RLG00000023758

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009141
Physical Location & Seq
Reverse (-)
27898012 .. 27900087
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023758

Sequence Viewer

Length: 1362 bp
ATGTTTGTGAGGAGATGCTGCTCCTCCGTTGGTTGGTGGTCGAAGAATCAGAAGCGGTTCATGACCACCAGCAAGCGTGTGCAGGACAGGAGCAAACTGAAGAGGGTTCATGATCTTGAGATTGTTACTGAGAAATGGAAGATAGCCTCCAAGGTGCTCTTTTTGATGGAATTACTAAAGAAGGAGCCGGAAATGATAATTCCGGTGAGGTCATTGGACAAGTTCCGGGCGCAGATTAGTCTTCCTAAGCCCCATAGGATGTCTGATTTCATTAGGAAATCGCCGAAACTGTTTGAATTGTATAGGGATCGTAGGGGAGTTTTATGGTGTGGGATGACTGAGCAAGCTGAGGAGTTGGTAGAGGAGGAGGATAGGATACTTGAGCAGCATCAAGATAAGGCTGCTGAGTATGTTACTCGTTTTCTTATGATGTCCGTTGATAAGCGGCTTCGAGTTGACAAGATTGCTCATTATAGGAGAGACTTTGCTCTTCCAAATGATTTTAGGACTACCTGGGTGCACAAGTATCCCCAACACTTTAGGCTGGTAAGGGATAATGAGGATATCGAGTACTTGGAACTTGTTGCTTGGAATCCTGCTTGGGCTATAACGGAGTTGGAGAAGAAGACAATGGGGGTTACTGATGCCGGTGCTCATACCCCTGGCTTGCTTTCACTCTCGTTTCCTTTGAAGTTCCCTCCCAATTACAAGAAGAGAGTGTACAAATATCGGGGAGCGCTTGATCATTTTCAAAAAAGGTCTTATTTGTCACCGTATGCAGATGCTAGGGGACTTGAAGCTGGCTCGAAAGAGTTTGACAAGAGGGCAGTGGCTATTATGCATGAGCTTCTCAGCTTTACTGTTGAGAAGAGATTGGTGACTGATCACCTCACTCACTTCAGACAGGAACTTGTGATGCCCCAAAAGCTTATGAGACTATTTCTGAAGCATTTTGGGATCTTCTATGTCTCAGAGAGAGGGAAGAGATTTAGTGTCTTCTTGACAGAAGCTTATGAAGGTTCAGAGCTCATTGAGAAGTGCCCTTTGGTTATTTGGAAGGAGAAAGTTCAGAGCCTTATTGGTTACAGAGGAAAGAAGAAGATTGAAACTTTTACTGACATGTCAGAAATGGAAGACAGTGGTTTATATAGGAGCAATTCTGAAAGTGAGAGTGATTCTGAAGAAGAGAGCATTCACTTGGAGGATAACTCACAGACAGAAAATTCTGAAATGGAGATTGACGAGTTCAAAGATGTAGTGAAACCAAGGAAGTACCATGTCTTGCAAAAGCTATGCAAGGTATCCAAAGTTGAAGCAGATGACAAAGTTGAACCTTCAGACCCAAAGGATGATCCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

454

Amino Acids

53.65

Weight (kDa)

