC2I CCSGG 2 cut(s) 227, 751
AsuHPI GGTGA 4 cut(s) 217, 726, 842, 853
AxyI CCTNAGG 1 cut(s) 312
BaeGI GKGCMC 2 cut(s) 486, 1007
BamHI GGATCC 1 cut(s) 307
BanII GRGCYC 1 cut(s) 993
BarI GAAGNNNNNNTAC 2 cut(s) 668, 700
BbsI GAAGAC 4 cut(s) 233, 596, 952, 1104
Bbv12I GWGCWC 2 cut(s) 486, 993
BbvI GCAGC 3 cut(s) 5, 352, 361
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 478, 627
BciVI GTATCC 1 cut(s) 501
BclI TGATCA 2 cut(s) 706, 847
BcnI CCSGG 2 cut(s) 227, 751
BcoDI GTCTC 3 cut(s) 438, 892, 937
BfoI RGCGCY 1 cut(s) 704
BfuI GTATCC 1 cut(s) 501
BisI GCNGC 5 cut(s) 19, 56, 350, 366, 410
BlsI GCNGC 5 cut(s) 20, 57, 351, 367, 411
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 4 cut(s) 227, 478, 627, 751
BmiI GGNNCC 2 cut(s) 186, 309
BmrFI CCNGG 4 cut(s) 227, 478, 627, 751
BmsI GCATC 4 cut(s) 5, 736, 870, 930
BpiI GAAGAC 4 cut(s) 233, 596, 952, 1104
BplI GAGNNNNNCTC 2 cut(s) 1157, 1189
BpmI CTGGAG 1 cut(s) 602
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 2 cut(s) 137, 365
BpuMI CCSGG 2 cut(s) 227, 751
BsaHI GRCGYC 1 cut(s) 609
BsaJI CCNNGG 4 cut(s) 150, 477, 625, 750
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 611
Bse1I ACTGG 1 cut(s) 69
Bse21I CCTNAGG 1 cut(s) 312
BseBI CCWGG 2 cut(s) 478, 627
BseDI CCNNGG 4 cut(s) 150, 477, 625, 750
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 4 cut(s) 120, 303, 360, 829
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 5 cut(s) 13, 25, 329, 341, 344
BseSI GKGCMC 2 cut(s) 486, 1007
BseXI GCAGC 3 cut(s) 5, 352, 361
BseYI CCCAGC 1 cut(s) 764
BsgI GTGCAG 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 486, 993
BsiSI CCGG 5 cut(s) 188, 203, 226, 612, 750
BslFI GGGAC 1 cut(s) 768
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 3 cut(s) 438, 892, 937
BsmFI GGGAC 1 cut(s) 768
BsmI GAATGC 1 cut(s) 1155
Bsp1286I GDGCHC 3 cut(s) 486, 993, 1007
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 4 cut(s) 112, 307, 706, 847
BspACI CCGC 2 cut(s) 55, 409
BspCNI CTCAG 4 cut(s) 121, 304, 361, 828
BspHI TCATGA 2 cut(s) 60, 109
BspLI GGNNCC 2 cut(s) 186, 309
BspPI GGATC 2 cut(s) 302, 315
BsrFI RCCGGY 1 cut(s) 611
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 611
BssECI CCNNGG 4 cut(s) 150, 477, 625, 750
BssMI GATC 4 cut(s) 112, 307, 706, 847
BssNI GRCGYC 1 cut(s) 609
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 2 cut(s) 478, 627
Bst4CI ACNGT 3 cut(s) 291, 826, 1103
Bst6I CTCTTC 5 cut(s) 95, 671, 827, 941, 1143
BstACI GRCGYC 1 cut(s) 609
BstAUI TGTACA 1 cut(s) 684
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 5 cut(s) 129, 246, 312, 369, 815
BstF5I GGATG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 704
BstHHI GCGC 3 cut(s) 232, 454, 703
BstKTI GATC 4 cut(s) 115, 310, 709, 850
BstMAI GTCTC 3 cut(s) 438, 892, 937
