RchiOBHm_Chr3g0476651

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0009141
Physical Location & Seq
Forward (+)
22651710 .. 22654255
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44204

Sequence Viewer

Length: 1089 bp
ATGATAATTCCGGTGAGGTCATTGGACAAGTTCCGGGCGCAGATTAGTCTTCCTAAGCCCCATAGGATGTCTGATTTCATTAGGAAATCGCCGAAACTGTTTGAATTGTATAGGGATCGTAGGGGGGTTTTATGGTGTGGGATGACTGAGCAAGCTGAGGAGTTGGTAGAGGAGGAGGATAGGTTACTTGAGCAGCATCAAGATAAGGCTGCTGAGTATGTTACTCGTTTTCTTATGATGTCTCTTGATAAGCGGCTTCGAGTTGACAAGATTGCTCATTATAGGAGAGACTTTGCTCTCCCAAATGATTTTAGGACTACCTGGGTGCACAAGTATCCCCAACACTTTAGGCTGGTACGGGATAATGAGGATATCGAGTACTTGGAACTTGTTACTTGGAATCCTGCTTGGGCTATAACGGAGTTGGAGAAGAAGAAGATGGGGGTTACTGATGCCAGTGCTCATACCCCTGGCTTGCTTTCGCTCTCGTTTCCTTTGAAGTTCCCTCCCAATTACAAGAAGAGAGTGTACAAATATCGGGGAGCGCTTGATCATTTTCAGAAGAGGTCTTATTTGTCACCCTATGCAGATGCCAGGGGACTTAAAGCTGGGTCGAAAGAATTTGACAAGAGGGCAGTGGCTATTATGCATGAGCTTCTCAGCTTTACTGTTGAGAAGAGATTGGTGACTGATCACCTCACTCACTTCAGACAGGAACTTGTGATGCCCCAAAAGCTTATGAGACTATTTCTGAAGCATTTTGGCATCTTCTATGTCTCGGAGAGAGGGAAGAGATTTAGTGTCTTCTTGACAGAAGCTTATGAAGGTTCAGAGCTCATTGAGAAGTGCCCTTTGGTTATTTGGAAGGAAAAAGTTCAGAGCCTTATTGGTTACAGAGGAAAGAAGAAGATTGAGACTTTTACTGACATGTCAGACATGGAAGACAGTGGTTTATATAGGAGCAATTCTGAAAGTGAAAATGATTCTGAAGAAGAGAGCATTCACTTGGAGGATAACTCACATACAGATAATTCTGAAATGGAGATTGACGAGGTTTTCAGTGCTTACGAGGACTCTAAAACATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

362

Amino Acids

42.8

Weight (kDa)

