Protein ROOT PRIMORDIUM DEFECTIVE
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G21970 AT5G21970 |
| fragaria_vesca | FvH4_6g20760 |
| malus_domestica | MD14G1152200.v1.1 |
| prunus_persica | Prupe.5G147200_v2.0.a1 |
| pyrus_communis | pycom06g12860 pycom14g12660 |
| rosa_chinensis | RchiOBHm_Chr3g0476641 RchiOBHm_Chr3g0476651 |
| rosa_laevigata | RLG00000018714 RLG00000023758 |
| rosa_multiflora | Rmu_sc0008241.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00121200 Rroxscaffold_6G00405130 |
| rosa_rugosa | Rorug03G0156200 |
| rosa_samantha | Rh2AG301200 Rh2DG325400 Rh3AG206500 Rh3BG238900 Rh3CG232800 Rh3DG232800 |
| rosa_wichuraiana | Rw3G018810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 55 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 33 |
| AgsI | TTSAA | 1 cut(s) | 100 |
| ApeKI | GCWGC | 1 cut(s) | 18 |
| AspS9I | GGNCC | 1 cut(s) | 154 |
| AvaII | GGWCC | 1 cut(s) | 154 |
| BbvI | GCAGC | 1 cut(s) | 5 |
| BisI | GCNGC | 2 cut(s) | 19, 56 |
| BlsI | GCNGC | 2 cut(s) | 20, 57 |
| Bme18I | GGWCC | 1 cut(s) | 154 |
| BmgT120I | GGNCC | 1 cut(s) | 154 |
| BmsI | GCATC | 1 cut(s) | 5 |
| BpuEI | CTTGAG | 1 cut(s) | 137 |
| BsaJI | CCNNGG | 1 cut(s) | 150 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 33 |
| Bse1I | ACTGG | 1 cut(s) | 69 |
| BseDI | CCNNGG | 1 cut(s) | 150 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 33 |
| BseMII | CTCAG | 1 cut(s) | 120 |
| BseNI | ACTGG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 2 cut(s) | 13, 25 |
| BseXI | GCAGC | 1 cut(s) | 5 |
| BsgI | GTGCAG | 1 cut(s) | 101 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 33 |
| Bsp143I | GATC | 1 cut(s) | 112 |
| BspACI | CCGC | 1 cut(s) | 55 |
| BspCNI | CTCAG | 1 cut(s) | 121 |
| BspHI | TCATGA | 2 cut(s) | 60, 109 |
| BsrI | ACTGG | 1 cut(s) | 69 |
| BssECI | CCNNGG | 1 cut(s) | 150 |
| BssMI | GATC | 1 cut(s) | 112 |
| BssT1I | CCWWGG | 1 cut(s) | 150 |
| Bst6I | CTCTTC | 1 cut(s) | 95 |
| BstDEI | CTNAG | 1 cut(s) | 129 |
| BstKTI | GATC | 1 cut(s) | 115 |
| BstMBI | GATC | 1 cut(s) | 112 |
| BstV1I | GCAGC | 1 cut(s) | 5 |
| BtsIMutI | CAGTG | 1 cut(s) | 126 |
| CciI | TCATGA | 2 cut(s) | 60, 109 |
| Cfr13I | GGNCC | 1 cut(s) | 154 |
| CviAII | CATG | 2 cut(s) | 61, 110 |
| CviJI | RGCY | 2 cut(s) | 58, 146 |
| CviKI_1 | RGCY | 2 cut(s) | 58, 146 |