BstMBI GATC 4 cut(s) 112, 307, 706, 847
BstMWI GCNNNNNNNGC 1 cut(s) 889
BstNI CCWGG 2 cut(s) 478, 627
BstNSI RCATGY 1 cut(s) 1087
BstSCI CCNGG 4 cut(s) 225, 476, 625, 749
BstSLI GKGCMC 2 cut(s) 486, 1007
BstV1I GCAGC 3 cut(s) 5, 352, 361
BstV2I GAAGAC 4 cut(s) 233, 596, 952, 1104
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 312
BsuI GTATCC 1 cut(s) 501
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 4 cut(s) 126, 798, 1108, 1222
Cac8I GCNNGC 1 cut(s) 632
CciI TCATGA 2 cut(s) 60, 109
CfoI GCGC 3 cut(s) 232, 454, 703
Cfr10I RCCGGY 1 cut(s) 611
CseI GACGC 2 cut(s) 341, 617
Csp6I GTAC 3 cut(s) 512, 535, 685
CviAII CATG 5 cut(s) 61, 110, 806, 1084, 1093
CviQI GTAC 3 cut(s) 512, 535, 685
DdeI CTNAG 5 cut(s) 129, 246, 312, 369, 815
DpnI GATC 4 cut(s) 114, 309, 708, 849
DpnII GATC 4 cut(s) 112, 307, 706, 847
Eam1104I CTCTTC 5 cut(s) 95, 671, 827, 941, 1143
EarI CTCTTC 5 cut(s) 95, 671, 827, 941, 1143
Ecl136II GAGCTC 1 cut(s) 991
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 993
Eco47III AGCGCT 1 cut(s) 702
Eco53kI GAGCTC 1 cut(s) 991
Eco57I CTGAAG 4 cut(s) 119, 847, 929, 1164
Eco81I CCTNAGG 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 991
EcoRII CCWGG 2 cut(s) 476, 625
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 993
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 5 cut(s) 64, 113, 809, 1087, 1096
FaqI GGGAC 1 cut(s) 768
FatI CATG 5 cut(s) 60, 109, 805, 1083, 1092
FbaI TGATCA 2 cut(s) 706, 847
Fnu4HI GCNGC 5 cut(s) 19, 56, 350, 366, 410
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 993
Fsp4HI GCNGC 5 cut(s) 19, 56, 350, 366, 410
GlaI GCGC 3 cut(s) 231, 453, 702
GluI GCNGC 5 cut(s) 19, 56, 350, 366, 410
GsaI CCCAGC 1 cut(s) 768
GsuI CTGGAG 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 704
HapII CCGG 5 cut(s) 188, 203, 226, 612, 750
HgaI GACGC 2 cut(s) 341, 617
HhaI GCGC 3 cut(s) 232, 454, 703
Hin1I GRCGYC 1 cut(s) 609
Hin1II CATG 5 cut(s) 64, 113, 809, 1087, 1096
Hin6I GCGC 3 cut(s) 230, 452, 701
HinP1I GCGC 3 cut(s) 230, 452, 701
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 2 cut(s) 890, 972
HinfI GANTC 3 cut(s) 556, 1139, 1229
HpaII CCGG 5 cut(s) 188, 203, 226, 612, 750
HphI GGTGA 4 cut(s) 217, 726, 842, 853
Hpy166II GTNNAC 3 cut(s) 421, 484, 685
Hpy188III TCNNGA 6 cut(s) 61, 110, 116, 311, 356, 964
Hpy8I GTNNAC 3 cut(s) 421, 484, 685
HpyAV CCTTC 3 cut(s) 175, 974, 1015
HpyCH4III ACNGT 3 cut(s) 291, 826, 1103
HpyCH4V TGCA 4 cut(s) 82, 484, 743, 805
HpyF10VI GCNNNNNNNGC 1 cut(s) 889
HpyF3I CTNAG 5 cut(s) 129, 246, 312, 369, 815
Hsp92I GRCGYC 1 cut(s) 609
Hsp92II CATG 5 cut(s) 64, 113, 809, 1087, 1096
HspAI GCGC 3 cut(s) 230, 452, 701
Ksp22I TGATCA 2 cut(s) 706, 847
Kzo9I GATC 4 cut(s) 112, 307, 706, 847
LmnI GCTCC 6 cut(s) 26, 90, 184, 577, 698, 1116