6.69

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 2 - 298 4.7e-101 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 253
AclWI GGATC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 3 cut(s) 691, 773, 1008
AfaI GTAC 3 cut(s) 357, 380, 530
AfeI AGCGCT 1 cut(s) 546
AflIII ACRYGT 1 cut(s) 927
AgsI TTSAA 2 cut(s) 104, 499
AjnI CCWGG 3 cut(s) 320, 469, 593
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AluBI AGCT 7 cut(s) 155, 608, 655, 663, 736, 818, 835
AluI AGCT 7 cut(s) 155, 608, 655, 663, 736, 818, 835
Alw21I GWGCWC 3 cut(s) 330, 463, 837
Alw26I GTCTC 5 cut(s) 246, 282, 736, 781, 908
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 1 cut(s) 123
Aor51HI AGCGCT 1 cut(s) 546
ApaLI GTGCAC 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 193, 209
ApoI RAATTY 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 873
AspLEI GCGC 2 cut(s) 40, 547
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 4 cut(s) 25, 570, 686, 697
BaeGI GKGCMC 2 cut(s) 330, 851
BanII GRGCYC 1 cut(s) 837
BarI GAAGNNNNNNTAC 2 cut(s) 512, 544
BbsI GAAGAC 3 cut(s) 41, 796, 948
Bbv12I GWGCWC 3 cut(s) 330, 463, 837
BbvCI CCTCAGC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 196, 205
BccI CCATC 1 cut(s) 433
BciT130I CCWGG 3 cut(s) 322, 471, 595
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 2 cut(s) 550, 691
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 5 cut(s) 246, 282, 736, 781, 908
BfoI RGCGCY 1 cut(s) 548
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 3 cut(s) 194, 210, 254
BlsI GCNGC 3 cut(s) 195, 211, 255
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 4 cut(s) 35, 322, 471, 595
BmrFI CCNGG 4 cut(s) 35, 322, 471, 595
BmsI GCATC 5 cut(s) 205, 442, 580, 714, 774
BpiI GAAGAC 3 cut(s) 41, 796, 948
BplI GAGNNNNNCTC 2 cut(s) 1001, 1033
Bpu10I CCTNAGC 2 cut(s) 54, 156
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 35
BsaJI CCNNGG 3 cut(s) 321, 469, 594
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse1I ACTGG 1 cut(s) 456
BseBI CCWGG 3 cut(s) 322, 471, 595
BseDI CCNNGG 3 cut(s) 321, 469, 594
BseGI GGATG 2 cut(s) 72, 147
BseMII CTCAG 4 cut(s) 138, 147, 204, 673
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 3 cut(s) 173, 185, 188
BseSI GKGCMC 2 cut(s) 330, 851
BseXI GCAGC 2 cut(s) 196, 205
BseYI CCCAGC 1 cut(s) 608
BsiHKAI GWGCWC 3 cut(s) 330, 463, 837
BsiSI CCGG 2 cut(s) 11, 34
BslFI GGGAC 1 cut(s) 612
BsmAI GTCTC 5 cut(s) 246, 282, 736, 781, 908
BsmFI GGGAC 1 cut(s) 612
BsmI GAATGC 1 cut(s) 999
Bsp1286I GDGCHC 4 cut(s) 330, 463, 837, 851
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 3 cut(s) 115, 550, 691
BspACI CCGC 1 cut(s) 253
BspCNI CTCAG 4 cut(s) 139, 148, 205, 672
BspPI GGATC 1 cut(s) 123
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 3 cut(s) 321, 469, 594
BssMI GATC 3 cut(s) 115, 550, 691
Bst2UI CCWGG 3 cut(s) 322, 471, 595
Bst4CI ACNGT 3 cut(s) 99, 670, 947
Bst6I CTCTTC 5 cut(s) 515, 557, 671, 785, 987
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 153, 476
BstDEI CTNAG 5 cut(s) 54, 147, 156, 213, 659
BstF5I GGATG 2 cut(s) 72, 147
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 2 cut(s) 40, 547
BstKTI GATC 3 cut(s) 118, 553, 694
BstMAI GTCTC 5 cut(s) 246, 282, 736, 781, 908
BstMBI GATC 3 cut(s) 115, 550, 691
BstMWI GCNNNNNNNGC 1 cut(s) 733
BstNI CCWGG 3 cut(s) 322, 471, 595
BstNSI RCATGY 1 cut(s) 931
BstSCI CCNGG 4 cut(s) 33, 320, 469, 593
BstSLI GKGCMC 2 cut(s) 330, 851
BstV1I GCAGC 2 cut(s) 196, 205
BstV2I GAAGAC 3 cut(s) 41, 796, 948
BsuI GTATCC 1 cut(s) 345
BtsCI GGATG 2 cut(s) 72, 147
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 4 cut(s) 463, 642, 952, 1066
Cac8I GCNNGC 2 cut(s) 153, 476
CfoI GCGC 2 cut(s) 40, 547
Csp6I GTAC 3 cut(s) 356, 379, 529
CviAII CATG 3 cut(s) 650, 928, 937
CviQI GTAC 3 cut(s) 356, 379, 529
DdeI CTNAG 5 cut(s) 54, 147, 156, 213, 659
DpnI GATC 3 cut(s) 117, 552, 693
DpnII GATC 3 cut(s) 115, 550, 691