8.85

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 34 - 362 5.2e-108 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 55, 445
AclWI GGATC 3 cut(s) 315, 965, 1346
AcsI RAATTY 1 cut(s) 1222
AcuI CTGAAG 5 cut(s) 119, 883, 965, 1200, 1320
AfaI GTAC 3 cut(s) 572, 722, 1274
AfeI AGCGCT 1 cut(s) 738
AfiI CCNNNNNNNGG 1 cut(s) 33
AflIII ACRYGT 1 cut(s) 1119
AgsI TTSAA 8 cut(s) 296, 691, 752, 797, 1106, 1249, 1313, 1331
AjnI CCWGG 2 cut(s) 512, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 1028, 1060
AluBI AGCT 8 cut(s) 347, 800, 847, 855, 928, 1010, 1027, 1291
AluI AGCT 8 cut(s) 347, 800, 847, 855, 928, 1010, 1027, 1291
Alw21I GWGCWC 4 cut(s) 159, 522, 655, 1029
Alw26I GTCTC 3 cut(s) 474, 928, 973
Alw44I GTGCAC 1 cut(s) 518
AlwI GGATC 3 cut(s) 315, 965, 1346
Aor51HI AGCGCT 1 cut(s) 738
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 3 cut(s) 18, 385, 401
ApoI RAATTY 1 cut(s) 1222
Asp700I GAANNNNTTC 1 cut(s) 56
AspLEI GCGC 2 cut(s) 232, 739
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 4 cut(s) 217, 762, 878, 889
BaeGI GKGCMC 2 cut(s) 522, 1043
BanII GRGCYC 1 cut(s) 1029
BarI GAAGNNNNNNTAC 2 cut(s) 704, 736
BbsI GAAGAC 4 cut(s) 233, 632, 988, 1140
Bbv12I GWGCWC 4 cut(s) 159, 522, 655, 1029
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 5, 388, 397
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 514, 663
BciVI GTATCC 3 cut(s) 369, 537, 1312
BclI TGATCA 2 cut(s) 742, 883
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 3 cut(s) 474, 928, 973
BfaI CTAG 1 cut(s) 786
BfoI RGCGCY 1 cut(s) 740
BfuI GTATCC 3 cut(s) 369, 537, 1312
BisI GCNGC 4 cut(s) 19, 386, 402, 446
BlsI GCNGC 4 cut(s) 20, 387, 403, 447
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 3 cut(s) 227, 514, 663
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 3 cut(s) 227, 514, 663
BmsI GCATC 5 cut(s) 5, 397, 634, 772, 906
BpiI GAAGAC 4 cut(s) 233, 632, 988, 1140
BplI GAGNNNNNCTC 2 cut(s) 1193, 1225
Bpu10I CCTNAGC 2 cut(s) 246, 348
BpuEI CTTGAG 2 cut(s) 137, 401
BpuMI CCSGG 1 cut(s) 227
BsaJI CCNNGG 4 cut(s) 150, 513, 661, 1265
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 647
BseBI CCWGG 2 cut(s) 514, 663
BseDI CCNNGG 4 cut(s) 150, 513, 661, 1265
BseGI GGATG 3 cut(s) 264, 339, 1354
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 6 cut(s) 120, 330, 339, 396, 865, 984
BseRI GAGGAG 5 cut(s) 13, 25, 365, 377, 380
BseSI GKGCMC 2 cut(s) 522, 1043
BseXI GCAGC 3 cut(s) 5, 388, 397
BsgI GTGCAG 1 cut(s) 101
BsiHKAI GWGCWC 4 cut(s) 159, 522, 655, 1029
BsiSI CCGG 4 cut(s) 188, 203, 226, 648
BslFI GGGAC 1 cut(s) 804
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 3 cut(s) 474, 928, 973
BsmFI GGGAC 1 cut(s) 804
BsmI GAATGC 1 cut(s) 1191
Bsp1286I GDGCHC 5 cut(s) 159, 522, 655, 1029, 1043
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 6 cut(s) 112, 307, 742, 883, 957, 1351
BspACI CCGC 2 cut(s) 55, 445
BspCNI CTCAG 6 cut(s) 121, 331, 340, 397, 864, 983
BspHI TCATGA 2 cut(s) 60, 109
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 3 cut(s) 315, 965, 1346
BspQI GCTCTTC 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 647