Lsp1109I GCAGC 3 cut(s) 5, 352, 361
LweI GCATC 4 cut(s) 5, 736, 870, 930
MaeIII GTNAC 8 cut(s) 124, 339, 376, 547, 601, 732, 841, 1046
MalI GATC 4 cut(s) 114, 309, 708, 849
MboI GATC 4 cut(s) 112, 307, 706, 847
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 3 cut(s) 486, 993, 1007
MluCI AATT 8 cut(s) 170, 198, 296, 667, 776, 1041, 1120, 1186
MlyI GAGTC 1 cut(s) 1223
Mph1103I ATGCAT 1 cut(s) 807
MroXI GAANNNNTTC 1 cut(s) 1029
MseI TTAA 2 cut(s) 759, 1243
MspI CCGG 5 cut(s) 188, 203, 226, 612, 750
MspR9I CCNGG 4 cut(s) 227, 478, 627, 751
Mva1269I GAATGC 1 cut(s) 1155
MvaI CCWGG 2 cut(s) 478, 627
MwoI GCNNNNNNNGC 1 cut(s) 889
NciI CCSGG 2 cut(s) 227, 751
NdeII GATC 4 cut(s) 112, 307, 706, 847
NlaIII CATG 5 cut(s) 64, 113, 809, 1087, 1096
NlaIV GGNNCC 2 cut(s) 186, 309
NmuCI GTSAC 3 cut(s) 124, 732, 841
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 1 cut(s) 1087
PagI TCATGA 2 cut(s) 60, 109
PciI ACATGT 1 cut(s) 1083
PctI GAATGC 1 cut(s) 1155
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 2 cut(s) 556, 1139
PkrI GCNGC 5 cut(s) 20, 57, 351, 367, 411
PleI GAGTC 1 cut(s) 1223
PpsI GAGTC 1 cut(s) 1223
PscI ACATGT 1 cut(s) 1083
Psp124BI GAGCTC 1 cut(s) 993
Psp6I CCWGG 2 cut(s) 476, 625
PspFI CCCAGC 1 cut(s) 764
PspGI CCWGG 2 cut(s) 476, 625
PspN4I GGNNCC 2 cut(s) 186, 309
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 3 cut(s) 513, 536, 686
RsaNI GTAC 3 cut(s) 512, 535, 685
SacI GAGCTC 1 cut(s) 993
SaqAI TTAA 2 cut(s) 759, 1243
SatI GCNGC 5 cut(s) 19, 56, 350, 366, 410
Sau3AI GATC 4 cut(s) 112, 307, 706, 847
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 1 cut(s) 1223
ScrFI CCNGG 4 cut(s) 227, 478, 627, 751
SduI GDGCHC 3 cut(s) 486, 993, 1007
SfaNI GCATC 4 cut(s) 5, 736, 870, 930
SgrAI CRCCGGYG 1 cut(s) 611
SmlI CTYRAG 2 cut(s) 116, 344
SmoI CTYRAG 2 cut(s) 116, 344
Sse9I AATT 8 cut(s) 170, 198, 296, 667, 776, 1041, 1120, 1186
SsiI CCGC 2 cut(s) 55, 409
SstI GAGCTC 1 cut(s) 993
StyD4I CCNGG 4 cut(s) 225, 476, 625, 749
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 291, 826, 1103
TaqI TCGA 3 cut(s) 41, 415, 770
TasI AATT 8 cut(s) 170, 198, 296, 667, 776, 1041, 1120, 1186
TatI WGTACW 2 cut(s) 534, 684
TauI GCSGC 2 cut(s) 58, 412
TfiI GAWTC 2 cut(s) 556, 1139
Tru1I TTAA 2 cut(s) 759, 1243
Tru9I TTAA 2 cut(s) 759, 1243
TscAI CASTG 4 cut(s) 133, 798, 1108, 1222
TseFI GTSAC 3 cut(s) 124, 732, 841
TseI GCWGC 3 cut(s) 18, 349, 365
Tsp45I GTSAC 3 cut(s) 124, 732, 841
TspDTI ATGAA 3 cut(s) 98, 259, 993
TspGWI ACGGA 2 cut(s) 16, 590
TspRI CASTG 4 cut(s) 133, 798, 1108, 1222
VneI GTGCAC 1 cut(s) 482
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 1087
XmnI GAANNNNTTC 1 cut(s) 1029
ZrmI AGTACT 1 cut(s) 536
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.