Eam1104I CTCTTC 5 cut(s) 515, 557, 671, 785, 987
EarI CTCTTC 5 cut(s) 515, 557, 671, 785, 987
Ecl136II GAGCTC 1 cut(s) 835
Eco24I GRGCYC 1 cut(s) 837
Eco32I GATATC 1 cut(s) 373
Eco47III AGCGCT 1 cut(s) 546
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 3 cut(s) 691, 773, 1008
EcoICRI GAGCTC 1 cut(s) 835
EcoRII CCWGG 3 cut(s) 320, 469, 593
EcoRV GATATC 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 837
FaeI CATG 3 cut(s) 653, 931, 940
FaqI GGGAC 1 cut(s) 612
FatI CATG 3 cut(s) 649, 927, 936
FbaI TGATCA 2 cut(s) 550, 691
Fnu4HI GCNGC 3 cut(s) 194, 210, 254
FokI GGATG 2 cut(s) 79, 154
FriOI GRGCYC 1 cut(s) 837
Fsp4HI GCNGC 3 cut(s) 194, 210, 254
GlaI GCGC 2 cut(s) 39, 546
GluI GCNGC 3 cut(s) 194, 210, 254
GsaI CCCAGC 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 548
HapII CCGG 2 cut(s) 11, 34
HhaI GCGC 2 cut(s) 40, 547
Hin1II CATG 3 cut(s) 653, 931, 940
Hin6I GCGC 2 cut(s) 38, 545
HinP1I GCGC 2 cut(s) 38, 545
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 2 cut(s) 734, 816
HinfI GANTC 3 cut(s) 400, 983, 1073
HpaII CCGG 2 cut(s) 11, 34
HphI GGTGA 4 cut(s) 25, 570, 686, 697
Hpy166II GTNNAC 3 cut(s) 265, 328, 529
Hpy188III TCNNGA 3 cut(s) 200, 245, 808
Hpy8I GTNNAC 3 cut(s) 265, 328, 529
HpyAV CCTTC 2 cut(s) 818, 859
HpyCH4III ACNGT 3 cut(s) 99, 670, 947
HpyCH4V TGCA 3 cut(s) 328, 587, 649
HpyF10VI GCNNNNNNNGC 1 cut(s) 733
HpyF3I CTNAG 5 cut(s) 54, 147, 156, 213, 659
Hsp92II CATG 3 cut(s) 653, 931, 940
HspAI GCGC 2 cut(s) 38, 545
Ksp22I TGATCA 2 cut(s) 550, 691
Kzo9I GATC 3 cut(s) 115, 550, 691
LmnI GCTCC 2 cut(s) 542, 960
Lsp1109I GCAGC 2 cut(s) 196, 205
LweI GCATC 5 cut(s) 205, 442, 580, 714, 774
MaeIII GTNAC 7 cut(s) 183, 220, 391, 445, 576, 685, 890
MalI GATC 3 cut(s) 117, 552, 693
MboI GATC 3 cut(s) 115, 550, 691
MhlI GDGCHC 4 cut(s) 330, 463, 837, 851
MluCI AATT 6 cut(s) 6, 104, 511, 620, 964, 1030
MlyI GAGTC 1 cut(s) 1067
MmeI TCCRAC 1 cut(s) 405
Mph1103I ATGCAT 1 cut(s) 651
MroXI GAANNNNTTC 1 cut(s) 873
MseI TTAA 1 cut(s) 603
MspI CCGG 2 cut(s) 11, 34
MspR9I CCNGG 4 cut(s) 35, 322, 471, 595
Mva1269I GAATGC 1 cut(s) 999
MvaI CCWGG 3 cut(s) 322, 471, 595
MwoI GCNNNNNNNGC 1 cut(s) 733
NciI CCSGG 1 cut(s) 35
NdeII GATC 3 cut(s) 115, 550, 691
NlaIII CATG 3 cut(s) 653, 931, 940
NmuCI GTSAC 2 cut(s) 576, 685
NsiI ATGCAT 1 cut(s) 651
NspI RCATGY 1 cut(s) 931
PciI ACATGT 1 cut(s) 927
PctI GAATGC 1 cut(s) 999
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 2 cut(s) 400, 983
PkrI GCNGC 3 cut(s) 195, 211, 255
PleI GAGTC 1 cut(s) 1067
PpsI GAGTC 1 cut(s) 1067
PscI ACATGT 1 cut(s) 927
Psp124BI GAGCTC 1 cut(s) 837
Psp6I CCWGG 3 cut(s) 320, 469, 593
PspFI CCCAGC 1 cut(s) 608
PspGI CCWGG 3 cut(s) 320, 469, 593
RsaI GTAC 3 cut(s) 357, 380, 530
RsaNI GTAC 3 cut(s) 356, 379, 529
SacI GAGCTC 1 cut(s) 837
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 3 cut(s) 194, 210, 254
Sau3AI GATC 3 cut(s) 115, 550, 691
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 1 cut(s) 1067
ScrFI CCNGG 4 cut(s) 35, 322, 471, 595
SduI GDGCHC 4 cut(s) 330, 463, 837, 851
SfaNI GCATC 5 cut(s) 205, 442, 580, 714, 774
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 6 cut(s) 6, 104, 511, 620, 964, 1030
SsiI CCGC 1 cut(s) 253
SstI GAGCTC 1 cut(s) 837
StyD4I CCNGG 4 cut(s) 33, 320, 469, 593
TaaI ACNGT 3 cut(s) 99, 670, 947
TaqI TCGA 3 cut(s) 259, 375, 614
TasI AATT 6 cut(s) 6, 104, 511, 620, 964, 1030
TatI WGTACW 2 cut(s) 378, 528
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 2 cut(s) 400, 983
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 4 cut(s) 463, 642, 952, 1066
TseFI GTSAC 2 cut(s) 576, 685
TseI GCWGC 2 cut(s) 193, 209
Tsp45I GTSAC 2 cut(s) 576, 685
TspDTI ATGAA 2 cut(s) 67, 837
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 4 cut(s) 463, 642, 952, 1066
VneI GTGCAC 1 cut(s) 326
XapI RAATTY 1 cut(s) 620
XceI RCATGY 1 cut(s) 931
XmnI GAANNNNTTC 1 cut(s) 873
ZrmI AGTACT 1 cut(s) 380
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.