BsrGI TGTACA 1 cut(s) 720
BssAI RCCGGY 1 cut(s) 647
BssECI CCNNGG 4 cut(s) 150, 513, 661, 1265
BssMI GATC 6 cut(s) 112, 307, 742, 883, 957, 1351
BssT1I CCWWGG 2 cut(s) 150, 1265
Bst2UI CCWGG 2 cut(s) 514, 663
Bst4CI ACNGT 4 cut(s) 291, 774, 862, 1139
Bst6I CTCTTC 6 cut(s) 95, 495, 707, 863, 977, 1179
BstAUI TGTACA 1 cut(s) 720
BstC8I GCNNGC 4 cut(s) 74, 345, 668, 802
BstDEI CTNAG 7 cut(s) 129, 246, 339, 348, 405, 851, 970
BstF5I GGATG 3 cut(s) 264, 339, 1354
BstH2I RGCGCY 1 cut(s) 740
BstHHI GCGC 2 cut(s) 232, 739
BstKTI GATC 6 cut(s) 115, 310, 745, 886, 960, 1354
BstMAI GTCTC 3 cut(s) 474, 928, 973
BstMBI GATC 6 cut(s) 112, 307, 742, 883, 957, 1351
BstMWI GCNNNNNNNGC 1 cut(s) 925
BstNI CCWGG 2 cut(s) 514, 663
BstNSI RCATGY 1 cut(s) 1123
BstSCI CCNGG 3 cut(s) 225, 512, 661
BstSLI GKGCMC 2 cut(s) 522, 1043
BstV1I GCAGC 3 cut(s) 5, 388, 397
BstV2I GAAGAC 4 cut(s) 233, 632, 988, 1140
BstX2I RGATCY 1 cut(s) 957
BstYI RGATCY 1 cut(s) 957
BsuI GTATCC 3 cut(s) 369, 537, 1312
BtsCI GGATG 3 cut(s) 264, 339, 1354
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 2 cut(s) 834, 1144
Cac8I GCNNGC 4 cut(s) 74, 345, 668, 802
CciI TCATGA 2 cut(s) 60, 109
CfoI GCGC 2 cut(s) 232, 739
Cfr10I RCCGGY 1 cut(s) 647
Csp6I GTAC 3 cut(s) 571, 721, 1273
CviAII CATG 5 cut(s) 61, 110, 842, 1120, 1277
CviQI GTAC 3 cut(s) 571, 721, 1273
DdeI CTNAG 7 cut(s) 129, 246, 339, 348, 405, 851, 970
DpnI GATC 6 cut(s) 114, 309, 744, 885, 959, 1353
DpnII GATC 6 cut(s) 112, 307, 742, 883, 957, 1351
Eam1104I CTCTTC 6 cut(s) 95, 495, 707, 863, 977, 1179
EarI CTCTTC 6 cut(s) 95, 495, 707, 863, 977, 1179
Ecl136II GAGCTC 1 cut(s) 1027
Eco130I CCWWGG 2 cut(s) 150, 1265
Eco24I GRGCYC 1 cut(s) 1029
Eco32I GATATC 1 cut(s) 565
Eco47III AGCGCT 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 1027
Eco57I CTGAAG 5 cut(s) 119, 883, 965, 1200, 1320
EcoICRI GAGCTC 1 cut(s) 1027
EcoRII CCWGG 2 cut(s) 512, 661
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 150, 1265
EcoT22I ATGCAT 1 cut(s) 843
EcoT38I GRGCYC 1 cut(s) 1029
ErhI CCWWGG 2 cut(s) 150, 1265
FaeI CATG 5 cut(s) 64, 113, 845, 1123, 1280
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 804
FatI CATG 5 cut(s) 60, 109, 841, 1119, 1276
FbaI TGATCA 2 cut(s) 742, 883
Fnu4HI GCNGC 4 cut(s) 19, 386, 402, 446
FokI GGATG 2 cut(s) 271, 346
FriOI GRGCYC 1 cut(s) 1029
Fsp4HI GCNGC 4 cut(s) 19, 386, 402, 446
FspBI CTAG 1 cut(s) 786
GlaI GCGC 2 cut(s) 231, 738
GluI GCNGC 4 cut(s) 19, 386, 402, 446
HaeII RGCGCY 1 cut(s) 740
HapII CCGG 4 cut(s) 188, 203, 226, 648
HhaI GCGC 2 cut(s) 232, 739
Hin1II CATG 5 cut(s) 64, 113, 845, 1123, 1280
Hin6I GCGC 2 cut(s) 230, 737
HinP1I GCGC 2 cut(s) 230, 737
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 2 cut(s) 926, 1008
HinfI GANTC 3 cut(s) 46, 592, 1175
HpaII CCGG 4 cut(s) 188, 203, 226, 648
HphI GGTGA 4 cut(s) 217, 762, 878, 889
Hpy166II GTNNAC 3 cut(s) 457, 520, 721
Hpy188III TCNNGA 5 cut(s) 61, 110, 116, 392, 1000
Hpy8I GTNNAC 3 cut(s) 457, 520, 721
HpyAV CCTTC 4 cut(s) 175, 1010, 1051, 1344
HpyCH4III ACNGT 4 cut(s) 291, 774, 862, 1139