| DdeI | CTNAG | 1 cut(s) | 129 |
| DpnI | GATC | 1 cut(s) | 114 |
| DpnII | GATC | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 1 cut(s) | 95 |
| EarI | CTCTTC | 1 cut(s) | 95 |
| Eco130I | CCWWGG | 1 cut(s) | 150 |
| Eco47I | GGWCC | 1 cut(s) | 154 |
| EcoO109I | RGGNCCY | 1 cut(s) | 154 |
| EcoT14I | CCWWGG | 1 cut(s) | 150 |
| ErhI | CCWWGG | 1 cut(s) | 150 |
| FaeI | CATG | 2 cut(s) | 64, 113 |
| FaiI | YATR | 2 cut(s) | 62, 111 |
| FatI | CATG | 2 cut(s) | 60, 109 |
| Fnu4HI | GCNGC | 2 cut(s) | 19, 56 |
| Fsp4HI | GCNGC | 2 cut(s) | 19, 56 |
| GluI | GCNGC | 2 cut(s) | 19, 56 |
| Hin1II | CATG | 2 cut(s) | 64, 113 |
| HinfI | GANTC | 1 cut(s) | 46 |
| Hpy188I | TCNGA | 1 cut(s) | 51 |
| Hpy188III | TCNNGA | 3 cut(s) | 61, 110, 116 |
| HpyCH4V | TGCA | 1 cut(s) | 82 |
| HpyF3I | CTNAG | 1 cut(s) | 129 |
| Hsp92II | CATG | 2 cut(s) | 64, 113 |
| Kzo9I | GATC | 1 cut(s) | 112 |
| LmnI | GCTCC | 2 cut(s) | 26, 90 |
| LpnPI | CCDG | 3 cut(s) | 68, 73, 82 |
| Lsp1109I | GCAGC | 1 cut(s) | 5 |
| LweI | GCATC | 1 cut(s) | 5 |
| MaeIII | GTNAC | 1 cut(s) | 124 |
| MalI | GATC | 1 cut(s) | 114 |
| MboI | GATC | 1 cut(s) | 112 |
| MboII | GAAGA | 2 cut(s) | 112, 151 |
| MnlI | CCTC | 4 cut(s) | 3, 34, 96, 157 |
| NdeII | GATC | 1 cut(s) | 112 |
| NlaIII | CATG | 2 cut(s) | 64, 113 |
| NmuCI | GTSAC | 1 cut(s) | 124 |
| PagI | TCATGA | 2 cut(s) | 60, 109 |
| PfeI | GAWTC | 1 cut(s) | 46 |
| PkrI | GCNGC | 2 cut(s) | 20, 57 |
| PpuMI | RGGWCCY | 1 cut(s) | 154 |
| Psp5II | RGGWCCY | 1 cut(s) | 154 |
| PspPI | GGNCC | 1 cut(s) | 154 |
| PspPPI | RGGWCCY | 1 cut(s) | 154 |
| SatI | GCNGC | 2 cut(s) | 19, 56 |
| Sau3AI | GATC | 1 cut(s) | 112 |
| Sau96I | GGNCC | 1 cut(s) | 154 |
| SetI | ASST | 1 cut(s) | 156 |
| SfaNI | GCATC | 1 cut(s) | 5 |
| SgeI | CNNG | 9 cut(s) | 21, 73, 81, 89, 95, 100, 106, 122, 128 |
| SinI | GGWCC | 1 cut(s) | 154 |
| SmlI | CTYRAG | 1 cut(s) | 116 |
| SmoI | CTYRAG | 1 cut(s) | 116 |
| SsiI | CCGC | 1 cut(s) | 55 |
| StyI | CCWWGG | 1 cut(s) | 150 |
| TauI | GCSGC | 1 cut(s) | 58 |
| TfiI | GAWTC | 1 cut(s) | 46 |
| TscAI | CASTG | 1 cut(s) | 133 |
| TseFI | GTSAC | 1 cut(s) | 124 |
| TseI | GCWGC | 1 cut(s) | 18 |
| Tsp45I | GTSAC | 1 cut(s) | 124 |
| TspDTI | ATGAA | 1 cut(s) | 98 |
| TspGWI | ACGGA | 1 cut(s) | 16 |
| TspRI | CASTG | 1 cut(s) | 133 |
| VpaK11BI | GGWCC | 1 cut(s) | 154 |