HpyCH4V TGCA 6 cut(s) 82, 520, 779, 841, 1285, 1296
HpyF10VI GCNNNNNNNGC 1 cut(s) 925
HpyF3I CTNAG 7 cut(s) 129, 246, 339, 348, 405, 851, 970
Hsp92II CATG 5 cut(s) 64, 113, 845, 1123, 1280
HspAI GCGC 2 cut(s) 230, 737
Ksp22I TGATCA 2 cut(s) 742, 883
Kzo9I GATC 6 cut(s) 112, 307, 742, 883, 957, 1351
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 5 cut(s) 26, 90, 184, 734, 1152
Lsp1109I GCAGC 3 cut(s) 5, 388, 397
LweI GCATC 5 cut(s) 5, 397, 634, 772, 906
MaeI CTAG 1 cut(s) 786
MaeIII GTNAC 6 cut(s) 124, 412, 637, 768, 877, 1082
MalI GATC 6 cut(s) 114, 309, 744, 885, 959, 1353
MboI GATC 6 cut(s) 112, 307, 742, 883, 957, 1351
MflI RGATCY 1 cut(s) 957
MhlI GDGCHC 5 cut(s) 159, 522, 655, 1029, 1043
MluCI AATT 6 cut(s) 170, 198, 296, 703, 1156, 1222
MmeI TCCRAC 1 cut(s) 597
Mph1103I ATGCAT 1 cut(s) 843
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 1 cut(s) 1360
MspI CCGG 4 cut(s) 188, 203, 226, 648
MspR9I CCNGG 3 cut(s) 227, 514, 663
Mva1269I GAATGC 1 cut(s) 1191
MvaI CCWGG 2 cut(s) 514, 663
MwoI GCNNNNNNNGC 1 cut(s) 925
NciI CCSGG 1 cut(s) 227
NdeII GATC 6 cut(s) 112, 307, 742, 883, 957, 1351
NlaIII CATG 5 cut(s) 64, 113, 845, 1123, 1280
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 2 cut(s) 768, 877
NsiI ATGCAT 1 cut(s) 843
NspI RCATGY 1 cut(s) 1123
PagI TCATGA 2 cut(s) 60, 109
PciI ACATGT 1 cut(s) 1119
PciSI GCTCTTC 1 cut(s) 495
PctI GAATGC 1 cut(s) 1191
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 3 cut(s) 46, 592, 1175
PkrI GCNGC 4 cut(s) 20, 387, 403, 447
PscI ACATGT 1 cut(s) 1119
Psp124BI GAGCTC 1 cut(s) 1029
Psp6I CCWGG 2 cut(s) 512, 661
PspGI CCWGG 2 cut(s) 512, 661
PspN4I GGNNCC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 957
RsaI GTAC 3 cut(s) 572, 722, 1274
RsaNI GTAC 3 cut(s) 571, 721, 1273
SacI GAGCTC 1 cut(s) 1029
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 1 cut(s) 1360
SatI GCNGC 4 cut(s) 19, 386, 402, 446
Sau3AI GATC 6 cut(s) 112, 307, 742, 883, 957, 1351
ScaI AGTACT 1 cut(s) 572
ScrFI CCNGG 3 cut(s) 227, 514, 663
SduI GDGCHC 5 cut(s) 159, 522, 655, 1029, 1043
SfaNI GCATC 5 cut(s) 5, 397, 634, 772, 906
SmlI CTYRAG 2 cut(s) 116, 380
SmoI CTYRAG 2 cut(s) 116, 380
Sse9I AATT 6 cut(s) 170, 198, 296, 703, 1156, 1222
SsiI CCGC 2 cut(s) 55, 445
SspMI CTAG 1 cut(s) 786
SstI GAGCTC 1 cut(s) 1029
StyD4I CCNGG 3 cut(s) 225, 512, 661
StyI CCWWGG 2 cut(s) 150, 1265
TaaI ACNGT 4 cut(s) 291, 774, 862, 1139
TaqI TCGA 4 cut(s) 41, 451, 567, 806
TasI AATT 6 cut(s) 170, 198, 296, 703, 1156, 1222
TatI WGTACW 2 cut(s) 570, 720
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 3 cut(s) 46, 592, 1175
Tru1I TTAA 1 cut(s) 1360
Tru9I TTAA 1 cut(s) 1360
TscAI CASTG 2 cut(s) 834, 1144
TseFI GTSAC 2 cut(s) 768, 877
TseI GCWGC 3 cut(s) 18, 385, 401
Tsp45I GTSAC 2 cut(s) 768, 877
TspDTI ATGAA 4 cut(s) 49, 98, 259, 1029
TspGWI ACGGA 3 cut(s) 16, 424, 626
TspRI CASTG 2 cut(s) 834, 1144
VneI GTGCAC 1 cut(s) 518
XapI RAATTY 1 cut(s) 1222
XceI RCATGY 1 cut(s) 1123
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 1 cut(s) 786
ZrmI AGTACT 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.